RAP
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G31890 |
| fragaria_vesca | FvH4_1g00100 |
| malus_domestica | MD11G1156300.v1.1 |
| prunus_persica | Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 |
| pyrus_communis | pycom11g12690 |
| rosa_chinensis | RchiOBHm_Chr2g0084391 |
| rosa_laevigata | RLG00000015613 |
| rosa_multiflora | Rmu_sc0009404.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00156140 |
| rosa_rugosa | Rorug01G0453000 Rorug01G0453100 Rorug01G0453200 Rorug01G0453300 |
| rosa_samantha | Rh2AG001400 Rh2BG001300 Rh2CG001300 Rh2DG001500 |
| rosa_wichuraiana | Rw2G000110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2516 |
| AccB1I | GGYRCC | 1 cut(s) | 1067 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1752 |
| AccBSI | CCGCTC | 1 cut(s) | 2177 |
| AccI | GTMKAC | 1 cut(s) | 1284 |
| AccII | CGCG | 1 cut(s) | 454 |
| AciI | CCGC | 5 cut(s) | 1789, 2175, 2444, 2803, 2987 |
| AclWI | GGATC | 4 cut(s) | 244, 824, 2760, 3083 |
| AcsI | RAATTY | 7 cut(s) | 822, 856, 878, 1446, 1464, 2856, 3309 |
| AcuI | CTGAAG | 2 cut(s) | 1710, 2106 |
| AcvI | CACGTG | 1 cut(s) | 2984 |
| AfaI | GTAC | 5 cut(s) | 1177, 1606, 2933, 3101, 3215 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 839, 1344, 1345, 1752, 1788, 2409, 2823 |
| AflIII | ACRYGT | 1 cut(s) | 2225 |
| AjiI | CACGTC | 1 cut(s) | 1183 |
| AjnI | CCWGG | 5 cut(s) | 560, 724, 753, 1063, 1338 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1074, 1106 |
| Alw21I | GWGCWC | 3 cut(s) | 299, 2739, 3324 |
| Alw26I | GTCTC | 4 cut(s) | 1761, 2105, 2216, 3255 |
| AlwI | GGATC | 4 cut(s) | 244, 824, 2760, 3083 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 760, 3227 |
| Ama87I | CYCGRG | 1 cut(s) | 2489 |
| AoxI | GGCC | 8 cut(s) | 389, 625, 768, 902, 2024, 2394, 3064, 3151 |
| ApoI | RAATTY | 7 cut(s) | 822, 856, 878, 1446, 1464, 2856, 3309 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1026, 1059 |
| AspLEI | GCGC | 1 cut(s) | 454 |
| AspS9I | GGNCC | 8 cut(s) | 389, 626, 718, 769, 902, 2024, 2800, 3152 |
| AsuC2I | CCSGG | 1 cut(s) | 834 |
| AsuHPI | GGTGA | 4 cut(s) | 1265, 1495, 2139, 2363 |
| AsuII | TTCGAA | 1 cut(s) | 1399 |
| AvaI | CYCGRG | 1 cut(s) | 2489 |
| AvaII | GGWCC | 2 cut(s) | 718, 2800 |
| AxyI | CCTNAGG | 1 cut(s) | 1032 |
| BanI | GGYRCC | 1 cut(s) | 1067 |
| BanII | GRGCYC | 2 cut(s) | 299, 1500 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 423, 455, 1380, 1412, 2915, 2947 |
