Rmu_sc0009404.1_g000009

RAP

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009404.1
Physical Location & Seq
Forward (+)
38277 .. 41646
3370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009404.1_g000009.1.cds

Sequence Viewer

Length: 2103 bp
atgactatggatttgtcttttgtgcagatcattaacaaagacaatgcccatgaaggggacagagaaaccgatggctatgtcattcgtcagggaatagtagttgttcttcgaagtgctcagaagcagaagcagaagcagctcatcccaaagttgaaagttgccagcaaatcaactggaaacattacagcggtaaacatgcaaggattacttaatgccttctcttatcaaattcgtttgaaacccgaaattgctcacaagcttcccgtgacaaaaactgggctcctctcccaaaaacttgacctggtttttccaagaagaaattgcttcaatgccattagctcaacaagtgtcgatggtgatggagaagaagaaagaggtaatttggattgggaattggagtttcttggagagcttgacaagaagacgaaaaaccaacccacatctaggctgcttcaagaaactgagggcatggattggtgtgttagggcaagaaagactgctctaaagtcgattgaagccaagggctggtctcatagaatggaagatatgattaccaaaaagaagaaaaagaaaaagaacaagaagaaactggtgacgaaaaacaaaatgaataagaaaagcaagcaagtcgaagaagaccttgattcagaggaagactttgatatgcaagatatagatgcattaggtggttctaccgatttaagaacaactgtgagtatgctgggaggtgggatgtttgaagagaaaaaggagaagactatgcaagattttgttcagaggctttcccaattctcagggccatctgatcgcaagaaagaaatcaacttgaacaaagcaattgttgaagcacaaactgcagaagaagtattggaggttactgctgagacaataatggctgtggggaaaggcttgagtccctctcccctctctcctttgaacattgccactgctcttcatcgaattgctaagaacatggagaaagtttcgatgctagagacacgtaggttggcttttgctcgtcaaagagagatgtctatacttgtaggaatagcaatgacagccttaccagagtgttcagctcaaggtatttctaatatctcgtgggcattgtctaagataggaggtgagctgctttacttgtcagaaatggatagagttgcagaggtggccttaaccaaggttggggagtttaattcacagaatgtggctaatatcgcgggggcttttgcttccatgaagcactctgcttctgatctttttcctgagttatcaaagagggcatcagttataattcacactttccaagagcaagagcttgctcaggttttgtgggcttttgcttctttacatgagtctgctgaacctttgctggaatctttagataatgttttcaaagatgcaaaccaatttatatgctgcccaaacaaagaacaatcgaatctcaaccgagaaaatggtgtggacaacataggagatcttgacatcaatggcattgcacaagctcctgtgctcagtttcagaagggatcagcttgggaacatagcgtggtcttatgctgttctaggacaaatggaccgcagttttttttcccatgtgtggaggactctttgccaatttgaagagcaaaaaatttcagaacagtatagggaggatgtcatgtttgcttctcaagttcatctagtgaaccagtgcttgaagcttgagtacccacatcttcatttatctttaaagagagatcttgaggagaaaatagcacgtgccggtaaaactaagagatttaaccagaaaatgacttcatcttttcaaaaggaggtcgctcatcttcttgttagcactggccttgattggatcaaagagtatgatgtggacgggtacactgtggatgctgttgtaattgataagaagattgctatggagattgatggcccaactcatttctcaagaaatactggggttcccttgggacacactatactcaaacgccgctacataactgcagctggttggaaagttgtgtctttgtctcatcaagagtgggaagaacttgaaggtgggtttgagcagctagactacctaagagaaattttgaaggagcacctttag

Protein Analysis

700

Amino Acids

79.03

Weight (kDa)

