Prupe.6G118500_v2.0.a1

RAP

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
8703252 .. 8707052
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G118500.2

Sequence Viewer

Length: 2007 bp
ATGCAAAGCTTGCTTAACACCTTCCCTCATCAAATTTGCTTCAAACCTTTCACTTTTAATCCTGATATTGCTCATAAGCTTCCAATAACAAGAACTGGGCTCTTAGCTCAAAGGCTTGAGCTTGTCCTTCCAAGAAGATATTGCGTAAATGTAGGCGCAGATAATGCTGCTATTAGCTCAAGGAGTGTTGAGAGTGACGATGAGGAAGAAGAAGAAAATGGAGATGGTAATATGGATTGGGAGTTGGAGTTTCTTGGAGATCTTGACCCTCTGGGTTTCCAGGCCCCCAACAAGAGGAAAAAGCTAAAAAAGTCTAAGTCGCTTGAAGAGAGTGAGGGAATGGATTGGTGTGTGAGGGCAAGAAAGACTGCTCTTAAATCGATTGAGGCGAAGGGCTTATCTCATCTAATGGAAGATATGATGACAGTAAAGAAGAAAAAGAAGAACAAGAAGAAGAAGCTGGGGAAAATAGAGAAAGTGAATAAGAAAATCAAGGAAGTTGAAGAAGATTTGGATATTGATTCCGAGGAAGACTTTGATATGCAAGATACAAATACTCTTAATGGTGCTAGTCATTTAAGAAGAACTGTGAGTGTGCTGGCAGGTGGGATGTTTGAAGAGAAAAAGGAGAAGACCATGGAAGAGTTTGTTCAGAGGCTTTCCCAATTTTCGGGGCCATCTGATCGTAAGAAAGAAATCAACTTGAATAGAGCTATTATTGACGCACAAACTGCAGAAGAAGTGGTGGAGGTTACTGCAGAGACAATCATGGCTGTTGGGAAAGGCTTGAGTCCCTCACCTCTCTCTCCTTTGAACATTGCCACCGCTCTTCATCGAATTGCTAAGAATATGGAGAAAGTTTCAATGATAGAGACACGTAGGTTGGCCTTTGCTCGCCAAAGAGAGATGTCTATGCTTGTAGGAATAGCAATGACAGCCTTACCAGACTGTTCAGCTCAAGGTATCTCTAATGTCTCGTGGGCATTGTCTAAGATTGGTGGTGATCTGATTTACTTGTCAGAAATGGATAGAGTTGCGGAGGTGGCCTTAACCAAGGTTGGGGAGTTTAATTCACAGAATGTGGCTAATATTGCAGGTGCTTTTGCTTCAATGAAGCACTCTGCTCCTGATCTCTTTTCTGAATTATCCAAAAGGGCATCAGATATAATTCATACTTTCCAGGAGCAAGAGCTTGCTCAGGTGTTGTGGGCTTTTGCTTCTTTATCTGAGTCTGCTGAACCTTTGCTGGAATCTTTAGATAATGTTTTCAATGATGAAAGCCAATTTATATGCTACTCAAGCAAAGAAAATTCAGAATTTGACAGCGAAAATGGTGTGGACAACATAGGAGATCTTGACTTTGATGGCGTTAGAAGCTCCCCTGTTCTCAGTTTCAGAAGGGATCAGCTTGGGAATATAGCTTGGTCTTATGCTGTTATTGGACAAATGGATCGGACTTTCTTTTCCCATGTGTGGAGAACTCTGAGCCAATTTGAAGAACAAAGGATTTCAGAGCAGTATAGGGAGGATATCATGTTTGCTTCTCAGGTTCATCTAGTGAACCAGTGCTTGAAGCTTGAGTACCCACACCTTCAGTTATCTTTAAGGGAAGATCTTGAGGAGAAAATTGCTCGTGCTGGTAAAACTAAGAGATTTAATCAGAAAATGACATCATCATTTCAAAGGGAAGTTGCCCGTCTTCTTGTTAGCACTGGTCTCGATTGGGTCAAAGAATATGTTGTGGATGGGTACACTTTGGATGCTGTATTGATTGATAAGAAGGTTGCTATGGAGATTGATGGCCCAACGCATTTCTCAAGAAATACTGGGGTGCCCTTGGGACATACTATGCTAAAAAGGCGCTACATAACTGCTGCTGGTTGGAAAGTTGTGTCGTTATCTCATCAAGAGTGGGAAGAACGTCAAGGTGGTTTTGAGCAGCTAGAGTACCTAAGAGAAATTCTGAAGGAGCACTTATATGTGGACAAAAATACCATCCTCGTATAG