| BauI | CACGAG | 1 cut(s) | 2326 |
| BbrPI | CACGTG | 1 cut(s) | 2984 |
| BbsI | GAAGAC | 4 cut(s) | 176, 1496, 1887, 1988 |
| Bbv12I | GWGCWC | 3 cut(s) | 299, 2739, 3324 |
| BceAI | ACGGC | 1 cut(s) | 1055 |
| BciT130I | CCWGG | 5 cut(s) | 562, 726, 755, 1065, 1340 |
| BciVI | GTATCC | 2 cut(s) | 708, 1106 |
| BclI | TGATCA | 1 cut(s) | 1317 |
| BcnI | CCSGG | 1 cut(s) | 834 |
| BcoDI | GTCTC | 4 cut(s) | 1761, 2105, 2216, 3255 |
| BfaI | CTAG | 8 cut(s) | 21, 282, 816, 1016, 2267, 2789, 2906, 3293 |
| BfmI | CTRYAG | 1 cut(s) | 2106 |
| BfuI | GTATCC | 2 cut(s) | 708, 1106 |
| BglII | AGATCT | 2 cut(s) | 2701, 2962 |
| BlpI | GCTNAGC | 1 cut(s) | 1558 |
| Bme1390I | CCNGG | 6 cut(s) | 562, 726, 755, 834, 1065, 1340 |
| Bme18I | GGWCC | 2 cut(s) | 718, 2800 |
| BmeT110I | CYCGRG | 1 cut(s) | 2489 |
| BmgBI | CACGTC | 1 cut(s) | 1183 |
| BmgT120I | GGNCC | 8 cut(s) | 389, 626, 718, 769, 902, 2024, 2800, 3152 |
| BmiI | GGNNCC | 4 cut(s) | 1013, 1069, 1499, 3183 |
| BmrFI | CCNGG | 6 cut(s) | 562, 726, 755, 834, 1065, 1340 |
| BmrI | ACTGGG | 3 cut(s) | 1126, 1503, 3186 |
| BmsI | GCATC | 9 cut(s) | 460, 652, 665, 815, 972, 1561, 1894, 2516, 2614 |
| BmuI | ACTGGG | 3 cut(s) | 1126, 1503, 3186 |
| BpiI | GAAGAC | 4 cut(s) | 176, 1496, 1887, 1988 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2547 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1558 |
| Bpu14I | TTCGAA | 1 cut(s) | 1399 |
| BpuEI | CTTGAG | 8 cut(s) | 916, 1457, 1535, 2292, 2880, 2948, 2987, 3151 |
| BpuMI | CCSGG | 1 cut(s) | 834 |
| Bsa29I | ATCGAT | 2 cut(s) | 909, 1736 |
| BsaAI | YACGTR | 2 cut(s) | 2228, 2984 |
| BsaI | GGTCTC | 1 cut(s) | 1761 |
| BsaJI | CCNNGG | 6 cut(s) | 561, 1338, 1746, 1986, 2403, 3186 |
| BsaWI | WCCGGW | 1 cut(s) | 349 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 313, 343 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 839, 1344, 1345, 1752, 1788, 2409, 2823 |
| Bse118I | RCCGGY | 1 cut(s) | 3210 |
| Bse1I | ACTGG | 8 cut(s) | 142, 309, 1121, 1498, 1563, 2914, 3067, 3181 |
| Bse21I | CCTNAGG | 1 cut(s) | 1032 |
| Bse3DI | GCAATG | 3 cut(s) | 2166, 2286, 2718 |
| BseBI | CCWGG | 5 cut(s) | 562, 726, 755, 1065, 1340 |
| BseCI | ATCGAT | 2 cut(s) | 909, 1736 |
| BseDI | CCNNGG | 6 cut(s) | 561, 1338, 1746, 1986, 2403, 3186 |
| BseGI | GGATG | 5 cut(s) | 391, 406, 1667, 1965, 3115 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 839, 1344, 1345, 1752, 1788, 2409, 2823 |
