Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005269

Physical Location & Seq

Genomic Coordinates Forward (+)

5036536 .. 5037738

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0066300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCCGGGGATTAGAACCCAAGTCTTGAATCAAGATATGTGTTGTAAGAAACTGATGGCAAAGCAACCAAGAAAAGAAGAGGATACAAGTTTCAAGAAGAAAGTTCGAATTATGTACACTGATCCCTATGCTACTGATTCTTCGAGTGAAGATGATGAGCAATGTAATGCTAATGAGTATCAATCTGTGCCCAGAAAGAAGGTATTTGTTTCGGAGATTGTGGTTGGTGGCATGCAAGATGAATCATGTGTGTCTGGAGGTAGAATTGGTAATACCAATAAATCTGATGGCAGTAAGAAAAATCATAGATCCTATTCTATATATAAGGGAGTTCGGCGTAGAAAATGGGGTAAATATGCTGCAGAGATTCGTGATCCGTTTCGAGGGGTACGGGAGTGGATTGGCACTTTTGATACTGCAGAGGAGGCTTCTGTTGCTTATCAAAATAGGAGGCTTCTGTTTGATAACATGAAGTTAGAGTTAAAGAGAAAGACTGAATATAAGGACTTGCAATTATCAAATGAGGCGTTTAAGAGTTCTCATTTAACAGTTGAGAGCAATCATCAGTTTGAGTGTCAAAGCTTTCATTTATTGAGGGAGAGTCAGGATTCATCAGTAGCTGCTGCTGCTAATGAAACCTTTTCATATGAAGAGACCGCAAGTTTGTTTTGTCATCCATCACCATCATCTGTGCTTGATATACCTCCTAGTAAAGCTGCACTTGGTATTCGAGTCTCCAATGGGGAGGTTTTTCAGCCAGAAGGCTCTGTGCAACCGCTTTCCGAAGAAGAGCTATCCAATTTGAAATTTTCTGAAGTGCCAATATCATCAGCAATAAGTGCTGAAGAAGGCTACATGCAACCACTTTCCGAAGAAAAGCTATCTGTTTTGAAATTTCCTGAAGTGCCAATATTTTCAGCAATAATTGCTGAAGAAGGCTCTGTTCAACCGCTTTCTGAAGAAGAGCATTTCAATTTGAAATTTACTGAAGTGTCAATATTGTCACCAATAAGAACCGAAGTTTGGGGATTTATGAATTTGGGATTTGTGGACAATGACATATTTGATGGTTTGGATCAGTTGTTTGTTGGTAGGAGTGACATAGTTGATCCTCCTGTGCATTGTCCTGGAAATGGTGAGAATATCAGTCTTCCTCCTAGTAAGTTTCTTATGAGTGACTTGGCAGGGTTTTGCTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

400

Amino Acids

44.94

Weight (kDa)