6.79

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1289
AccB7I CCANNNNNTGG 1 cut(s) 525
AccII CGCG 1 cut(s) 1217
AciI CCGC 4 cut(s) 188, 1217, 1576, 1984
AclWI GGATC 2 cut(s) 1533, 1856
AcsI RAATTY 3 cut(s) 228, 1629, 2082
AcvI CACGTG 1 cut(s) 1757
AfaI GTAC 2 cut(s) 1706, 1874
AfiI CCNNNNNNNGG 6 cut(s) 54, 55, 444, 525, 1182, 1596
AflIII ACRYGT 1 cut(s) 998
AjnI CCWGG 1 cut(s) 300
Alw21I GWGCWC 3 cut(s) 118, 1512, 2097
Alw26I GTCTC 4 cut(s) 534, 878, 989, 2028
AlwI GGATC 2 cut(s) 1533, 1856
AoxI GGCC 4 cut(s) 797, 1167, 1837, 1924
ApeKI GCWGC 6 cut(s) 136, 448, 1129, 1416, 1997, 2062
ApoI RAATTY 3 cut(s) 228, 1629, 2082
ArsI GACNNNNNNTTYG 1 cut(s) 27
AspS9I GGNCC 3 cut(s) 797, 1573, 1925
AsuHPI GGTGA 3 cut(s) 368, 604, 1136
AsuII TTCGAA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 1573
BanII GRGCYC 1 cut(s) 282
BarI GAAGNNNNNNTAC 4 cut(s) 90, 122, 1688, 1720
BauI CACGAG 1 cut(s) 1099
BbrPI CACGTG 1 cut(s) 1757
BbsI GAAGAC 4 cut(s) 428, 642, 660, 761
Bbv12I GWGCWC 3 cut(s) 118, 1512, 2097
BbvI GCAGC 6 cut(s) 148, 435, 1116, 1403, 2009, 2074
BccI CCATC 5 cut(s) 65, 347, 353, 808, 1916
BcgI CGANNNNNNTGC 2 cut(s) 610, 644
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 4 cut(s) 534, 878, 989, 2028
BfaI CTAG 5 cut(s) 444, 992, 1562, 1679, 2066
BfmI CTRYAG 2 cut(s) 855, 1995
BglII AGATCT 2 cut(s) 1474, 1735
BisI GCNGC 7 cut(s) 137, 449, 1130, 1417, 1984, 1998, 2063
BlsI GCNGC 7 cut(s) 138, 450, 1131, 1418, 1985, 1999, 2064
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 1573
BmgT120I GGNCC 3 cut(s) 797, 1573, 1925
BmiI GGNNCC 2 cut(s) 281, 1956
BmrFI CCNGG 1 cut(s) 302
BmrI ACTGGG 2 cut(s) 285, 1959
BmsI GCATC 5 cut(s) 667, 978, 1289, 1387, 1873
BmuI ACTGGG 2 cut(s) 285, 1959
BpiI GAAGAC 4 cut(s) 428, 642, 660, 761
BplI GAGNNNNNCTC 2 cut(s) 904, 936
Bpu10I CCTNAGC 1 cut(s) 1320
Bpu14I TTCGAA 1 cut(s) 109
BpuEI CTTGAG 6 cut(s) 931, 1065, 1653, 1721, 1760, 1924
BsaAI YACGTR 2 cut(s) 1001, 1757
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 3 cut(s) 519, 1176, 1959
Bsc4I CCNNNNNNNGG 6 cut(s) 54, 55, 444, 525, 1182, 1596
Bse118I RCCGGY 1 cut(s) 1760
Bse1I ACTGG 6 cut(s) 178, 280, 594, 1687, 1840, 1954
Bse3DI GCAATG 3 cut(s) 939, 1059, 1491
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 519, 1176, 1959
BseGI GGATG 4 cut(s) 141, 738, 1657, 1888
BseLI CCNNNNNNNGG 6 cut(s) 54, 55, 444, 525, 1182, 1596
BseMI GCAATG 3 cut(s) 939, 1059, 1491
BseMII CTCAG 7 cut(s) 131, 453, 807, 873, 1254, 1334, 1525
BseNI ACTGG 6 cut(s) 178, 280, 594, 1687, 1840, 1954
BseRI GAGGAG 2 cut(s) 272, 1757
BseXI GCAGC 6 cut(s) 148, 435, 1116, 1403, 2009, 2074
