Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001030.1

Orthogroup ID

OG0005269

Physical Location & Seq

Genomic Coordinates Forward (+)

103326 .. 106519

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001030.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgtatcgcatagcttcatccttcgcctcttcaactcctaagaagctggtccacagtagggttttatgcaataggagctatgtggcgcaagatctcgccttcccgattgggcctcgcgccgccttgtttgaggttgcggaggctgccaagtttaccatggccgctctgctgcaacgtgtctctcagctcggggacgccttcagagctacgatgggatcaaaggatggtgttactgttgccaagggcattagttatgaggacaagtacaagaatgtgagcgagacgcttactgctggtggagatggtacaacttttgcagctgtcttgaccctggcaacactcacagaaggttgccagtccataggtgttggggttccctctatttttgcaaatggtcaacgagagattggagagtgcttagcaagggcattggagaacgttgaaaagaaagggcatgtttcttccctcaaagattctggtattggggaaaataggagtggcattttagattatctagccatcctcagggggcgagaggttataagtgaagataacagtttcattatcgacagactgctcatgtcacccacattaaatcaattgattcgtcataatagaactgagaaaagtcgcacaaaccgtaatcgagctttggataaatgcccccaaaagcaaggagtatgcctacgggtttttacgagaacaccaaagaagccaaattcagctctgcgtaaggtagccaaagtaaggctaagcaatcgaaatgatgtattttcttacattcccggtgaaggtcataatttgcaggaacattctatggtcttaataagagggggcagagtgaaagatttgccaggtgtgaaattccactgtatcagaggagttaaggatttgctgggacttccaaatcgaagaagaggccgatcaaaatatggtgcagagaagcccaagagcgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

319

Amino Acids

34.94

Weight (kDa)