5.07

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	108 - 148	2.2e-07	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00905 ATCG01230
fragaria_vesca	FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_7g21740 FvH4_7g21740 FvH4_c3g00110
malus_domestica	MD05G1172200.v1.1 MD16G1012400.v1.1
prunus_persica	Prupe.6G146800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0201871
rosa_laevigata	RLG00000003645
rosa_multiflora	Rmu_sc0001030.1_g000026
rosa_roxburghii	Rroxscaffold_2G00118950 Rroxscaffold_2G00119170 Rroxscaffold_3G00255040
rosa_rugosa	Rorug07G0066100 Rorug07G0066200 Rorug07G0066300
rosa_samantha	Rh1CG031900 Rh5BG347800 Rh7AG193700 Rh7BG195300 Rh7CG204700 Rh7DG199800
rosa_wichuraiana	Rw7G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	657, 776, 950
AclWI	GGATC	5 cut(s)	116, 303, 368, 1083, 1103
AcsI	RAATTY	4 cut(s)	806, 893, 980, 1036
AcuI	CTGAAG	6 cut(s)	834, 864, 921, 951, 978, 1008
AfaI	GTAC	2 cut(s)	116, 390
AfiI	CCNNNNNNNGG	3 cut(s)	383, 1023, 1133
AgsI	TTSAA	7 cut(s)	28, 94, 805, 892, 947, 973, 979
AjnI	CCWGG	1 cut(s)	1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	1006, 1038
AluBI	AGCT	5 cut(s)	582, 620, 716, 793, 880
AluI	AGCT	5 cut(s)	582, 620, 716, 793, 880
Alw26I	GTCTC	2 cut(s)	647, 739
AlwI	GGATC	5 cut(s)	116, 303, 368, 1083, 1103
AlwNI	CAGNNNCTG	1 cut(s)	620
ApeKI	GCWGC	5 cut(s)	359, 620, 623, 626, 716
ApoI	RAATTY	4 cut(s)	806, 893, 980, 1036
ArsI	GACNNNNNNTTYG	2 cut(s)	646, 678
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	3 cut(s)	672, 996, 1148
AsuII	TTCGAA	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	192
BaeI	ACNNNNGTAYC	2 cut(s)	380, 413
BbsI	GAAGAC	1 cut(s)	1142
BbvI	GCAGC	5 cut(s)	346, 607, 610, 613, 703
BccI	CCATC	5 cut(s)	49, 281, 685, 691, 1061
BciT130I	CCWGG	1 cut(s)	1128
BciVI	GTATCC	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	647, 739
BfaI	CTAG	2 cut(s)	708, 1158
BfmI	CTRYAG	2 cut(s)	360, 417
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	5 cut(s)	360, 621, 624, 627, 717
BlsI	GCNGC	5 cut(s)	361, 622, 625, 628, 718
Bme1390I	CCNGG	2 cut(s)	6, 1128
BmrFI	CCNGG	2 cut(s)	6, 1128
BpiI	GAAGAC	1 cut(s)	1142
BpmI	CTGGAG	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	3 cut(s)	383, 1023, 1133
Bse3DI	GCAATG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	1128
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	3 cut(s)	383, 1023, 1133
BseMI	GCAATG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	5 cut(s)	346, 607, 610, 613, 703
BseYI	CCCAGC	1 cut(s)	1194
BsgI	GTGCAG	1 cut(s)	702
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	3 cut(s)	383, 1023, 1133
BsmAI	GTCTC	2 cut(s)	647, 739
Bso31I	GGTCTC	1 cut(s)	647
Bsp119I	TTCGAA	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	5 cut(s)	121, 308, 373, 1075, 1108
BspACI	CCGC	3 cut(s)	657, 776, 950
BspMAI	CTGCAG	2 cut(s)	364, 421
BspPI	GGATC	5 cut(s)	116, 303, 368, 1083, 1103
BspQI	GCTCTTC	2 cut(s)	783, 957
BspT104I	TTCGAA	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	5 cut(s)	121, 308, 373, 1075, 1108
Bst2UI	CCWGG	1 cut(s)	1128
Bst4CI	ACNGT	1 cut(s)	550
Bst6I	CTCTTC	4 cut(s)	72, 645, 783, 957
BstAPI	GCANNNNNTGC	2 cut(s)	839, 926
BstAUI	TGTACA	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	673
BstKTI	GATC	5 cut(s)	124, 311, 376, 1078, 1111
BstMAI	GTCTC	2 cut(s)	647, 739
BstMBI	GATC	5 cut(s)	121, 308, 373, 1075, 1108
BstMWI	GCNNNNNNNGC	5 cut(s)	425, 434, 626, 839, 926
BstNI	CCWGG	1 cut(s)	1128
BstNSI	RCATGY	2 cut(s)	235, 859
BstSCI	CCNGG	2 cut(s)	4, 1126
BstSFI	CTRYAG	2 cut(s)	360, 417
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	5 cut(s)	346, 607, 610, 613, 703
BstV2I	GAAGAC	1 cut(s)	1142
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	620