BseYI CCCAGC 1 cut(s) 721
BsgI GTGCAG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 1217
BshFI GGCC 4 cut(s) 799, 1169, 1839, 1926
BsiHKAI GWGCWC 3 cut(s) 118, 1512, 2097
BsiSI CCGG 1 cut(s) 1761
BslFI GGGAC 3 cut(s) 71, 900, 1977
BslI CCNNNNNNNGG 6 cut(s) 54, 55, 444, 525, 1182, 1596
BsmAI GTCTC 4 cut(s) 534, 878, 989, 2028
BsmFI GGGAC 3 cut(s) 71, 900, 1977
BsnI GGCC 4 cut(s) 799, 1169, 1839, 1926
Bso31I GGTCTC 1 cut(s) 534
Bsp119I TTCGAA 1 cut(s) 109
Bsp1286I GDGCHC 4 cut(s) 118, 282, 1512, 2097
Bsp143I GATC 7 cut(s) 27, 805, 1252, 1474, 1525, 1735, 1848
BspACI CCGC 4 cut(s) 188, 1217, 1576, 1984
BspANI GGCC 4 cut(s) 799, 1169, 1839, 1926
BspCNI CTCAG 7 cut(s) 130, 454, 806, 874, 1255, 1333, 1524
BspFNI CGCG 1 cut(s) 1217
BspLI GGNNCC 2 cut(s) 281, 1956
BspMAI CTGCAG 2 cut(s) 859, 1999
BspPI GGATC 2 cut(s) 1533, 1856
BspQI GCTCTTC 2 cut(s) 957, 1614
BspT104I TTCGAA 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 534
BsrDI GCAATG 3 cut(s) 939, 1059, 1491
BsrFI RCCGGY 1 cut(s) 1760
BsrI ACTGG 6 cut(s) 178, 280, 594, 1687, 1840, 1954
BssAI RCCGGY 1 cut(s) 1760
BssECI CCNNGG 3 cut(s) 519, 1176, 1959
BssMI GATC 7 cut(s) 27, 805, 1252, 1474, 1525, 1735, 1848
BssSI CACGAG 1 cut(s) 1099
BssT1I CCWWGG 3 cut(s) 519, 1176, 1959
Bst2BI CACGAG 1 cut(s) 1099
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 3 cut(s) 712, 1641, 1879
Bst6I CTCTTC 3 cut(s) 735, 957, 1614
BstAPI GCANNNNNTGC 1 cut(s) 854
BstBAI YACGTR 2 cut(s) 1001, 1757
BstBI TTCGAA 1 cut(s) 109
BstC8I GCNNGC 3 cut(s) 163, 623, 1317
BstF5I GGATG 4 cut(s) 141, 738, 1657, 1888
BstFNI CGCG 1 cut(s) 1217
BstKTI GATC 7 cut(s) 30, 808, 1255, 1477, 1528, 1738, 1851
BstMAI GTCTC 4 cut(s) 534, 878, 989, 2028
BstMBI GATC 7 cut(s) 27, 805, 1252, 1474, 1525, 1735, 1848
BstMWI GCNNNNNNNGC 5 cut(s) 136, 854, 1058, 1166, 1214
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 2 cut(s) 855, 1995
BstUI CGCG 1 cut(s) 1217
BstV1I GCAGC 6 cut(s) 148, 435, 1116, 1403, 2009, 2074
BstV2I GAAGAC 4 cut(s) 428, 642, 660, 761
BstX2I RGATCY 2 cut(s) 1474, 1735
BstYI RGATCY 2 cut(s) 1474, 1735
BsuRI GGCC 4 cut(s) 799, 1169, 1839, 1926
BtsCI GGATG 4 cut(s) 141, 738, 1657, 1888
BtsI GCAGTG 1 cut(s) 945
BtsIMutI CAGTG 4 cut(s) 945, 1694, 1833, 1875
Cac8I GCNNGC 3 cut(s) 163, 623, 1317
Cfr10I RCCGGY 1 cut(s) 1760
Cfr13I GGNCC 3 cut(s) 797, 1573, 1925
CsiI ACCWGGT 1 cut(s) 300
Csp6I GTAC 2 cut(s) 1705, 1873
CviAII CATG 8 cut(s) 50, 196, 469, 973, 1234, 1349, 1592, 1657
CviQI GTAC 2 cut(s) 1705, 1873
DpnI GATC 7 cut(s) 29, 807, 1254, 1476, 1527, 1737, 1850
DpnII GATC 7 cut(s) 27, 805, 1252, 1474, 1525, 1735, 1848
DraI TTTAAA 1 cut(s) 1728