10.07

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00905 ATCG01230
fragaria_vesca	FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_7g21740 FvH4_7g21740 FvH4_c3g00110
malus_domestica	MD05G1172200.v1.1 MD16G1012400.v1.1
prunus_persica	Prupe.6G146800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0201871
rosa_laevigata	RLG00000003645
rosa_multiflora	Rmu_sc0001030.1_g000026
rosa_roxburghii	Rroxscaffold_2G00118950 Rroxscaffold_2G00119170 Rroxscaffold_3G00255040
rosa_rugosa	Rorug07G0066100 Rorug07G0066200 Rorug07G0066300
rosa_samantha	Rh1CG031900 Rh5BG347800 Rh7AG193700 Rh7BG195300 Rh7CG204700 Rh7DG199800
rosa_wichuraiana	Rw7G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	542
AccBSI	CCGCTC	1 cut(s)	164
AccII	CGCG	1 cut(s)	117
AciI	CCGC	3 cut(s)	120, 137, 162
AclI	AACGTT	1 cut(s)	438
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	718, 863
AcuI	CTGAAG	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	2 cut(s)	266, 307
AfiI	CCNNNNNNNGG	4 cut(s)	58, 525, 747, 791
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	33, 443
AjnI	CCWGG	2 cut(s)	330, 853
AluBI	AGCT	8 cut(s)	14, 46, 78, 187, 206, 320, 650, 725
AluI	AGCT	8 cut(s)	14, 46, 78, 187, 206, 320, 650, 725
Alw26I	GTCTC	2 cut(s)	184, 275
AlwI	GGATC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	3 cut(s)	110, 159, 919
ApeKI	GCWGC	3 cut(s)	143, 169, 317
ApoI	RAATTY	2 cut(s)	718, 863
AspLEI	GCGC	3 cut(s)	88, 119, 956
AspS9I	GGNCC	2 cut(s)	49, 110
AsuC2I	CCSGG	1 cut(s)	786
AsuHPI	GGTGA	2 cut(s)	576, 800
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	524
BbvI	GCAGC	3 cut(s)	130, 156, 329
BccI	CCATC	4 cut(s)	205, 218, 296, 527
BciT130I	CCWGG	2 cut(s)	332, 855
BcnI	CCSGG	1 cut(s)	786
BcoDI	GTCTC	2 cut(s)	184, 275
BfaI	CTAG	1 cut(s)	515
BfoI	RGCGCY	1 cut(s)	957
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	5 cut(s)	120, 144, 162, 170, 318
BlpI	GCTNAGC	2 cut(s)	418, 752
BlsI	GCNGC	5 cut(s)	121, 145, 163, 171, 319
Bme1390I	CCNGG	3 cut(s)	332, 786, 855
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	49, 110
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	3 cut(s)	332, 786, 855
Bpu1102I	GCTNAGC	2 cut(s)	418, 752
BpuMI	CCSGG	1 cut(s)	786
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	156, 240, 330
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 525, 747, 791
Bse1I	ACTGG	1 cut(s)	355
Bse21I	CCTNAGG	1 cut(s)	524
BseBI	CCWGG	2 cut(s)	332, 855
BseDI	CCNNGG	3 cut(s)	156, 240, 330
BseGI	GGATG	3 cut(s)	17, 229, 519
BseLI	CCNNNNNNNGG	4 cut(s)	58, 525, 747, 791
BseMII	CTCAG	3 cut(s)	197, 538, 612
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	894
BseXI	GCAGC	3 cut(s)	130, 156, 329
BseYI	CCCAGC	1 cut(s)	895
BsgI	GTGCAG	1 cut(s)	957
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	112, 161, 921
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	786
BslFI	GGGAC	2 cut(s)	206, 912
BslI	CCNNNNNNNGG	4 cut(s)	58, 525, 747, 791
BsmAI	GTCTC	2 cut(s)	184, 275
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	2 cut(s)	206, 912
BsnI	GGCC	3 cut(s)	112, 161, 921
BsoBI	CYCGRG	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	91, 215, 923
Bsp1720I	GCTNAGC	2 cut(s)	418, 752
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	3 cut(s)	120, 137, 162
BspANI	GGCC	3 cut(s)	112, 161, 921
BspCNI	CTCAG	3 cut(s)	196, 537, 613
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	3 cut(s)	156, 240, 330
BssMI	GATC	3 cut(s)	91, 215, 923
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	156, 240
Bst2UI	CCWGG	2 cut(s)	332, 855
Bst4CI	ACNGT	5 cut(s)	56, 235, 557, 641, 872
Bst6I	CTCTTC	2 cut(s)	34, 910
BstACI	GRCGYC	1 cut(s)	195
BstDEI	CTNAG	6 cut(s)	39, 183, 418, 524, 621, 752
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	3 cut(s)	17, 229, 519
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	957
BstHHI	GCGC	3 cut(s)	88, 119, 956
BstKTI	GATC	3 cut(s)	94, 218, 926
BstMAI	GTCTC	2 cut(s)	184, 275
BstMBI	GATC	3 cut(s)	91, 215, 923
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 143, 203
BstNI	CCWGG	2 cut(s)	332, 855
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	3 cut(s)	330, 784, 853
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	3 cut(s)	130, 156, 329
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	524
BsuRI	GGCC	3 cut(s)	112, 161, 921
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	3 cut(s)	17, 229, 519
BtsIMutI	CAGTG	1 cut(s)	868
CfoI	GCGC	3 cut(s)	88, 119, 956
