Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005269

Physical Location & Seq

Genomic Coordinates Reverse (-)

334997 .. 337887

Gene Structure 2891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00530.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTATCGAATCGCTTCAAACTTAGCTTCCTCCTTGGCCTCCTCTACTTCCAAGAAGCTGGTCTGCGGTAGGGTTGTATGCAATAGGAGCTATGCGGCCCAAGATCTCACCTTGGAGATTGGGCCACGCGCCGCCTTGTTTGAGGCTGCCAGGTTCACCGTGGCCGCTCTGGTGCAACGCGTCTCTGAGCTCGGGGAGGCCTTCAGAGTTACGACGGGGTCAAAGAATGTGAGCGAAAGACTTGCGGAACAGGTCGTCACAGCTGATGGTACAACTTCTGCAGCTGTCTTGACCCAGGCAACACTCACAGAAGGTTGCCACTCCGTAGGTGCTCAGATTGAAGAGATCTTAGCAAGGCCATCGGAGAACTTTGAAAAGAAAGGACATGTTTCTTCCCTCAAAGATACCGGTATTGGGGAAAATAGGAGAGCCAGTTTAGATGATCTAGCCACCCTCACTGGGCGAGAGGTTATAAGTGCAGATAACAGTTTCATTATCGACAGACTGCTCATGTCACCCACATTAAATCAATTGATTCGTCATAATAGAACTGAGAAAAGTCGCACGAACCGTAATCGAGCTTTGGATAAATGCCCCCAAAAGCAAGGAGTATGCCTGCGAGTTTTTACAAGAACACCCAAGAAGCCAAATTCAGCTCTCCGTAAGGTGGCCAAAGTAAGGCTGAGCAATCGAAATGATGTATTTTCTTACATTCCAGGTGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGGGGCAGAGTGAAAGATTTGCCTGGTGTGAAATTCCACTGTATCAGAGGAGTTAAGGATTTGCTTGGACTTCCAAACCGAAGAAGAGGCCGATCAAAATATGGTGCAGAAAAGCCAAAGAGCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

297

Amino Acids

32.44

Weight (kDa)

