Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005269

Physical Location & Seq

Genomic Coordinates Forward (+)

15948650 .. 15951297

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG195300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTATCGCATAGCTTCATCCTTCGCCTCTTCAACTCCTAAGAAGCTGGTCCATGCTAGGGTTTTATGCAACAGGAGCTATGTGGCGCAAGATCTCACCTTCCAGATTGGGCCTCGCGCCGCCTTGTTTGAGGTTGCCAAGTTTACCATGGCCGCTCTGCTGCAACGTGTCTCTCAGCTCGGGGAGGCCTTCAGAGTTACCATGGGATCAAAGGTTCCCTCTATTTTTGCAAATGGTCAACGAGAGATTGGAGAGTGCTTAGCAAGGGCATTGGAGAACGTTGAAAAGAAAGGGCATGTTTCTTCCCTCAAAGATTCTGGTATTGGGGAAAATAGGAGAGGCATTTTAGATTATCTAGCCACCCTCAGGGGGCGAGAGGTAATTCAGTTTTATAAACCTTGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

135

Amino Acids

14.97

Weight (kDa)

9.89

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00905 ATCG01230
fragaria_vesca	FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_7g21740 FvH4_7g21740 FvH4_c3g00110
malus_domestica	MD05G1172200.v1.1 MD16G1012400.v1.1
prunus_persica	Prupe.6G146800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0201871
rosa_laevigata	RLG00000003645
rosa_multiflora	Rmu_sc0001030.1_g000026
rosa_roxburghii	Rroxscaffold_2G00118950 Rroxscaffold_2G00119170 Rroxscaffold_3G00255040
rosa_rugosa	Rorug07G0066100 Rorug07G0066200 Rorug07G0066300
rosa_samantha	Rh1CG031900 Rh5BG347800 Rh7AG193700 Rh7BG195300 Rh7CG204700 Rh7DG199800
rosa_wichuraiana	Rw7G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AccBSI	CCGCTC	1 cut(s)	155
AccII	CGCG	1 cut(s)	117
AciI	CCGC	2 cut(s)	120, 153
AclI	AACGTT	1 cut(s)	279
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	175
AfiI	CCNNNNNNNGG	3 cut(s)	58, 366, 369
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	33, 284
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
AluBI	AGCT	4 cut(s)	14, 46, 78, 178
AluI	AGCT	4 cut(s)	14, 46, 78, 178
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	3 cut(s)	110, 150, 186
ApeKI	GCWGC	1 cut(s)	160
AspLEI	GCGC	2 cut(s)	88, 119
AspS9I	GGNCC	2 cut(s)	49, 110
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	57, 356
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	3 cut(s)	120, 153, 161
BlpI	GCTNAGC	1 cut(s)	259
BlsI	GCNGC	3 cut(s)	121, 154, 162
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	49, 110
BmiI	GGNNCC	1 cut(s)	216
Bpu1102I	GCTNAGC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	147, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 366, 369
Bse21I	CCTNAGG	1 cut(s)	365
BseDI	CCNNGG	2 cut(s)	147, 201
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	3 cut(s)	58, 366, 369
BseMII	CTCAG	2 cut(s)	188, 379
BseXI	GCAGC	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	112, 152, 188
BsiHKCI	CYCGRG	1 cut(s)	179
BslI	CCNNNNNNNGG	3 cut(s)	58, 366, 369
BsmAI	GTCTC	1 cut(s)	175
BsnI	GGCC	3 cut(s)	112, 152, 188
BsoBI	CYCGRG	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	91, 206
Bsp1720I	GCTNAGC	1 cut(s)	259
Bsp19I	CCATGG	2 cut(s)	147, 201
BspACI	CCGC	2 cut(s)	120, 153
BspANI	GGCC	3 cut(s)	112, 152, 188
BspCNI	CTCAG	2 cut(s)	187, 378
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	214
BsrBI	CCGCTC	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	147, 201
BssMI	GATC	2 cut(s)	91, 206
BssT1I	CCWWGG	2 cut(s)	147, 201
Bst6I	CTCTTC	1 cut(s)	34
BstDEI	CTNAG	4 cut(s)	39, 174, 259, 365
BstDSI	CCRYGG	2 cut(s)	147, 201
BstF5I	GGATG	1 cut(s)	17
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	88, 119