Cfr13I	GGNCC	2 cut(s)	49, 110
CseI	GACGC	2 cut(s)	203, 292
Csp6I	GTAC	2 cut(s)	265, 306
CviAII	CATG	3 cut(s)	157, 455, 580
CviQI	GTAC	2 cut(s)	265, 306
DdeI	CTNAG	6 cut(s)	39, 183, 418, 524, 621, 752
DpnI	GATC	3 cut(s)	93, 217, 925
DpnII	GATC	3 cut(s)	91, 215, 923
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	2 cut(s)	34, 910
EarI	CTCTTC	2 cut(s)	34, 910
Eco130I	CCWWGG	2 cut(s)	156, 240
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	184
Eco81I	CCTNAGG	1 cut(s)	524
Eco88I	CYCGRG	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	330, 853
EcoT14I	CCWWGG	2 cut(s)	156, 240
ErhI	CCWWGG	2 cut(s)	156, 240
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	3 cut(s)	160, 458, 583
FaqI	GGGAC	2 cut(s)	206, 912
FatI	CATG	3 cut(s)	156, 454, 579
Fnu4HI	GCNGC	5 cut(s)	120, 144, 162, 170, 318
FokI	GGATG	3 cut(s)	4, 236, 506
Fsp4HI	GCNGC	5 cut(s)	120, 144, 162, 170, 318
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	3 cut(s)	87, 118, 955
GluI	GCNGC	5 cut(s)	120, 144, 162, 170, 318
GsaI	CCCAGC	1 cut(s)	899
HaeII	RGCGCY	1 cut(s)	957
HaeIII	GGCC	3 cut(s)	112, 161, 921
HapII	CCGG	1 cut(s)	786
HgaI	GACGC	2 cut(s)	203, 292
HhaI	GCGC	3 cut(s)	88, 119, 956
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	160, 458, 583
Hin6I	GCGC	3 cut(s)	86, 117, 954
HinP1I	GCGC	3 cut(s)	86, 117, 954
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HinfI	GANTC	2 cut(s)	473, 604
HpaII	CCGG	1 cut(s)	786
HphI	GGTGA	2 cut(s)	576, 800
Hpy166II	GTNNAC	3 cut(s)	52, 153, 398
Hpy188I	TCNGA	2 cut(s)	203, 878
Hpy188III	TCNNGA	2 cut(s)	103, 325
Hpy8I	GTNNAC	3 cut(s)	52, 153, 398
HpyAV	CCTTC	5 cut(s)	31, 109, 208, 341, 785
HpyCH4III	ACNGT	5 cut(s)	56, 235, 557, 641, 872
HpyCH4IV	ACGT	2 cut(s)	175, 438
HpyCH4V	TGCA	6 cut(s)	69, 172, 317, 389, 805, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 143, 203
HpyF3I	CTNAG	6 cut(s)	39, 183, 418, 524, 621, 752
HpySE526I	ACGT	2 cut(s)	175, 438
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	160, 458, 583
HspAI	GCGC	3 cut(s)	86, 117, 954
Kzo9I	GATC	3 cut(s)	91, 215, 923
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	3 cut(s)	130, 156, 329
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	2 cut(s)	175, 438
MaeIII	GTNAC	2 cut(s)	229, 582
MalI	GATC	3 cut(s)	93, 217, 925
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	3 cut(s)	91, 215, 923
MboII	GAAGA	5 cut(s)	21, 453, 560, 924, 927
MfeI	CAATTG	1 cut(s)	599
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	4 cut(s)	599, 718, 799, 863
MseI	TTAA	3 cut(s)	593, 824, 885
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	786
MspR9I	CCNGG	3 cut(s)	332, 786, 855
MunI	CAATTG	1 cut(s)	599
MvaI	CCWGG	2 cut(s)	332, 855
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	75, 143, 203
NciI	CCSGG	1 cut(s)	786
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	91, 215, 923
NlaIII	CATG	3 cut(s)	160, 458, 583
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	582
NspI	RCATGY	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	637
PfeI	GAWTC	2 cut(s)	473, 604
PkrI	GCNGC	5 cut(s)	121, 145, 163, 171, 319
PsiI	TTATAA	1 cut(s)	542
Psp1406I	AACGTT	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	330, 853
PspFI	CCCAGC	1 cut(s)	895
PspGI	CCWGG	2 cut(s)	330, 853
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	2 cut(s)	49, 110
PsuI	RGATCY	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	266, 307
RsaNI	GTAC	2 cut(s)	265, 306
SaqAI	TTAA	3 cut(s)	593, 824, 885
SatI	GCNGC	5 cut(s)	120, 144, 162, 170, 318
Sau3AI	GATC	3 cut(s)	91, 215, 923
Sau96I	GGNCC	2 cut(s)	49, 110
ScrFI	CCNGG	3 cut(s)	332, 786, 855
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	4 cut(s)	599, 718, 799, 863
SsiI	CCGC	3 cut(s)	120, 137, 162
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	3 cut(s)	330, 784, 853
StyI	CCWWGG	2 cut(s)	156, 240
TaaI	ACNGT	5 cut(s)	56, 235, 557, 641, 872
TaiI	ACGT	2 cut(s)	178, 441
TaqI	TCGA	4 cut(s)	567, 646, 760, 910
TasI	AATT	4 cut(s)	599, 718, 799, 863
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	2 cut(s)	122, 164
TfiI	GAWTC	2 cut(s)	473, 604
Tru1I	TTAA	3 cut(s)	593, 824, 885
Tru9I	TTAA	3 cut(s)	593, 824, 885
TscAI	CASTG	1 cut(s)	875
TseFI	GTSAC	1 cut(s)	582
TseI	GCWGC	3 cut(s)	143, 169, 317
Tsp45I	GTSAC	1 cut(s)	582
TspDTI	ATGAA	2 cut(s)	6, 550
TspRI	CASTG	1 cut(s)	875
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	2 cut(s)	718, 863
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.