Protein Analysis

669

Amino Acids

75.72

Weight (kDa)

5.51

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 593, 1085
Acc36I ACCTGC 2 cut(s) 593, 1085
AccB1I GGYRCC 1 cut(s) 1831
AccBSI CCGCTC 1 cut(s) 827
AciI CCGC 2 cut(s) 825, 1037
AclWI GGATC 2 cut(s) 1410, 1458
AcsI RAATTY 4 cut(s) 33, 1309, 1316, 1959
AcuI CTGAAG 2 cut(s) 1577, 1985
AfaI GTAC 3 cut(s) 1583, 1751, 1949
AfiI CCNNNNNNNGG 4 cut(s) 294, 670, 1059, 1473
AflIII ACRYGT 1 cut(s) 875
AjnI CCWGG 2 cut(s) 279, 1179
Alw21I GWGCWC 1 cut(s) 1974
Alw26I GTCTC 4 cut(s) 755, 866, 979, 1721
AlwI GGATC 2 cut(s) 1410, 1458
AoxI GGCC 5 cut(s) 282, 674, 885, 1044, 1801
ApeKI GCWGC 3 cut(s) 167, 1874, 1939
ApoI RAATTY 4 cut(s) 33, 1309, 1316, 1959
AspLEI GCGC 2 cut(s) 158, 1863
AspS9I GGNCC 3 cut(s) 283, 674, 1802
AsuHPI GGTGA 2 cut(s) 789, 1013
BaeGI GKGCMC 1 cut(s) 1836
BanI GGYRCC 1 cut(s) 1831
BanII GRGCYC 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 1565, 1597
BauI CACGAG 2 cut(s) 976, 1632
BbsI GAAGAC 3 cut(s) 537, 638, 1691
Bbv12I GWGCWC 1 cut(s) 1974
BbvI GCAGC 3 cut(s) 154, 1861, 1951
BccI CCATC 6 cut(s) 218, 685, 1358, 1739, 1793, 2003
BcgI CGANNNNNNTGC 2 cut(s) 1699, 1733
BciT130I CCWGG 2 cut(s) 281, 1181
BcoDI GTCTC 4 cut(s) 755, 866, 979, 1721
BfaI CTAG 3 cut(s) 570, 1556, 1943
BfmI CTRYAG 2 cut(s) 732, 756
BfoI RGCGCY 1 cut(s) 1864
BfuAI ACCTGC 2 cut(s) 593, 1085
BglII AGATCT 3 cut(s) 259, 1351, 1612
BisI GCNGC 3 cut(s) 168, 1875, 1940
BlsI GCNGC 3 cut(s) 169, 1876, 1941
Bme1390I CCNGG 2 cut(s) 281, 1181
BmgT120I GGNCC 3 cut(s) 283, 674, 1802
BmiI GGNNCC 3 cut(s) 285, 675, 1833
BmrFI CCNGG 2 cut(s) 281, 1181
BmrI ACTGGG 2 cut(s) 105, 1836
BmsI GCATC 2 cut(s) 1166, 1750
BmuI ACTGGG 2 cut(s) 105, 1836
BpiI GAAGAC 3 cut(s) 537, 638, 1691
Bpu10I CCTNAGC 1 cut(s) 1197
BpuEI CTTGAG 8 cut(s) 137, 163, 808, 942, 1282, 1598, 1637, 1801
Bsa29I ATCGAT 1 cut(s) 380
BsaAI YACGTR 1 cut(s) 878
BsaI GGTCTC 1 cut(s) 1721
BsaJI CCNNGG 4 cut(s) 525, 636, 1053, 1836
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 4 cut(s) 294, 670, 1059, 1473
Bse1I ACTGG 4 cut(s) 100, 1564, 1717, 1831
Bse3DI GCAATG 2 cut(s) 816, 936
BseBI CCWGG 2 cut(s) 281, 1181
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 4 cut(s) 525, 636, 1053, 1836
BseGI GGATG 4 cut(s) 615, 1750, 1765, 1995
BseLI CCNNNNNNNGG 4 cut(s) 294, 670, 1059, 1473
BseMI GCAATG 2 cut(s) 816, 936
BseMII CTCAG 5 cut(s) 1211, 1218, 1402, 1475, 1559
BseNI ACTGG 4 cut(s) 100, 1564, 1717, 1831
BseRI GAGGAG 1 cut(s) 1634
BseSI GKGCMC 1 cut(s) 1836
