Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

contig_3

Orthogroup ID

OG0005269

Physical Location & Seq

Genomic Coordinates Forward (+)

29284 .. 29710

Gene Structure 427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_c3g00110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAATGAAAACGTGACTGAATTGGTCCTGTCTTCGGAAGGGAGTGGAAGACGGGAAGAGATTCTCGAACAAGGAAAAGGATCCAATGACTTCAAAAGAATTGAACGAGGAGCCAGTGGCAGTAAGGGTAACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGGAGGGTTAAAGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010467 GO:0019538 GO:0031976 GO:0031984 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosom_S12_S23

Protein Analysis

131

Amino Acids

14.11

Weight (kDa)

10.31

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosom_S12_S23	PF00164	39 - 128	2.7e-30	Ribosomal protein S12/S23

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005269)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00905 ATCG01230
fragaria_vesca	FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_5g00530 FvH4_7g21740 FvH4_7g21740 FvH4_c3g00110
malus_domestica	MD05G1172200.v1.1 MD16G1012400.v1.1
prunus_persica	Prupe.6G146800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0201871
rosa_laevigata	RLG00000003645
rosa_multiflora	Rmu_sc0001030.1_g000026
rosa_roxburghii	Rroxscaffold_2G00118950 Rroxscaffold_2G00119170 Rroxscaffold_3G00255040
rosa_rugosa	Rorug07G0066100 Rorug07G0066200 Rorug07G0066300
rosa_samantha	Rh1CG031900 Rh5BG347800 Rh7AG193700 Rh7BG195300 Rh7CG204700 Rh7DG199800
rosa_wichuraiana	Rw7G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	75, 88, 369
AcoI	YGGCCR	1 cut(s)	247
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	34, 245
AgsI	TTSAA	3 cut(s)	94, 104, 221
AjnI	CCWGG	1 cut(s)	238
AlwI	GGATC	3 cut(s)	75, 88, 369
AoxI	GGCC	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	25
BalI	TGGCCA	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	80
BbsI	GAAGAC	2 cut(s)	24, 55
BciT130I	CCWGG	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	309
BfaI	CTAG	2 cut(s)	341, 381
BfmI	CTRYAG	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	240, 309
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	3 cut(s)	82, 112, 337
BmrFI	CCNGG	2 cut(s)	240, 309
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	2 cut(s)	24, 55
BpuMI	CCSGG	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 245
Bse1I	ACTGG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	34, 245
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	34, 245
BsnI	GGCC	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	80, 361
BspANI	GGCC	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	82, 112, 337
BspPI	GGATC	3 cut(s)	75, 88, 369
BsrI	ACTGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	80, 361
Bst2UI	CCWGG	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	277
BstKTI	GATC	2 cut(s)	83, 364
BstMBI	GATC	2 cut(s)	80, 361
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	238, 307
BstSFI	CTRYAG	1 cut(s)	270
BstSNI	TACGTA	1 cut(s)	185
BstV2I	GAAGAC	2 cut(s)	24, 55
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	249
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	121, 225
Cfr13I	GGNCC	1 cut(s)	25
CsiI	ACCWGGT	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	200
CviJI	RGCY	2 cut(s)	113, 249
CviKI_1	RGCY	2 cut(s)	113, 249
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	2 cut(s)	82, 363
DpnII	GATC	2 cut(s)	80, 361
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco105I	TACGTA	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	320
FaiI	YATR	3 cut(s)	234, 236, 252
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FspBI	CTAG	2 cut(s)	341, 381
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	1 cut(s)	309
HincII	GTYRAC	2 cut(s)	142, 368
HindII	GTYRAC	2 cut(s)	142, 368
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	142, 368
Hpy188I	TCNGA	2 cut(s)	37, 353
Hpy188III	TCNNGA	2 cut(s)	65, 213
Hpy8I	GTNNAC	2 cut(s)	142, 368
HpyAV	CCTTC	1 cut(s)	32
HpyCH4IV	ACGT	2 cut(s)	12, 184
HpyF3I	CTNAG	1 cut(s)	277
HpySE526I	ACGT	2 cut(s)	12, 184
Kzo9I	GATC	2 cut(s)	80, 361
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	7 cut(s)	41, 127, 198, 208, 225, 252, 322
LweI	GCATC	1 cut(s)	334
MabI	ACCWGGT	1 cut(s)	238
MaeI	CTAG	2 cut(s)	341, 381
MaeII	ACGT	2 cut(s)	12, 184
MaeIII	GTNAC	2 cut(s)	13, 128
MalI	GATC	2 cut(s)	82, 363
MboI	GATC	2 cut(s)	80, 361
MboII	GAAGA	3 cut(s)	24, 60, 68
MflI	RGATCY	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	3 cut(s)	20, 99, 253
MluNI	TGGCCA	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	101, 220, 278, 285, 326
Mox20I	TGGCCA	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	2 cut(s)	206, 297
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	2 cut(s)	240, 309
MvaI	CCWGG	1 cut(s)	240
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	80, 361
NlaIV	GGNNCC	3 cut(s)	82, 112, 337
NmuCI	GTSAC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	61
Ppu21I	YACGTR	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	82, 112, 337
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	206, 297
Sau3AI	GATC	2 cut(s)	80, 361
Sau96I	GGNCC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	240, 309
SetI	ASST	4 cut(s)	15, 187, 212, 241
SexAI	ACCWGGT	1 cut(s)	238
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	25
SnaBI	TACGTA	1 cut(s)	185
Sse9I	AATT	3 cut(s)	20, 99, 253
SspMI	CTAG	2 cut(s)	341, 381
StyD4I	CCNGG	2 cut(s)	238, 307
TaiI	ACGT	2 cut(s)	15, 187
TaqI	TCGA	2 cut(s)	66, 331
TasI	AATT	3 cut(s)	20, 99, 253
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	206, 297
Tru9I	TTAA	2 cut(s)	206, 297
TscAI	CASTG	2 cut(s)	121, 232
TseFI	GTSAC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	17, 21
TspRI	CASTG	2 cut(s)	121, 232
VpaK11BI	GGWCC	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	2 cut(s)	341, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.