Csp6I	GTAC	2 cut(s)	115, 389
CviAII	CATG	4 cut(s)	232, 246, 469, 856
CviQI	GTAC	2 cut(s)	115, 389
DpnI	GATC	5 cut(s)	123, 310, 375, 1077, 1110
DpnII	GATC	5 cut(s)	121, 308, 373, 1075, 1108
Eam1104I	CTCTTC	4 cut(s)	72, 645, 783, 957
EarI	CTCTTC	4 cut(s)	72, 645, 783, 957
Eco31I	GGTCTC	1 cut(s)	647
Eco57I	CTGAAG	6 cut(s)	834, 864, 921, 951, 978, 1008
EcoRII	CCWGG	1 cut(s)	1126
FaeI	CATG	4 cut(s)	235, 249, 472, 859
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FatI	CATG	4 cut(s)	231, 245, 468, 855
FauNDI	CATATG	1 cut(s)	646
Fnu4HI	GCNGC	5 cut(s)	360, 621, 624, 627, 717
FokI	GGATG	1 cut(s)	660
Fsp4HI	GCNGC	5 cut(s)	360, 621, 624, 627, 717
FspBI	CTAG	2 cut(s)	708, 1158
GluI	GCNGC	5 cut(s)	360, 621, 624, 627, 717
GsaI	CCCAGC	1 cut(s)	1198
GsuI	CTGGAG	1 cut(s)	276
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	4 cut(s)	235, 249, 472, 859
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	7 cut(s)	28, 137, 242, 367, 601, 608, 732
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	3 cut(s)	672, 996, 1148
Hpy166II	GTNNAC	2 cut(s)	117, 1051
Hpy188I	TCNGA	6 cut(s)	214, 286, 784, 814, 871, 958
Hpy188III	TCNNGA	7 cut(s)	25, 32, 94, 255, 371, 605, 899
Hpy8I	GTNNAC	2 cut(s)	117, 1051
HpyAV	CCTTC	4 cut(s)	193, 755, 842, 929
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4V	TGCA	8 cut(s)	235, 362, 419, 511, 719, 772, 859, 1120
HpyF10VI	GCNNNNNNNGC	5 cut(s)	425, 434, 626, 839, 926
Hsp92II	CATG	4 cut(s)	235, 249, 472, 859
Kzo9I	GATC	5 cut(s)	121, 308, 373, 1075, 1108
LguI	GCTCTTC	2 cut(s)	783, 957
Lsp1109I	GCAGC	5 cut(s)	346, 607, 610, 613, 703
MaeI	CTAG	2 cut(s)	708, 1158
MaeIII	GTNAC	3 cut(s)	1002, 1097, 1175
MalI	GATC	5 cut(s)	123, 310, 375, 1077, 1110
MboI	GATC	5 cut(s)	121, 308, 373, 1075, 1108
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	610, 741
MseI	TTAA	3 cut(s)	482, 531, 545
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	6, 1128
MvaI	CCWGG	1 cut(s)	1128
MwoI	GCNNNNNNNGC	5 cut(s)	425, 434, 626, 839, 926
NciI	CCSGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	5 cut(s)	121, 308, 373, 1075, 1108
NlaIII	CATG	4 cut(s)	235, 249, 472, 859
NmuCI	GTSAC	3 cut(s)	1002, 1097, 1175
NspI	RCATGY	2 cut(s)	235, 859
NspV	TTCGAA	1 cut(s)	106
PaeI	GCATGC	1 cut(s)	235
PciSI	GCTCTTC	2 cut(s)	783, 957
PfeI	GAWTC	5 cut(s)	28, 137, 242, 367, 608
PfoI	TCCNGGA	1 cut(s)	1126
PkrI	GCNGC	5 cut(s)	361, 622, 625, 628, 718
PleI	GAGTC	2 cut(s)	609, 740
PpsI	GAGTC	2 cut(s)	609, 740
Psp6I	CCWGG	1 cut(s)	1126
PspFI	CCCAGC	1 cut(s)	1194
PspGI	CCWGG	1 cut(s)	1126
PstI	CTGCAG	2 cut(s)	364, 421
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	2 cut(s)	116, 390
RsaNI	GTAC	2 cut(s)	115, 389
SapI	GCTCTTC	2 cut(s)	783, 957
SaqAI	TTAA	3 cut(s)	482, 531, 545
SatI	GCNGC	5 cut(s)	360, 621, 624, 627, 717
Sau3AI	GATC	5 cut(s)	121, 308, 373, 1075, 1108
SchI	GAGTC	2 cut(s)	610, 741
ScrFI	CCNGG	2 cut(s)	6, 1128
SduI	GDGCHC	1 cut(s)	192
SfcI	CTRYAG	2 cut(s)	360, 417
SfuI	TTCGAA	1 cut(s)	106
SphI	GCATGC	1 cut(s)	235
SsiI	CCGC	3 cut(s)	657, 776, 950
SspI	AATATT	2 cut(s)	912, 999
SspMI	CTAG	2 cut(s)	708, 1158
StyD4I	CCNGG	2 cut(s)	4, 1126
TaaI	ACNGT	1 cut(s)	550
TaqI	TCGA	4 cut(s)	106, 143, 382, 730
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	5 cut(s)	28, 137, 242, 367, 608
Tru1I	TTAA	3 cut(s)	482, 531, 545
Tru9I	TTAA	3 cut(s)	482, 531, 545
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	3 cut(s)	1002, 1097, 1175
TseI	GCWGC	5 cut(s)	359, 620, 623, 626, 716
Tsp45I	GTSAC	3 cut(s)	1002, 1097, 1175
TspDTI	ATGAA	8 cut(s)	255, 485, 575, 600, 633, 648, 663, 1049
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	4 cut(s)	806, 893, 980, 1036
XceI	RCATGY	2 cut(s)	235, 859
XspI	CTAG	2 cut(s)	708, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.