10.19

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosom_S12_S23	PF00164	202 - 306	8.4e-37	Ribosomal protein S12/S23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00905 ATCG01230
fragaria_vesca	FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_7g21740 FvH4_7g21740 FvH4_c3g00110
malus_domestica	MD05G1172200.v1.1 MD16G1012400.v1.1
prunus_persica	Prupe.6G146800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0201871
rosa_laevigata	RLG00000003645
rosa_multiflora	Rmu_sc0001030.1_g000026
rosa_roxburghii	Rroxscaffold_2G00118950 Rroxscaffold_2G00119170 Rroxscaffold_3G00255040
rosa_rugosa	Rorug07G0066100 Rorug07G0066200 Rorug07G0066300
rosa_samantha	Rh1CG031900 Rh5BG347800 Rh7AG193700 Rh7BG195300 Rh7CG204700 Rh7DG199800
rosa_wichuraiana	Rw7G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	473
AccBSI	CCGCTC	1 cut(s)	167
AccII	CGCG	2 cut(s)	129, 180
AciI	CCGC	5 cut(s)	66, 95, 132, 165, 245
AcoI	YGGCCR	2 cut(s)	162, 669
AcsI	RAATTY	2 cut(s)	649, 794
AcuI	CTGAAG	1 cut(s)	187
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	5 cut(s)	414, 459, 667, 678, 722
AflIII	ACRYGT	2 cut(s)	178, 385
AgeI	ACCGGT	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	18, 341, 374
AjnI	CCWGG	4 cut(s)	149, 294, 715, 784
AluBI	AGCT	8 cut(s)	26, 58, 90, 190, 263, 284, 581, 656
AluI	AGCT	8 cut(s)	26, 58, 90, 190, 263, 284, 581, 656
Alw21I	GWGCWC	2 cut(s)	192, 334
Alw26I	GTCTC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	8 cut(s)	36, 96, 122, 162, 198, 356, 669, 850
ApeKI	GCWGC	2 cut(s)	146, 281
ApoI	RAATTY	2 cut(s)	649, 794
AsiGI	ACCGGT	1 cut(s)	407
Asp700I	GAANNNNTTC	1 cut(s)	13
AspLEI	GCGC	2 cut(s)	131, 887
AspS9I	GGNCC	2 cut(s)	97, 122
AsuHPI	GGTGA	4 cut(s)	100, 148, 507, 731
AvaI	CYCGRG	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	671
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	192, 334
BbvI	GCAGC	2 cut(s)	133, 293
BccI	CCATC	2 cut(s)	260, 367
BcgI	CGANNNNNNTGC	4 cut(s)	224, 258, 342, 376
BciT130I	CCWGG	4 cut(s)	151, 296, 717, 786
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	888
BglII	AGATCT	2 cut(s)	103, 345
BisI	GCNGC	5 cut(s)	96, 132, 147, 165, 282
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	5 cut(s)	97, 133, 148, 166, 283
Bme1390I	CCNGG	4 cut(s)	151, 296, 717, 786
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	97, 122
BmrFI	CCNGG	4 cut(s)	151, 296, 717, 786
BmrI	ACTGGG	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	683
BsaJI	CCNNGG	4 cut(s)	33, 111, 159, 294
BsaWI	WCCGGW	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	5 cut(s)	414, 459, 667, 678, 722
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	2 cut(s)	432, 463
BseBI	CCWGG	4 cut(s)	151, 296, 717, 786
BseDI	CCNNGG	4 cut(s)	33, 111, 159, 294
BseLI	CCNNNNNNNGG	5 cut(s)	414, 459, 667, 678, 722
BseMII	CTCAG	4 cut(s)	177, 347, 543, 674
BseNI	ACTGG	2 cut(s)	432, 463
BseRI	GAGGAG	2 cut(s)	31, 825
BseXI	GCAGC	2 cut(s)	133, 293
BsgI	GTGCAG	2 cut(s)	498, 888
Bsh1236I	CGCG	2 cut(s)	129, 180
BshFI	GGCC	8 cut(s)	38, 98, 124, 164, 200, 358, 671, 852
BshTI	ACCGGT	1 cut(s)	407
BsiHKAI	GWGCWC	2 cut(s)	192, 334
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	408
BslI	CCNNNNNNNGG	5 cut(s)	414, 459, 667, 678, 722
BsmAI	GTCTC	1 cut(s)	187
BsmBI	CGTCTC	1 cut(s)	187
BsnI	GGCC	8 cut(s)	38, 98, 124, 164, 200, 358, 671, 852
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	192, 334
Bsp143I	GATC	4 cut(s)	103, 345, 442, 854
Bsp1720I	GCTNAGC	1 cut(s)	683
BspACI	CCGC	5 cut(s)	66, 95, 132, 165, 245
BspANI	GGCC	8 cut(s)	38, 98, 124, 164, 200, 358, 671, 852
BspCNI	CTCAG	4 cut(s)	178, 346, 544, 675
BspFNI	CGCG	2 cut(s)	129, 180
BspMAI	CTGCAG	1 cut(s)	283
BsrBI	CCGCTC	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	2 cut(s)	432, 463
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	4 cut(s)	33, 111, 159, 294
BssMI	GATC	4 cut(s)	103, 345, 442, 854
BssT1I	CCWWGG	2 cut(s)	33, 111
Bst2UI	CCWGG	4 cut(s)	151, 296, 717, 786
Bst4CI	ACNGT	4 cut(s)	160, 488, 572, 803
Bst6I	CTCTTC	2 cut(s)	336, 841
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	6 cut(s)	22, 186, 333, 349, 552, 683
BstDSI	CCRYGG	1 cut(s)	159
BstFNI	CGCG	2 cut(s)	129, 180
BstH2I	RGCGCY	1 cut(s)	888
BstHHI	GCGC	2 cut(s)	131, 887
BstKTI	GATC	4 cut(s)	106, 348, 445, 857
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	4 cut(s)	103, 345, 442, 854
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNI	CCWGG	4 cut(s)	151, 296, 717, 786
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	4 cut(s)	149, 294, 715, 784
BstSFI	CTRYAG	1 cut(s)	279
BstUI	CGCG	2 cut(s)	129, 180
BstV1I	GCAGC	2 cut(s)	133, 293
BstX2I	RGATCY	2 cut(s)	103, 345
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstYI	RGATCY	2 cut(s)	103, 345
BsuRI	GGCC	8 cut(s)	38, 98, 124, 164, 200, 358, 671, 852