| BseMI | GCAATG | 3 cut(s) | 2166, 2286, 2718 |
| BseMII | CTCAG | 7 cut(s) | 699, 852, 1023, 1572, 2034, 2561, 2752 |
| BseNI | ACTGG | 8 cut(s) | 142, 309, 1121, 1498, 1563, 2914, 3067, 3181 |
| BseRI | GAGGAG | 3 cut(s) | 1490, 1596, 2984 |
| BseYI | CCCAGC | 1 cut(s) | 1948 |
| Bsh1236I | CGCG | 1 cut(s) | 454 |
| BshFI | GGCC | 8 cut(s) | 391, 627, 770, 904, 2026, 2396, 3066, 3153 |
| BshNI | GGYRCC | 1 cut(s) | 1067 |
| BshVI | ATCGAT | 2 cut(s) | 909, 1736 |
| BsiHKAI | GWGCWC | 3 cut(s) | 299, 2739, 3324 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2489 |
| BsiSI | CCGG | 3 cut(s) | 350, 834, 3211 |
| BslFI | GGGAC | 3 cut(s) | 1361, 2127, 3204 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 839, 1344, 1345, 1752, 1788, 2409, 2823 |
| BsmAI | GTCTC | 4 cut(s) | 1761, 2105, 2216, 3255 |
| BsmFI | GGGAC | 3 cut(s) | 1361, 2127, 3204 |
| BsmI | GAATGC | 2 cut(s) | 1142, 1297 |
| BsnI | GGCC | 8 cut(s) | 391, 627, 770, 904, 2026, 2396, 3066, 3153 |
| Bso31I | GGTCTC | 1 cut(s) | 1761 |
| BsoBI | CYCGRG | 1 cut(s) | 2489 |
| Bsp119I | TTCGAA | 1 cut(s) | 1399 |
| Bsp1286I | GDGCHC | 4 cut(s) | 299, 1500, 2739, 3324 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1558 |
| Bsp19I | CCATGG | 1 cut(s) | 1986 |
| BspACI | CCGC | 5 cut(s) | 1789, 2175, 2444, 2803, 2987 |
| BspANI | GGCC | 8 cut(s) | 391, 627, 770, 904, 2026, 2396, 3066, 3153 |
| BspCNI | CTCAG | 7 cut(s) | 700, 853, 1024, 1571, 2033, 2560, 2751 |
| BspDI | ATCGAT | 2 cut(s) | 909, 1736 |
| BspFNI | CGCG | 1 cut(s) | 454 |
| BspHI | TCATGA | 2 cut(s) | 25, 826 |
| BspLI | GGNNCC | 4 cut(s) | 1013, 1069, 1499, 3183 |
| BspMAI | CTGCAG | 1 cut(s) | 2110 |
| BspPI | GGATC | 4 cut(s) | 244, 824, 2760, 3083 |
| BspQI | GCTCTTC | 2 cut(s) | 2184, 2841 |
| BspT104I | TTCGAA | 1 cut(s) | 1399 |
| BspT107I | GGYRCC | 1 cut(s) | 1067 |
| BspTNI | GGTCTC | 1 cut(s) | 1761 |
| BsrBI | CCGCTC | 1 cut(s) | 2177 |
| BsrDI | GCAATG | 3 cut(s) | 2166, 2286, 2718 |
| BsrFI | RCCGGY | 1 cut(s) | 3210 |
| BsrI | ACTGG | 8 cut(s) | 142, 309, 1121, 1498, 1563, 2914, 3067, 3181 |
| BssAI | RCCGGY | 1 cut(s) | 3210 |
| BssECI | CCNNGG | 6 cut(s) | 561, 1338, 1746, 1986, 2403, 3186 |
| BssSI | CACGAG | 1 cut(s) | 2326 |
| BssT1I | CCWWGG | 4 cut(s) | 1746, 1986, 2403, 3186 |
| Bst2BI | CACGAG | 1 cut(s) | 2326 |
| Bst2UI | CCWGG | 5 cut(s) | 562, 726, 755, 1065, 1340 |
| Bst4CI | ACNGT | 5 cut(s) | 1223, 1916, 1939, 2661, 2868 |
