RchiOBHm_Chr2g0084391

RAP

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
190228 .. 193334
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45998

Sequence Viewer

Length: 1911 bp
ATGCAAGGATTACTTAATGCCTTCTCTTATCAAATTCGTTTGAAACCCGAAATTGCTCACAAGCTTACCGTGACAAAAACTGGGCTCCTCTCCCAAAAACTCGACCTGGTTTTTCCAAGAAGAAATTGCTTCAATGCCATTAGCTCAACAAGTGTTGACGCTGATGGAGACGAAGAAGAAAGATGTAATTTGGATTGGGAATTGGAGTTTCTTGGAGAGCTTGACAAGAAGACGAAAAACCAACCTACATCTAGGCTGCTTCAAGAAACTGAGGGCATGGATTGGTGTGTGAGGGCAAGAAAGACTGCTCTAAAGTCGATTGAAGCCAAGGGCTGGTCTCATAGAATGGAAGATATGATTACCAAAAAGAAGAAAAAGAAAAAGAACAAGAAGAAACTGGTGACGAAAAACAAAATGAATAAGAAAAGCAAGCAAGTCGAACAAGACCTTGATTCAGAGGAAGACTTTGATATGCAAGATATAGATGCATTAGGTGGTTCTACCGATTTAAGAACAACTGTGAGTATGCTGGGAGGTGGGATGTTTGAAGAGAAAAGGGAGAAGACCATGCAAGATTTTGTTCAGAGGCTTTCCCAATTCTCAGGGCCATCTGATCGTAAGAAAGAAATCAACTTGAACAAAGCAATTGTTGAAGCACAAACTGCAGAAGAAGTATTGGAGGTTACTGCTGAGACAATAATGGCTGTGGGGAAAGGCTTGAGTCCCTCTCCCCTCTCTCCTTTGAACATTGCCACTGCTCTTCATCGAATTGCTAAGAACATGGAGAAAGTTTCGATGCTAGAGACACGTAGGTTGGCTTTTGCTCGTCAAAGAGAGATGTCTATGCTTGTAGGAATAGCAATGACAGCCTTACCAGAGTGTTCAGCTCAAGGTATTTCTAATATCTCGTGGGCATTGTCTAAGATAGGAGGTGAGCTGCTTTACTTGTCAGAAATGGATAGAGTTGCAGAGGTAGCCTTAACCAAGGTTGGGGAGTTTAATTCACAGAATGTGGCTAATATCGCGGGGGCTTTTGCTTCCATGAAGCACTCTGCTTCTGATCTTTTTCCTGAGTTATCAAAGAGGGCATCAGTTATAATTCACACTTTCCAAGAGCAAGAGCTTGCTCAGGTTTTGTGGGCTTTTGCTTCTTTACATGAGTCTGCTGAACCTTTGCTGGAATCTTTAGATAATGTTTTCAAAGATGCAAACCAATTTATATGCTGCCCAAACAAAGAACAATCGAATCTCAACCGAGAAAATGGTGTGGACAACATAGGAGATCTTGACATCAATGGCATTGCACGCACTCCTGTGCTCAGTTTCAGAAGGGATCAGCTTGGGAACATAGCGTGGTCTTATGCTGTTCTAGGACAAATGGACCGCAGTTTTTTTTCCCATGTGTGGAGGACTCTTTGCCAATTTGAAGAGCAAAAAATTTCAGAACAGTATAGGGAGGATGTCATGTTTGCTTCTCAAGTTCATCTAGTGAACCAGTGCTTGAAGCTTGAGTACCCACATCTTCATTTATCTTTAAAGAGAGATCTTGAGGAGAAAATAGCACGTGCCGGTAAAACTAAGAGATTTAACCAGAAAATGACTTCATCTTTTCAAAAGGAGGTCGCTCATCTTCTTGTTAGCACTGGCCTTGATTGGATCAAAGAGTATGATGTGGACGGGTACACTGTGGATGCTGTTGTAATTGATAAGAAGATTGCTATGGAGATTGATGGCCCAACTCATTTCTCAAGAAATACTGGGGTTCCCTTGGGACACACTATACTCAAACGCCGCTACATAACTGTAGCTGGTTGGAAAGTTGTGTCTTTGTCTCATCAAGAGTGGGAAGAACTTGAAGGTGGGTTTGAGCAGCTAGACTACCTAAGAGAAATTTTGAAGGAGCACCTTTAG

Protein Analysis

636

Amino Acids

72.13

Weight (kDa)