BseXI GCAGC 3 cut(s) 154, 1861, 1951
BseYI CCCAGC 1 cut(s) 460
BshFI GGCC 5 cut(s) 284, 676, 887, 1046, 1803
BshNI GGYRCC 1 cut(s) 1831
BshVI ATCGAT 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 1974
BslFI GGGAC 2 cut(s) 777, 1854
BslI CCNNNNNNNGG 4 cut(s) 294, 670, 1059, 1473
BsmAI GTCTC 4 cut(s) 755, 866, 979, 1721
BsmFI GGGAC 2 cut(s) 777, 1854
BsnI GGCC 5 cut(s) 284, 676, 887, 1046, 1803
Bso31I GGTCTC 1 cut(s) 1721
Bsp1286I GDGCHC 3 cut(s) 102, 1836, 1974
Bsp143I GATC 8 cut(s) 259, 682, 1003, 1129, 1351, 1402, 1450, 1612
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 2 cut(s) 825, 1037
BspANI GGCC 5 cut(s) 284, 676, 887, 1046, 1803
BspCNI CTCAG 5 cut(s) 1210, 1219, 1401, 1476, 1558
BspDI ATCGAT 1 cut(s) 380
BspLI GGNNCC 3 cut(s) 285, 675, 1833
BspMAI CTGCAG 2 cut(s) 736, 760
BspMI ACCTGC 2 cut(s) 593, 1085
BspPI GGATC 2 cut(s) 1410, 1458
BspQI GCTCTTC 1 cut(s) 834
BspT107I GGYRCC 1 cut(s) 1831
BspTNI GGTCTC 1 cut(s) 1721
BsrBI CCGCTC 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 816, 936
BsrI ACTGG 4 cut(s) 100, 1564, 1717, 1831
BssECI CCNNGG 4 cut(s) 525, 636, 1053, 1836
BssMI GATC 8 cut(s) 259, 682, 1003, 1129, 1351, 1402, 1450, 1612
BssSI CACGAG 2 cut(s) 976, 1632
BssT1I CCWWGG 3 cut(s) 636, 1053, 1836
Bst2BI CACGAG 2 cut(s) 976, 1632
Bst2UI CCWGG 2 cut(s) 281, 1181
Bst4CI ACNGT 3 cut(s) 427, 589, 950
Bst6I CTCTTC 4 cut(s) 321, 612, 636, 834
BstAPI GCANNNNNTGC 3 cut(s) 10, 164, 731
BstBAI YACGTR 1 cut(s) 878
BstC8I GCNNGC 4 cut(s) 11, 600, 895, 1194
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 4 cut(s) 615, 1750, 1765, 1995
BstH2I RGCGCY 1 cut(s) 1864
BstHHI GCGC 2 cut(s) 158, 1863
BstKTI GATC 8 cut(s) 262, 685, 1006, 1132, 1354, 1405, 1453, 1615
BstMAI GTCTC 4 cut(s) 755, 866, 979, 1721
BstMBI GATC 8 cut(s) 259, 682, 1003, 1129, 1351, 1402, 1450, 1612
BstMWI GCNNNNNNNGC 9 cut(s) 10, 164, 731, 935, 1043, 1091, 1299, 1374, 1858
BstNI CCWGG 2 cut(s) 281, 1181
BstSCI CCNGG 2 cut(s) 279, 1179
BstSFI CTRYAG 2 cut(s) 732, 756
BstSLI GKGCMC 1 cut(s) 1836
BstV1I GCAGC 3 cut(s) 154, 1861, 1951
BstV2I GAAGAC 3 cut(s) 537, 638, 1691
BstX2I RGATCY 3 cut(s) 259, 1351, 1612
BstYI RGATCY 3 cut(s) 259, 1351, 1612
Bsu15I ATCGAT 1 cut(s) 380
BsuRI GGCC 5 cut(s) 284, 676, 887, 1046, 1803
BsuTUI ATCGAT 1 cut(s) 380
BtgI CCRYGG 1 cut(s) 636
BtsCI GGATG 4 cut(s) 615, 1750, 1765, 1995
BtsIMutI CAGTG 2 cut(s) 1571, 1710
BveI ACCTGC 2 cut(s) 593, 1085
Cac8I GCNNGC 4 cut(s) 11, 600, 895, 1194
CfoI GCGC 2 cut(s) 158, 1863
Cfr13I GGNCC 3 cut(s) 283, 674, 1802
ClaI ATCGAT 1 cut(s) 380
