Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005269

Physical Location & Seq

Genomic Coordinates Forward (+)

53241058 .. 53241489

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG347800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAATGAAAACGTGACTGAATTGGTCCTGGTTACTCTTCGGAAGGGAGTGGAAGAAGGGAAGAGATTCTCGAACAAGGAAAAGGATCCAATGACTTCAAAAGAATTGAACGAGGAGCCGTATGAGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAAGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCATTCTAGTGCGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

134

Amino Acids

14.77

Weight (kDa)

9.6

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosom_S12_S23	PF00164	49 - 131	1.2e-29	Ribosomal protein S12/S23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00905 ATCG01230
fragaria_vesca	FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_7g21740 FvH4_7g21740 FvH4_c3g00110
malus_domestica	MD05G1172200.v1.1 MD16G1012400.v1.1
prunus_persica	Prupe.6G146800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0201871
rosa_laevigata	RLG00000003645
rosa_multiflora	Rmu_sc0001030.1_g000026
rosa_roxburghii	Rroxscaffold_2G00118950 Rroxscaffold_2G00119170 Rroxscaffold_3G00255040
rosa_rugosa	Rorug07G0066100 Rorug07G0066200 Rorug07G0066300
rosa_samantha	Rh1CG031900 Rh5BG347800 Rh7AG193700 Rh7BG195300 Rh7CG204700 Rh7DG199800
rosa_wichuraiana	Rw7G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AclWI	GGATC	3 cut(s)	80, 93, 381
AcoI	YGGCCR	1 cut(s)	259
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	3 cut(s)	99, 109, 233
AjnI	CCWGG	2 cut(s)	27, 250
AlwI	GGATC	3 cut(s)	80, 93, 381
AoxI	GGCC	1 cut(s)	259
Asp700I	GAANNNNTTC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	152, 160
AvaII	GGWCC	1 cut(s)	25
BalI	TGGCCA	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	29, 252
BcnI	CCSGG	1 cut(s)	321
BfaI	CTAG	2 cut(s)	353, 393
BfmI	CTRYAG	1 cut(s)	282
Bme1390I	CCNGG	3 cut(s)	29, 252, 321
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	3 cut(s)	87, 117, 349
BmrFI	CCNGG	3 cut(s)	29, 252, 321
BmsI	GCATC	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	29, 252
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	85, 373
BspANI	GGCC	1 cut(s)	261
BspLI	GGNNCC	3 cut(s)	87, 117, 349
BspPI	GGATC	3 cut(s)	80, 93, 381
BssMI	GATC	2 cut(s)	85, 373
Bst2UI	CCWGG	2 cut(s)	29, 252
Bst6I	CTCTTC	2 cut(s)	42, 56
BstBAI	YACGTR	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	289
BstKTI	GATC	2 cut(s)	88, 376
BstMBI	GATC	2 cut(s)	85, 373
BstNI	CCWGG	2 cut(s)	29, 252
BstSCI	CCNGG	3 cut(s)	27, 250, 319
BstSFI	CTRYAG	1 cut(s)	282
BstSNI	TACGTA	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	261
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	25
CsiI	ACCWGGT	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	212
CviJI	RGCY	2 cut(s)	118, 261
CviKI_1	RGCY	2 cut(s)	118, 261
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	289
DpnI	GATC	2 cut(s)	87, 375
DpnII	GATC	2 cut(s)	85, 373
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	42, 56
EarI	CTCTTC	2 cut(s)	42, 56
Eco105I	TACGTA	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	27, 250
EcoRV	GATATC	1 cut(s)	332
FaiI	YATR	4 cut(s)	123, 246, 248, 264
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FspBI	CTAG	2 cut(s)	353, 393
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	321
HincII	GTYRAC	2 cut(s)	154, 380
HindII	GTYRAC	2 cut(s)	154, 380
HinfI	GANTC	1 cut(s)	66
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	2 cut(s)	152, 160
Hpy166II	GTNNAC	2 cut(s)	154, 380
Hpy188I	TCNGA	2 cut(s)	42, 365
Hpy188III	TCNNGA	2 cut(s)	70, 225
Hpy8I	GTNNAC	2 cut(s)	154, 380
HpyAV	CCTTC	3 cut(s)	37, 50, 297
HpyCH4IV	ACGT	2 cut(s)	12, 196
HpyF3I	CTNAG	1 cut(s)	289
HpySE526I	ACGT	2 cut(s)	12, 196
Kzo9I	GATC	2 cut(s)	85, 373
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	14, 41, 210, 220, 237, 264, 334
LweI	GCATC	1 cut(s)	346
MabI	ACCWGGT	1 cut(s)	250
MaeI	CTAG	2 cut(s)	353, 393
MaeII	ACGT	2 cut(s)	12, 196
MaeIII	GTNAC	3 cut(s)	13, 31, 140
MalI	GATC	2 cut(s)	87, 375
MboI	GATC	2 cut(s)	85, 373
MboII	GAAGA	3 cut(s)	29, 65, 73
MflI	RGATCY	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	3 cut(s)	20, 104, 265
MluNI	TGGCCA	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	4 cut(s)	106, 232, 290, 338
Mox20I	TGGCCA	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	2 cut(s)	218, 309
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	261
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	3 cut(s)	29, 252, 321
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	2 cut(s)	29, 252
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	85, 373
NlaIV	GGNNCC	3 cut(s)	87, 117, 349
NmuCI	GTSAC	2 cut(s)	13, 140
PctI	GAATGC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	27, 250
PspGI	CCWGG	2 cut(s)	27, 250
PspN4I	GGNNCC	3 cut(s)	87, 117, 349
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	218, 309
Sau3AI	GATC	2 cut(s)	85, 373
Sau96I	GGNCC	1 cut(s)	25
ScrFI	CCNGG	3 cut(s)	29, 252, 321
SetI	ASST	4 cut(s)	15, 199, 224, 253
SexAI	ACCWGGT	1 cut(s)	250
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	393
SnaBI	TACGTA	1 cut(s)	197
Sse9I	AATT	3 cut(s)	20, 104, 265
SspMI	CTAG	2 cut(s)	353, 393
StyD4I	CCNGG	3 cut(s)	27, 250, 319
TaiI	ACGT	2 cut(s)	15, 199
TaqI	TCGA	2 cut(s)	71, 343
TasI	AATT	3 cut(s)	20, 104, 265
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	2 cut(s)	218, 309
Tru9I	TTAA	2 cut(s)	218, 309
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	2 cut(s)	13, 140
Tsp45I	GTSAC	2 cut(s)	13, 140
TspDTI	ATGAA	2 cut(s)	17, 21
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	2 cut(s)	353, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.