BstKTI	GATC	2 cut(s)	94, 209
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	91, 206
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	299
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	112, 152, 188
BtgI	CCRYGG	2 cut(s)	147, 201
BtsCI	GGATG	1 cut(s)	17
CfoI	GCGC	2 cut(s)	88, 119
Cfr13I	GGNCC	2 cut(s)	49, 110
CviAII	CATG	4 cut(s)	53, 148, 202, 296
CviJI	RGCY	8 cut(s)	14, 46, 78, 112, 152, 178, 188, 359
CviKI_1	RGCY	8 cut(s)	14, 46, 78, 112, 152, 178, 188, 359
DdeI	CTNAG	4 cut(s)	39, 174, 259, 365
DpnI	GATC	2 cut(s)	93, 208
DpnII	GATC	2 cut(s)	91, 206
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	147, 201
Eco147I	AGGCCT	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	175
Eco81I	CCTNAGG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	179
EcoT14I	CCWWGG	2 cut(s)	147, 201
ErhI	CCWWGG	2 cut(s)	147, 201
FaeI	CATG	4 cut(s)	56, 151, 205, 299
FaiI	YATR	8 cut(s)	11, 54, 67, 81, 149, 203, 297, 393
FatI	CATG	4 cut(s)	52, 147, 201, 295
Fnu4HI	GCNGC	3 cut(s)	120, 153, 161
FokI	GGATG	1 cut(s)	4
Fsp4HI	GCNGC	3 cut(s)	120, 153, 161
FspBI	CTAG	2 cut(s)	57, 356
GlaI	GCGC	2 cut(s)	87, 118
GluI	GCNGC	3 cut(s)	120, 153, 161
HaeIII	GGCC	3 cut(s)	112, 152, 188
HhaI	GCGC	2 cut(s)	88, 119
Hin1II	CATG	4 cut(s)	56, 151, 205, 299
Hin6I	GCGC	2 cut(s)	86, 117
HinP1I	GCGC	2 cut(s)	86, 117
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HinfI	GANTC	1 cut(s)	314
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	144, 239
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	2 cut(s)	144, 239
HpyAV	CCTTC	3 cut(s)	31, 109, 199
HpyCH4IV	ACGT	2 cut(s)	166, 279
HpyCH4V	TGCA	3 cut(s)	69, 163, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	4 cut(s)	39, 174, 259, 365
HpySE526I	ACGT	2 cut(s)	166, 279
Hsp92II	CATG	4 cut(s)	56, 151, 205, 299
HspAI	GCGC	2 cut(s)	86, 117
Kzo9I	GATC	2 cut(s)	91, 206
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	5 cut(s)	32, 58, 116, 303, 352
Lsp1109I	GCAGC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	57, 356
MaeII	ACGT	2 cut(s)	166, 279
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	93, 208
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	2 cut(s)	91, 206
MboII	GAAGA	2 cut(s)	21, 294
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	1 cut(s)	381
MnlI	CCTC	9 cut(s)	37, 123, 124, 178, 229, 317, 332, 370, 374
MseI	TTAA	1 cut(s)	406
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	75
NcoI	CCATGG	2 cut(s)	147, 201
NdeII	GATC	2 cut(s)	91, 206
NlaIII	CATG	4 cut(s)	56, 151, 205, 299
NlaIV	GGNNCC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	121, 154, 162
PsiI	TTATAA	1 cut(s)	393
Psp1406I	AACGTT	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	2 cut(s)	49, 110
PsuI	RGATCY	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	406
SatI	GCNGC	3 cut(s)	120, 153, 161
Sau3AI	GATC	2 cut(s)	91, 206
Sau96I	GGNCC	2 cut(s)	49, 110
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	1 cut(s)	381
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	2 cut(s)	120, 153
SspMI	CTAG	2 cut(s)	57, 356
StuI	AGGCCT	1 cut(s)	188
StyI	CCWWGG	2 cut(s)	147, 201
TaiI	ACGT	2 cut(s)	169, 282
TasI	AATT	1 cut(s)	381
TauI	GCSGC	2 cut(s)	122, 155
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	406
Tru9I	TTAA	1 cut(s)	406
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	6
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	2 cut(s)	57, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.