| Bst6I | CTCTTC | 4 cut(s) | 687, 1962, 2184, 2841 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 107, 812, 2081 |
| BstBAI | YACGTR | 2 cut(s) | 2228, 2984 |
| BstBI | TTCGAA | 1 cut(s) | 1399 |
| BstC8I | GCNNGC | 2 cut(s) | 1850, 1946 |
| BstDSI | CCRYGG | 1 cut(s) | 1986 |
| BstEII | GGTNACC | 1 cut(s) | 728 |
| BstF5I | GGATG | 5 cut(s) | 391, 406, 1667, 1965, 3115 |
| BstFNI | CGCG | 1 cut(s) | 454 |
| BstHHI | GCGC | 1 cut(s) | 454 |
| BstMAI | GTCTC | 4 cut(s) | 1761, 2105, 2216, 3255 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 107, 812, 2081, 2285, 2393, 2441 |
| BstNI | CCWGG | 5 cut(s) | 562, 726, 755, 1065, 1340 |
| BstNSI | RCATGY | 2 cut(s) | 1417, 1948 |
| BstPI | GGTNACC | 1 cut(s) | 728 |
| BstSCI | CCNGG | 6 cut(s) | 560, 724, 753, 832, 1063, 1338 |
| BstSFI | CTRYAG | 1 cut(s) | 2106 |
| BstUI | CGCG | 1 cut(s) | 454 |
| BstV2I | GAAGAC | 4 cut(s) | 176, 1496, 1887, 1988 |
| BstX2I | RGATCY | 2 cut(s) | 2701, 2962 |
| BstYI | RGATCY | 2 cut(s) | 2701, 2962 |
| Bsu15I | ATCGAT | 2 cut(s) | 909, 1736 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1032 |
| BsuI | GTATCC | 2 cut(s) | 708, 1106 |
| BsuRI | GGCC | 8 cut(s) | 391, 627, 770, 904, 2026, 2396, 3066, 3153 |
| BsuTUI | ATCGAT | 2 cut(s) | 909, 1736 |
| BtgI | CCRYGG | 1 cut(s) | 1986 |
| BtrI | CACGTC | 1 cut(s) | 1183 |
| BtsCI | GGATG | 5 cut(s) | 391, 406, 1667, 1965, 3115 |
| BtsIMutI | CAGTG | 5 cut(s) | 135, 266, 1570, 2921, 3060 |
| Cac8I | GCNNGC | 2 cut(s) | 1850, 1946 |
| CaiI | CAGNNNCTG | 2 cut(s) | 760, 3227 |
| CciI | TCATGA | 2 cut(s) | 25, 826 |
| CfoI | GCGC | 1 cut(s) | 454 |
| Cfr10I | RCCGGY | 1 cut(s) | 3210 |
| Cfr13I | GGNCC | 8 cut(s) | 389, 626, 718, 769, 902, 2024, 2800, 3152 |
| ClaI | ATCGAT | 2 cut(s) | 909, 1736 |
| Csp6I | GTAC | 5 cut(s) | 1176, 1605, 2932, 3100, 3214 |
| CviQI | GTAC | 5 cut(s) | 1176, 1605, 2932, 3100, 3214 |
| Eam1104I | CTCTTC | 4 cut(s) | 687, 1962, 2184, 2841 |
| EarI | CTCTTC | 4 cut(s) | 687, 1962, 2184, 2841 |
| Ecl136II | GAGCTC | 1 cut(s) | 297 |
| Eco130I | CCWWGG | 4 cut(s) | 1746, 1986, 2403, 3186 |
| Eco24I | GRGCYC | 2 cut(s) | 299, 1500 |
| Eco31I | GGTCTC | 1 cut(s) | 1761 |
| Eco32I | GATATC | 2 cut(s) | 306, 2881 |
| Eco47I | GGWCC | 2 cut(s) | 718, 2800 |
| Eco53kI | GAGCTC | 1 cut(s) | 297 |
| Eco57I | CTGAAG | 2 cut(s) | 1710, 2106 |
| Eco72I | CACGTG | 1 cut(s) | 2984 |
| Eco81I | CCTNAGG | 1 cut(s) | 1032 |