CseI GACGC 1 cut(s) 731
Csp6I GTAC 3 cut(s) 1582, 1750, 1948
CviAII CATG 4 cut(s) 637, 769, 1469, 1534
CviQI GTAC 3 cut(s) 1582, 1750, 1948
DpnI GATC 8 cut(s) 261, 684, 1005, 1131, 1353, 1404, 1452, 1614
DpnII GATC 8 cut(s) 259, 682, 1003, 1129, 1351, 1402, 1450, 1612
Eam1104I CTCTTC 4 cut(s) 321, 612, 636, 834
EarI CTCTTC 4 cut(s) 321, 612, 636, 834
Eco130I CCWWGG 3 cut(s) 636, 1053, 1836
Eco24I GRGCYC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 1721
Eco32I GATATC 1 cut(s) 1531
Eco57I CTGAAG 2 cut(s) 1577, 1985
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 279, 1179
EcoRV GATATC 1 cut(s) 1531
EcoT14I CCWWGG 3 cut(s) 636, 1053, 1836
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 3 cut(s) 636, 1053, 1836
FaeI CATG 4 cut(s) 640, 772, 1472, 1537
FalI AAGNNNNNCTT 2 cut(s) 1958, 1990
FaqI GGGAC 2 cut(s) 777, 1854
FatI CATG 4 cut(s) 636, 768, 1468, 1533
Fnu4HI GCNGC 3 cut(s) 168, 1875, 1940
FokI GGATG 4 cut(s) 622, 1757, 1772, 1982
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 168, 1875, 1940
FspBI CTAG 3 cut(s) 570, 1556, 1943
GlaI GCGC 2 cut(s) 157, 1862
GluI GCNGC 3 cut(s) 168, 1875, 1940
GsaI CCCAGC 1 cut(s) 464
HaeII RGCGCY 1 cut(s) 1864
HaeIII GGCC 5 cut(s) 284, 676, 887, 1046, 1803
HgaI GACGC 1 cut(s) 731
HhaI GCGC 2 cut(s) 158, 1863
Hin1II CATG 4 cut(s) 640, 772, 1472, 1537
Hin6I GCGC 2 cut(s) 156, 1861
HinP1I GCGC 2 cut(s) 156, 1861
HindIII AAGCTT 3 cut(s) 7, 77, 1574
HinfI GANTC 4 cut(s) 521, 790, 1229, 1250
HphI GGTGA 2 cut(s) 789, 1013
Hpy166II GTNNAC 4 cut(s) 1339, 1561, 1752, 1984
Hpy188III TCNNGA 8 cut(s) 62, 263, 1127, 1355, 1616, 1718, 1818, 1907
Hpy8I GTNNAC 4 cut(s) 1339, 1561, 1752, 1984
HpyAV CCTTC 7 cut(s) 31, 137, 385, 1392, 1601, 1774, 1960
HpyCH4III ACNGT 3 cut(s) 427, 589, 950
HpyCH4IV ACGT 2 cut(s) 877, 1921
HpyCH4V TGCA 5 cut(s) 4, 544, 734, 758, 1094
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 164, 731, 935, 1043, 1091, 1299, 1374, 1858
HpySE526I ACGT 2 cut(s) 877, 1921
Hsp92II CATG 4 cut(s) 640, 772, 1472, 1537
HspAI GCGC 2 cut(s) 156, 1861
Kzo9I GATC 8 cut(s) 259, 682, 1003, 1129, 1351, 1402, 1450, 1612
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 4 cut(s) 1129, 1183, 1382, 1969
Lsp1109I GCAGC 3 cut(s) 154, 1861, 1951
LweI GCATC 2 cut(s) 1166, 1750
MaeI CTAG 3 cut(s) 570, 1556, 1943
MaeII ACGT 2 cut(s) 877, 1921
MaeIII GTNAC 2 cut(s) 194, 751
MalI GATC 8 cut(s) 261, 684, 1005, 1131, 1353, 1404, 1452, 1614
MbiI CCGCTC 1 cut(s) 827
MboI GATC 8 cut(s) 259, 682, 1003, 1129, 1351, 1402, 1450, 1612