BtgI	CCRYGG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	456, 799
Cac8I	GCNNGC	1 cut(s)	617
CfoI	GCGC	2 cut(s)	131, 887
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	2 cut(s)	97, 122
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	270
CspAI	ACCGGT	1 cut(s)	407
CviAII	CATG	2 cut(s)	386, 511
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	6 cut(s)	22, 186, 333, 349, 552, 683
DpnI	GATC	4 cut(s)	105, 347, 444, 856
DpnII	GATC	4 cut(s)	103, 345, 442, 854
EaeI	YGGCCR	2 cut(s)	162, 669
Eam1104I	CTCTTC	2 cut(s)	336, 841
EarI	CTCTTC	2 cut(s)	336, 841
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	33, 111
Eco147I	AGGCCT	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	4 cut(s)	149, 294, 715, 784
EcoT14I	CCWWGG	2 cut(s)	33, 111
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	2 cut(s)	33, 111
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	2 cut(s)	389, 514
FatI	CATG	2 cut(s)	385, 510
Fnu4HI	GCNGC	5 cut(s)	96, 132, 147, 165, 282
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	5 cut(s)	96, 132, 147, 165, 282
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	2 cut(s)	130, 886
GluI	GCNGC	5 cut(s)	96, 132, 147, 165, 282
HaeII	RGCGCY	1 cut(s)	888
HaeIII	GGCC	8 cut(s)	38, 98, 124, 164, 200, 358, 671, 852
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	131, 887
Hin1II	CATG	2 cut(s)	389, 514
Hin6I	GCGC	2 cut(s)	129, 885
HinP1I	GCGC	2 cut(s)	129, 885
HinfI	GANTC	2 cut(s)	9, 535
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	4 cut(s)	100, 148, 507, 731
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	5 cut(s)	187, 206, 336, 364, 809
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	156
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	3 cut(s)	211, 305, 716
HpyCH4III	ACNGT	4 cut(s)	160, 488, 572, 803
HpyCH4V	TGCA	6 cut(s)	81, 175, 281, 479, 736, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	6 cut(s)	22, 186, 333, 349, 552, 683
Hsp92II	CATG	2 cut(s)	389, 514
HspAI	GCGC	2 cut(s)	129, 885
Kzo9I	GATC	4 cut(s)	103, 345, 442, 854
LmnI	GCTCC	1 cut(s)	87
Lsp1109I	GCAGC	2 cut(s)	133, 293
MaeI	CTAG	1 cut(s)	446
MaeIII	GTNAC	3 cut(s)	208, 256, 513
MalI	GATC	4 cut(s)	105, 347, 444, 856
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	4 cut(s)	103, 345, 442, 854
MboII	GAAGA	4 cut(s)	353, 384, 855, 858
MfeI	CAATTG	1 cut(s)	530
MflI	RGATCY	2 cut(s)	103, 345
MhlI	GDGCHC	2 cut(s)	192, 334
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	4 cut(s)	530, 649, 730, 794
MluI	ACGCGT	1 cut(s)	178
MluNI	TGGCCA	1 cut(s)	671
Mox20I	TGGCCA	1 cut(s)	671
MroXI	GAANNNNTTC	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	3 cut(s)	524, 755, 816
Msp20I	TGGCCA	1 cut(s)	671
MspA1I	CMGCKG	2 cut(s)	263, 284
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	4 cut(s)	151, 296, 717, 786
MunI	CAATTG	1 cut(s)	530
MvaI	CCWGG	4 cut(s)	151, 296, 717, 786
MvnI	CGCG	2 cut(s)	129, 180
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeII	GATC	4 cut(s)	103, 345, 442, 854
NlaIII	CATG	2 cut(s)	389, 514
NmuCI	GTSAC	2 cut(s)	256, 513
NspI	RCATGY	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	200
PciI	ACATGT	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	9, 535
PflFI	GACNNNGTC	1 cut(s)	217
PinAI	ACCGGT	1 cut(s)	407
PkrI	GCNGC	5 cut(s)	97, 133, 148, 166, 283
PscI	ACATGT	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	4 cut(s)	149, 294, 715, 784
PspGI	CCWGG	4 cut(s)	149, 294, 715, 784
PspPI	GGNCC	2 cut(s)	97, 122
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	103, 345
PsyI	GACNNNGTC	1 cut(s)	217
PvuII	CAGCTG	2 cut(s)	263, 284
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	524, 755, 816
SatI	GCNGC	5 cut(s)	96, 132, 147, 165, 282
Sau3AI	GATC	4 cut(s)	103, 345, 442, 854
Sau96I	GGNCC	2 cut(s)	97, 122
ScrFI	CCNGG	4 cut(s)	151, 296, 717, 786
SduI	GDGCHC	2 cut(s)	192, 334
SfcI	CTRYAG	1 cut(s)	279
Sse9I	AATT	4 cut(s)	530, 649, 730, 794
SseBI	AGGCCT	1 cut(s)	200
SsiI	CCGC	5 cut(s)	66, 95, 132, 165, 245
SspMI	CTAG	1 cut(s)	446
SstI	GAGCTC	1 cut(s)	192
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	4 cut(s)	149, 294, 715, 784
StyI	CCWWGG	2 cut(s)	33, 111
TaaI	ACNGT	4 cut(s)	160, 488, 572, 803
TaqI	TCGA	4 cut(s)	7, 498, 577, 691
TasI	AATT	4 cut(s)	530, 649, 730, 794
TauI	GCSGC	3 cut(s)	98, 134, 167
TfiI	GAWTC	2 cut(s)	9, 535
Tru1I	TTAA	3 cut(s)	524, 755, 816
Tru9I	TTAA	3 cut(s)	524, 755, 816
TscAI	CASTG	2 cut(s)	463, 806
TseFI	GTSAC	2 cut(s)	256, 513
TseI	GCWGC	2 cut(s)	146, 281
Tsp45I	GTSAC	2 cut(s)	256, 513
TspDTI	ATGAA	1 cut(s)	481
TspGWI	ACGGA	2 cut(s)	313, 650
TspRI	CASTG	2 cut(s)	463, 806
Tth111I	GACNNNGTC	1 cut(s)	217
XapI	RAATTY	2 cut(s)	649, 794
XceI	RCATGY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	13
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.