| Eco88I | CYCGRG | 1 cut(s) | 2489 |
| Eco91I | GGTNACC | 1 cut(s) | 728 |
| EcoICRI | GAGCTC | 1 cut(s) | 297 |
| EcoO109I | RGGNCCY | 1 cut(s) | 626 |
| EcoO65I | GGTNACC | 1 cut(s) | 728 |
| EcoRI | GAATTC | 3 cut(s) | 822, 856, 878 |
| EcoRII | CCWGG | 5 cut(s) | 560, 724, 753, 1063, 1338 |
| EcoRV | GATATC | 2 cut(s) | 306, 2881 |
| EcoT14I | CCWWGG | 4 cut(s) | 1746, 1986, 2403, 3186 |
| EcoT22I | ATGCAT | 2 cut(s) | 1105, 1909 |
| EcoT38I | GRGCYC | 2 cut(s) | 299, 1500 |
| ErhI | CCWWGG | 4 cut(s) | 1746, 1986, 2403, 3186 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1410, 1442 |
| FaqI | GGGAC | 3 cut(s) | 1361, 2127, 3204 |
| FauI | CCCGC | 2 cut(s) | 2437, 2980 |
| FbaI | TGATCA | 1 cut(s) | 1317 |
| FblI | GTMKAC | 1 cut(s) | 1284 |
| FokI | GGATG | 5 cut(s) | 393, 398, 1654, 1972, 3122 |
| FriOI | GRGCYC | 2 cut(s) | 299, 1500 |
| FspBI | CTAG | 8 cut(s) | 21, 282, 816, 1016, 2267, 2789, 2906, 3293 |
| GlaI | GCGC | 1 cut(s) | 453 |
| GsaI | CCCAGC | 1 cut(s) | 1952 |
| HaeIII | GGCC | 8 cut(s) | 391, 627, 770, 904, 2026, 2396, 3066, 3153 |
| HapII | CCGG | 3 cut(s) | 350, 834, 3211 |
| HhaI | GCGC | 1 cut(s) | 454 |
| Hin6I | GCGC | 1 cut(s) | 452 |
| HinP1I | GCGC | 1 cut(s) | 452 |
| HindIII | AAGCTT | 3 cut(s) | 1095, 1475, 2924 |
| HinfI | GANTC | 9 cut(s) | 395, 865, 978, 1060, 1738, 1871, 2140, 2579, 2600 |
| HpaII | CCGG | 3 cut(s) | 350, 834, 3211 |
| HphI | GGTGA | 4 cut(s) | 1265, 1495, 2139, 2363 |
| Hpy166II | GTNNAC | 7 cut(s) | 314, 1285, 1411, 2689, 2911, 3094, 3102 |
| Hpy8I | GTNNAC | 7 cut(s) | 314, 1285, 1411, 2689, 2911, 3094, 3102 |
| HpyAV | CCTTC | 9 cut(s) | 87, 731, 1081, 1267, 1337, 1444, 1685, 3269, 3310 |
| HpyCH4III | ACNGT | 5 cut(s) | 1223, 1916, 1939, 2661, 2868 |
| HpyCH4IV | ACGT | 4 cut(s) | 555, 1182, 2227, 2983 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 107, 812, 2081, 2285, 2393, 2441 |
| HpySE526I | ACGT | 4 cut(s) | 555, 1182, 2227, 2983 |
| HspAI | GCGC | 1 cut(s) | 452 |
| Ksp22I | TGATCA | 1 cut(s) | 1317 |
| LguI | GCTCTTC | 2 cut(s) | 2184, 2841 |
| LmnI | GCTCC | 5 cut(s) | 958, 1017, 1139, 1503, 3319 |
| LweI | GCATC | 9 cut(s) | 460, 652, 665, 815, 972, 1561, 1894, 2516, 2614 |
| MaeI | CTAG | 8 cut(s) | 21, 282, 816, 1016, 2267, 2789, 2906, 3293 |
| MaeII | ACGT | 4 cut(s) | 555, 1182, 2227, 2983 |
| MaeIII | GTNAC | 4 cut(s) | 455, 728, 1228, 2101 |
| MbiI | CCGCTC | 1 cut(s) | 2177 |
| MfeI | CAATTG | 1 cut(s) | 2064 |