MflI RGATCY 3 cut(s) 259, 1351, 1612
MhlI GDGCHC 3 cut(s) 102, 1836, 1974
MlyI GAGTC 2 cut(s) 799, 1238
MmeI TCCRAC 2 cut(s) 225, 1862
MseI TTAA 9 cut(s) 15, 57, 375, 561, 578, 1049, 1068, 1604, 1656
MslI CAYNNNNRTG 1 cut(s) 1977
MspR9I CCNGG 2 cut(s) 281, 1181
MvaI CCWGG 2 cut(s) 281, 1181
MwoI GCNNNNNNNGC 9 cut(s) 10, 164, 731, 935, 1043, 1091, 1299, 1374, 1858
NcoI CCATGG 1 cut(s) 636
NdeII GATC 8 cut(s) 259, 682, 1003, 1129, 1351, 1402, 1450, 1612
NlaIII CATG 4 cut(s) 640, 772, 1472, 1537
NlaIV GGNNCC 3 cut(s) 285, 675, 1833
NmuCI GTSAC 1 cut(s) 194
PaqCI CACCTGC 2 cut(s) 593, 1085
PciSI GCTCTTC 1 cut(s) 834
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PfeI GAWTC 2 cut(s) 521, 1250
PfoI TCCNGGA 1 cut(s) 1179
PkrI GCNGC 3 cut(s) 169, 1876, 1941
PleI GAGTC 2 cut(s) 798, 1237
PpsI GAGTC 2 cut(s) 798, 1237
Ppu21I YACGTR 1 cut(s) 878
Psp6I CCWGG 2 cut(s) 279, 1179
PspFI CCCAGC 1 cut(s) 460
PspGI CCWGG 2 cut(s) 279, 1179
PspN4I GGNNCC 3 cut(s) 285, 675, 1833
PspPI GGNCC 3 cut(s) 283, 674, 1802
PstI CTGCAG 2 cut(s) 736, 760
PsuI RGATCY 3 cut(s) 259, 1351, 1612
RsaI GTAC 3 cut(s) 1583, 1751, 1949
RsaNI GTAC 3 cut(s) 1582, 1750, 1948
RseI CAYNNNNRTG 1 cut(s) 1977
SapI GCTCTTC 1 cut(s) 834
SaqAI TTAA 9 cut(s) 15, 57, 375, 561, 578, 1049, 1068, 1604, 1656
SatI GCNGC 3 cut(s) 168, 1875, 1940
Sau3AI GATC 8 cut(s) 259, 682, 1003, 1129, 1351, 1402, 1450, 1612
Sau96I GGNCC 3 cut(s) 283, 674, 1802
SchI GAGTC 2 cut(s) 799, 1238
ScrFI CCNGG 2 cut(s) 281, 1181
SduI GDGCHC 3 cut(s) 102, 1836, 1974
SfaNI GCATC 2 cut(s) 1166, 1750
SfcI CTRYAG 2 cut(s) 732, 756
SmiMI CAYNNNNRTG 1 cut(s) 1977
SmlI CTYRAG 8 cut(s) 116, 178, 787, 957, 1297, 1577, 1616, 1816
SmoI CTYRAG 8 cut(s) 116, 178, 787, 957, 1297, 1577, 1616, 1816
SsiI CCGC 2 cut(s) 825, 1037
SspI AATATT 1 cut(s) 1090
SspMI CTAG 3 cut(s) 570, 1556, 1943
StyD4I CCNGG 2 cut(s) 279, 1179
StyI CCWWGG 3 cut(s) 636, 1053, 1836
TaaI ACNGT 3 cut(s) 427, 589, 950
TaiI ACGT 2 cut(s) 880, 1924
TaqI TCGA 3 cut(s) 380, 835, 1719
TfiI GAWTC 2 cut(s) 521, 1250
Tru1I TTAA 9 cut(s) 15, 57, 375, 561, 578, 1049, 1068, 1604, 1656
Tru9I TTAA 9 cut(s) 15, 57, 375, 561, 578, 1049, 1068, 1604, 1656
TscAI CASTG 2 cut(s) 1571, 1717
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 3 cut(s) 167, 1874, 1939
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 5 cut(s) 821, 1127, 1160, 1290, 1541
TspRI CASTG 2 cut(s) 1571, 1717
XapI RAATTY 4 cut(s) 33, 1309, 1316, 1959
XspI CTAG 3 cut(s) 570, 1556, 1943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.