Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005269

Physical Location & Seq

Genomic Coordinates Reverse (-)

30093553 .. 30093864

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1172200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGACTTCAAAAGAATTGAACGAGAAGTCATATAAGGTGAAAATCTCATGTACGGTTTCTATAGAGTGGCATTATGGCAGTAAGGGTGACTTATCTGTCGACTTTTTTCACTATCACCCTCAAAAAACAAACTTTACCTTATATAAAGTAGTTAGAATACGTTTAACCTCTAGATCTAAAATCAATACTTATATACCTGAAATTAGCCATAATTTTCAAGAACATCGTCTAATCTTAGTAAGAGGGGAAGGATTAAAAATAATTATTATATTAAATATATTTTGTAGCCAATCCCGCAAGTCAATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

104

Amino Acids

12.12

Weight (kDa)

9.74

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosom_S12_S23	PF00164	38 - 84	7e-07	Ribosomal protein S12/S23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00905 ATCG01230
fragaria_vesca	FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_7g21740 FvH4_7g21740 FvH4_c3g00110
malus_domestica	MD05G1172200.v1.1 MD16G1012400.v1.1
prunus_persica	Prupe.6G146800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0201871
rosa_laevigata	RLG00000003645
rosa_multiflora	Rmu_sc0001030.1_g000026
rosa_roxburghii	Rroxscaffold_2G00118950 Rroxscaffold_2G00119170 Rroxscaffold_3G00255040
rosa_rugosa	Rorug07G0066100 Rorug07G0066200 Rorug07G0066300
rosa_samantha	Rh1CG031900 Rh5BG347800 Rh7AG193700 Rh7BG195300 Rh7CG204700 Rh7DG199800
rosa_wichuraiana	Rw7G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	1 cut(s)	295
AfaI	GTAC	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	9, 19, 218
AseI	ATTAAT	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	49, 98, 107
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	60
BglII	AGATCT	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	1 cut(s)	295
BssMI	GATC	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	235
BstKTI	GATC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	2 cut(s)	207, 288
CviKI_1	RGCY	2 cut(s)	207, 288
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	51
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	1 cut(s)	47
FauI	CCCGC	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	171
Hin1II	CATG	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HphI	GGTGA	3 cut(s)	49, 98, 107
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188III	TCNNGA	2 cut(s)	171, 218
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	1 cut(s)	235
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	173
LpnPI	CCDG	1 cut(s)	210
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MflI	RGATCY	1 cut(s)	173
MluCI	AATT	6 cut(s)	14, 201, 211, 261, 303, 307
MnlI	CCTC	3 cut(s)	129, 178, 236
MseI	TTAA	4 cut(s)	164, 254, 272, 306
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	86
PshBI	ATTAAT	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	173
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	4 cut(s)	164, 254, 272, 306
Sau3AI	GATC	1 cut(s)	173
SetI	ASST	5 cut(s)	39, 140, 163, 170, 199
SfcI	CTRYAG	1 cut(s)	60
SgeI	CNNG	6 cut(s)	34, 60, 183, 209, 230, 306
Sse9I	AATT	6 cut(s)	14, 201, 211, 261, 303, 307
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	99
TasI	AATT	6 cut(s)	14, 201, 211, 261, 303, 307
Tru1I	TTAA	4 cut(s)	164, 254, 272, 306
Tru9I	TTAA	4 cut(s)	164, 254, 272, 306
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
VspI	ATTAAT	1 cut(s)	306
XbaI	TCTAGA	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.