| MflI | RGATCY | 2 cut(s) | 2701, 2962 |
| MhlI | GDGCHC | 4 cut(s) | 299, 1500, 2739, 3324 |
| MlyI | GAGTC | 3 cut(s) | 2149, 2588, 2594 |
| MmeI | TCCRAC | 4 cut(s) | 214, 873, 966, 3212 |
| Mph1103I | ATGCAT | 2 cut(s) | 1105, 1909 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1026, 1059 |
| MseI | TTAA | 8 cut(s) | 71, 354, 531, 765, 1323, 1428, 2418, 3006 |
| MslI | CAYNNNNRTG | 5 cut(s) | 161, 282, 971, 2123, 2730 |
| MspA1I | CMGCKG | 1 cut(s) | 3224 |
| MspI | CCGG | 3 cut(s) | 350, 834, 3211 |
| MspR9I | CCNGG | 6 cut(s) | 562, 726, 755, 834, 1065, 1340 |
| MunI | CAATTG | 1 cut(s) | 2064 |
| Mva1269I | GAATGC | 2 cut(s) | 1142, 1297 |
| MvaI | CCWGG | 5 cut(s) | 562, 726, 755, 1065, 1340 |
| MvnI | CGCG | 1 cut(s) | 454 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 107, 812, 2081, 2285, 2393, 2441 |
| NciI | CCSGG | 1 cut(s) | 834 |
| NcoI | CCATGG | 1 cut(s) | 1986 |
| NlaIV | GGNNCC | 4 cut(s) | 1013, 1069, 1499, 3183 |
| NsiI | ATGCAT | 2 cut(s) | 1105, 1909 |
| NspI | RCATGY | 2 cut(s) | 1417, 1948 |
| NspV | TTCGAA | 1 cut(s) | 1399 |
| PaeI | GCATGC | 1 cut(s) | 1948 |
| PaeR7I | CTCGAG | 1 cut(s) | 2489 |
| PagI | TCATGA | 2 cut(s) | 25, 826 |
| PciSI | GCTCTTC | 2 cut(s) | 2184, 2841 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1920 |
| PctI | GAATGC | 2 cut(s) | 1142, 1297 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1026, 1059 |
| PfeI | GAWTC | 6 cut(s) | 395, 865, 978, 1060, 1738, 1871 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1752 |
| PleI | GAGTC | 3 cut(s) | 2148, 2587, 2594 |
| PmaCI | CACGTG | 1 cut(s) | 2984 |
| PmlI | CACGTG | 1 cut(s) | 2984 |
| PpsI | GAGTC | 3 cut(s) | 2148, 2587, 2594 |
| Ppu21I | YACGTR | 2 cut(s) | 2228, 2984 |
| PsiI | TTATAA | 1 cut(s) | 2516 |
| Psp124BI | GAGCTC | 1 cut(s) | 299 |
| Psp6I | CCWGG | 5 cut(s) | 560, 724, 753, 1063, 1338 |
| PspCI | CACGTG | 1 cut(s) | 2984 |
| PspEI | GGTNACC | 1 cut(s) | 728 |
| PspFI | CCCAGC | 1 cut(s) | 1948 |
| PspGI | CCWGG | 5 cut(s) | 560, 724, 753, 1063, 1338 |
| PspN4I | GGNNCC | 4 cut(s) | 1013, 1069, 1499, 3183 |
| PspPI | GGNCC | 8 cut(s) | 389, 626, 718, 769, 902, 2024, 2800, 3152 |
| PstI | CTGCAG | 1 cut(s) | 2110 |
| PstNI | CAGNNNCTG | 2 cut(s) | 760, 3227 |
| PsuI | RGATCY | 2 cut(s) | 2701, 2962 |
| PvuII | CAGCTG | 1 cut(s) | 3224 |
| RsaI | GTAC | 5 cut(s) | 1177, 1606, 2933, 3101, 3215 |
| RsaNI | GTAC | 5 cut(s) | 1176, 1605, 2932, 3100, 3214 |