Eam1104I CTCTTC 3 cut(s) 735, 957, 1614
EarI CTCTTC 3 cut(s) 735, 957, 1614
Eco130I CCWWGG 3 cut(s) 519, 1176, 1959
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 1573
Eco72I CACGTG 1 cut(s) 1757
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 3 cut(s) 519, 1176, 1959
EcoT22I ATGCAT 1 cut(s) 682
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 3 cut(s) 519, 1176, 1959
FaeI CATG 8 cut(s) 53, 199, 472, 976, 1237, 1352, 1595, 1660
FalI AAGNNNNNCTT 4 cut(s) 192, 224, 624, 656
FaqI GGGAC 3 cut(s) 71, 900, 1977
FatI CATG 8 cut(s) 49, 195, 468, 972, 1233, 1348, 1591, 1656
FauI CCCGC 1 cut(s) 1210
Fnu4HI GCNGC 7 cut(s) 137, 449, 1130, 1417, 1984, 1998, 2063
FokI GGATG 4 cut(s) 128, 745, 1664, 1895
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 7 cut(s) 137, 449, 1130, 1417, 1984, 1998, 2063
FspBI CTAG 5 cut(s) 444, 992, 1562, 1679, 2066
GluI GCNGC 7 cut(s) 137, 449, 1130, 1417, 1984, 1998, 2063
GsaI CCCAGC 1 cut(s) 725
HaeIII GGCC 4 cut(s) 799, 1169, 1839, 1926
HapII CCGG 1 cut(s) 1761
Hin1II CATG 8 cut(s) 53, 199, 472, 976, 1237, 1352, 1595, 1660
HindIII AAGCTT 2 cut(s) 257, 1697
HinfI GANTC 6 cut(s) 644, 913, 1352, 1373, 1438, 1603
HpaII CCGG 1 cut(s) 1761
HphI GGTGA 3 cut(s) 368, 604, 1136
Hpy166II GTNNAC 5 cut(s) 193, 1462, 1684, 1867, 1875
Hpy188I TCNGA 8 cut(s) 120, 649, 777, 805, 1144, 1252, 1520, 1636
Hpy188III TCNNGA 6 cut(s) 455, 1262, 1478, 1739, 1941, 2030
Hpy8I GTNNAC 5 cut(s) 193, 1462, 1684, 1867, 1875
HpyAV CCTTC 5 cut(s) 47, 226, 1515, 2042, 2083
HpyCH4III ACNGT 3 cut(s) 712, 1641, 1879
HpyCH4IV ACGT 2 cut(s) 1000, 1756
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 854, 1058, 1166, 1214
HpySE526I ACGT 2 cut(s) 1000, 1756
Hsp92II CATG 8 cut(s) 53, 199, 472, 976, 1237, 1352, 1595, 1660
Kzo9I GATC 7 cut(s) 27, 805, 1252, 1474, 1525, 1735, 1848
LguI GCTCTTC 2 cut(s) 957, 1614
LmnI GCTCC 3 cut(s) 285, 1507, 2092
Lsp1109I GCAGC 6 cut(s) 148, 435, 1116, 1403, 2009, 2074
LweI GCATC 5 cut(s) 667, 978, 1289, 1387, 1873
MabI ACCWGGT 1 cut(s) 300
MaeI CTAG 5 cut(s) 444, 992, 1562, 1679, 2066
MaeII ACGT 2 cut(s) 1000, 1756
MaeIII GTNAC 3 cut(s) 265, 592, 874
MalI GATC 7 cut(s) 29, 807, 1254, 1476, 1527, 1737, 1850
MboI GATC 7 cut(s) 27, 805, 1252, 1474, 1525, 1735, 1848
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 2 cut(s) 1474, 1735
MhlI GDGCHC 4 cut(s) 118, 282, 1512, 2097
MlyI GAGTC 3 cut(s) 922, 1361, 1597
MmeI TCCRAC 1 cut(s) 1985
Mph1103I ATGCAT 1 cut(s) 682
MseI TTAA 7 cut(s) 33, 210, 701, 1172, 1191, 1727, 1779
MspA1I CMGCKG 2 cut(s) 188, 2000
MspI CCGG 1 cut(s) 1761
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 837
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 1217
MwoI GCNNNNNNNGC 5 cut(s) 136, 854, 1058, 1166, 1214
NdeII GATC 7 cut(s) 27, 805, 1252, 1474, 1525, 1735, 1848
NlaIII CATG 8 cut(s) 53, 199, 472, 976, 1237, 1352, 1595, 1660
NlaIV GGNNCC 2 cut(s) 281, 1956
NmuCI GTSAC 2 cut(s) 265, 592
NsiI ATGCAT 1 cut(s) 682
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 1 cut(s) 109
PciSI GCTCTTC 2 cut(s) 957, 1614
PfeI GAWTC 3 cut(s) 644, 1373, 1438
PflMI CCANNNNNTGG 1 cut(s) 525
PkrI GCNGC 7 cut(s) 138, 450, 1131, 1418, 1985, 1999, 2064
PleI GAGTC 3 cut(s) 921, 1360, 1597
PmaCI CACGTG 1 cut(s) 1757
PmlI CACGTG 1 cut(s) 1757
PpsI GAGTC 3 cut(s) 921, 1360, 1597
Ppu21I YACGTR 2 cut(s) 1001, 1757
PsiI TTATAA 1 cut(s) 1289
Psp6I CCWGG 1 cut(s) 300
PspCI CACGTG 1 cut(s) 1757
PspFI CCCAGC 1 cut(s) 721
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 281, 1956
PspPI GGNCC 3 cut(s) 797, 1573, 1925
PstI CTGCAG 2 cut(s) 859, 1999
PsuI RGATCY 2 cut(s) 1474, 1735
PvuII CAGCTG 1 cut(s) 2000
RsaI GTAC 2 cut(s) 1706, 1874
RsaNI GTAC 2 cut(s) 1705, 1873
SapI GCTCTTC 2 cut(s) 957, 1614
SaqAI TTAA 7 cut(s) 33, 210, 701, 1172, 1191, 1727, 1779
SatI GCNGC 7 cut(s) 137, 449, 1130, 1417, 1984, 1998, 2063
Sau3AI GATC 7 cut(s) 27, 805, 1252, 1474, 1525, 1735, 1848
Sau96I GGNCC 3 cut(s) 797, 1573, 1925
SchI GAGTC 3 cut(s) 922, 1361, 1597
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 4 cut(s) 118, 282, 1512, 2097
SexAI ACCWGGT 1 cut(s) 300
SfaNI GCATC 5 cut(s) 667, 978, 1289, 1387, 1873
SfcI CTRYAG 2 cut(s) 855, 1995
SfuI TTCGAA 1 cut(s) 109
SinI GGWCC 1 cut(s) 1573
SmlI CTYRAG 6 cut(s) 910, 1080, 1668, 1700, 1739, 1939
SmoI CTYRAG 6 cut(s) 910, 1080, 1668, 1700, 1739, 1939
SsiI CCGC 4 cut(s) 188, 1217, 1576, 1984
SspMI CTAG 5 cut(s) 444, 992, 1562, 1679, 2066
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 3 cut(s) 519, 1176, 1959
TaaI ACNGT 3 cut(s) 712, 1641, 1879
TaiI ACGT 2 cut(s) 1003, 1759
TaqI TCGA 7 cut(s) 109, 351, 509, 630, 958, 986, 1436
TauI GCSGC 1 cut(s) 1986
TfiI GAWTC 3 cut(s) 644, 1373, 1438
Tru1I TTAA 7 cut(s) 33, 210, 701, 1172, 1191, 1727, 1779
Tru9I TTAA 7 cut(s) 33, 210, 701, 1172, 1191, 1727, 1779
TscAI CASTG 4 cut(s) 952, 1694, 1840, 1882
TseFI GTSAC 2 cut(s) 265, 592
TseI GCWGC 6 cut(s) 136, 448, 1129, 1416, 1997, 2062
Tsp45I GTSAC 2 cut(s) 265, 592
TspDTI ATGAA 7 cut(s) 66, 623, 944, 1250, 1664, 1706, 1785
TspRI CASTG 4 cut(s) 952, 1694, 1840, 1882
Van91I CCANNNNNTGG 1 cut(s) 525
VpaK11BI GGWCC 1 cut(s) 1573
XapI RAATTY 3 cut(s) 228, 1629, 2082
XceI RCATGY 1 cut(s) 199
XspI CTAG 5 cut(s) 444, 992, 1562, 1679, 2066
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.