| RseI | CAYNNNNRTG | 5 cut(s) | 161, 282, 971, 2123, 2730 |
| SacI | GAGCTC | 1 cut(s) | 299 |
| SapI | GCTCTTC | 2 cut(s) | 2184, 2841 |
| SaqAI | TTAA | 8 cut(s) | 71, 354, 531, 765, 1323, 1428, 2418, 3006 |
| Sau96I | GGNCC | 8 cut(s) | 389, 626, 718, 769, 902, 2024, 2800, 3152 |
| SchI | GAGTC | 3 cut(s) | 2149, 2588, 2594 |
| ScrFI | CCNGG | 6 cut(s) | 562, 726, 755, 834, 1065, 1340 |
| SduI | GDGCHC | 4 cut(s) | 299, 1500, 2739, 3324 |
| SfaNI | GCATC | 9 cut(s) | 460, 652, 665, 815, 972, 1561, 1894, 2516, 2614 |
| SfcI | CTRYAG | 1 cut(s) | 2106 |
| Sfr274I | CTCGAG | 1 cut(s) | 2489 |
| SfuI | TTCGAA | 1 cut(s) | 1399 |
| SinI | GGWCC | 2 cut(s) | 718, 2800 |
| SlaI | CTCGAG | 1 cut(s) | 2489 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 161, 282, 971, 2123, 2730 |
| SmlI | CTYRAG | 9 cut(s) | 931, 1472, 1514, 2307, 2489, 2895, 2927, 2966, 3166 |
| SmoI | CTYRAG | 9 cut(s) | 931, 1472, 1514, 2307, 2489, 2895, 2927, 2966, 3166 |
| SphI | GCATGC | 1 cut(s) | 1948 |
| SsiI | CCGC | 5 cut(s) | 1789, 2175, 2444, 2803, 2987 |
| SspI | AATATT | 4 cut(s) | 48, 274, 1135, 2440 |
| SspMI | CTAG | 8 cut(s) | 21, 282, 816, 1016, 2267, 2789, 2906, 3293 |
| SstI | GAGCTC | 1 cut(s) | 299 |
| StyD4I | CCNGG | 6 cut(s) | 560, 724, 753, 832, 1063, 1338 |
| StyI | CCWWGG | 4 cut(s) | 1746, 1986, 2403, 3186 |
| TaaI | ACNGT | 5 cut(s) | 1223, 1916, 1939, 2661, 2868 |
| TaiI | ACGT | 4 cut(s) | 558, 1185, 2230, 2986 |
| TaqI | TCGA | 9 cut(s) | 536, 775, 909, 1264, 1399, 1736, 2185, 2213, 2490 |
| TatI | WGTACW | 1 cut(s) | 1175 |
| TfiI | GAWTC | 6 cut(s) | 395, 865, 978, 1060, 1738, 1871 |
| Tru1I | TTAA | 8 cut(s) | 71, 354, 531, 765, 1323, 1428, 2418, 3006 |
| Tru9I | TTAA | 8 cut(s) | 71, 354, 531, 765, 1323, 1428, 2418, 3006 |
| TscAI | CASTG | 5 cut(s) | 142, 273, 1570, 2921, 3067 |
| TspGWI | ACGGA | 1 cut(s) | 1593 |
| TspRI | CASTG | 5 cut(s) | 142, 273, 1570, 2921, 3067 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1752 |
| VpaK11BI | GGWCC | 2 cut(s) | 718, 2800 |
| XapI | RAATTY | 7 cut(s) | 822, 856, 878, 1446, 1464, 2856, 3309 |
| XceI | RCATGY | 2 cut(s) | 1417, 1948 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1606 |
| XhoI | CTCGAG | 1 cut(s) | 2489 |
| XmiI | GTMKAC | 1 cut(s) | 1284 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1026, 1059 |
| XspI | CTAG | 8 cut(s) | 21, 282, 816, 1016, 2267, 2789, 2906, 3293 |
| Zsp2I | ATGCAT | 2 cut(s) | 1105, 1909 |