6.36

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTES_1575 PF18741 537 - 616 2.5e-07 REase_MTES_1575
RAP PF08373 575 - 630 1.9e-15 RAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1097
AccB7I CCANNNNNTGG 1 cut(s) 333
AccII CGCG 1 cut(s) 1025
AciI CCGC 3 cut(s) 1025, 1384, 1792
AclWI GGATC 2 cut(s) 1341, 1664
AcsI RAATTY 3 cut(s) 33, 1437, 1890
AcvI CACGTG 1 cut(s) 1565
AfaI GTAC 2 cut(s) 1514, 1682
AfiI CCNNNNNNNGG 3 cut(s) 333, 990, 1404
AflIII ACRYGT 1 cut(s) 806
AjnI CCWGG 1 cut(s) 105
AleI CACNNNNGTG 1 cut(s) 1313
Alw21I GWGCWC 2 cut(s) 1320, 1905
Alw26I GTCTC 5 cut(s) 162, 342, 686, 797, 1836
AlwI GGATC 2 cut(s) 1341, 1664
AoxI GGCC 3 cut(s) 605, 1645, 1732
ApeKI GCWGC 4 cut(s) 256, 937, 1224, 1870
ApoI RAATTY 3 cut(s) 33, 1437, 1890
AspS9I GGNCC 3 cut(s) 605, 1381, 1733
AsuHPI GGTGA 2 cut(s) 412, 944
AvaII GGWCC 1 cut(s) 1381
BanII GRGCYC 1 cut(s) 87
BarI GAAGNNNNNNTAC 2 cut(s) 1496, 1528
BauI CACGAG 1 cut(s) 907
BbrPI CACGTG 1 cut(s) 1565
BbsI GAAGAC 3 cut(s) 236, 468, 569
Bbv12I GWGCWC 2 cut(s) 1320, 1905
BbvI GCAGC 4 cut(s) 243, 924, 1211, 1882
BccI CCATC 3 cut(s) 158, 616, 1724
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 1 cut(s) 107
BcoDI GTCTC 5 cut(s) 162, 342, 686, 797, 1836
BfaI CTAG 5 cut(s) 252, 800, 1370, 1487, 1874
BfmI CTRYAG 2 cut(s) 663, 1803
BglII AGATCT 2 cut(s) 1282, 1543
BisI GCNGC 5 cut(s) 257, 938, 1225, 1792, 1871
BlsI GCNGC 5 cut(s) 258, 939, 1226, 1793, 1872
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 1381
BmgT120I GGNCC 3 cut(s) 605, 1381, 1733
BmiI GGNNCC 2 cut(s) 86, 1764
BmrFI CCNGG 1 cut(s) 107
BmrI ACTGGG 2 cut(s) 90, 1767
BmsI GCATC 5 cut(s) 475, 786, 1097, 1195, 1681
BmuI ACTGGG 2 cut(s) 90, 1767
BpiI GAAGAC 3 cut(s) 236, 468, 569
BplI GAGNNNNNCTC 2 cut(s) 712, 744
Bpu10I CCTNAGC 1 cut(s) 1128
BpuEI CTTGAG 6 cut(s) 739, 873, 1461, 1529, 1568, 1732
BsaAI YACGTR 2 cut(s) 809, 1565
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 3 cut(s) 327, 984, 1767
Bsc4I CCNNNNNNNGG 3 cut(s) 333, 990, 1404
Bse118I RCCGGY 1 cut(s) 1568
Bse1I ACTGG 5 cut(s) 85, 402, 1495, 1648, 1762
Bse3DI GCAATG 3 cut(s) 747, 867, 1299
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 3 cut(s) 327, 984, 1767
BseGI GGATG 3 cut(s) 546, 1465, 1696
BseLI CCNNNNNNNGG 3 cut(s) 333, 990, 1404
BseMI GCAATG 3 cut(s) 747, 867, 1299
BseMII CTCAG 6 cut(s) 261, 615, 681, 1062, 1142, 1333
BseNI ACTGG 5 cut(s) 85, 402, 1495, 1648, 1762
BseRI GAGGAG 2 cut(s) 77, 1565
BseXI GCAGC 4 cut(s) 243, 924, 1211, 1882
BseYI CCCAGC 1 cut(s) 529
Bsh1236I CGCG 1 cut(s) 1025
BshFI GGCC 3 cut(s) 607, 1647, 1734
BsiHKAI GWGCWC 2 cut(s) 1320, 1905
BsiSI CCGG 1 cut(s) 1569
BslFI GGGAC 2 cut(s) 708, 1785
BslI CCNNNNNNNGG 3 cut(s) 333, 990, 1404
BsmAI GTCTC 5 cut(s) 162, 342, 686, 797, 1836
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 2 cut(s) 708, 1785
BsnI GGCC 3 cut(s) 607, 1647, 1734
Bso31I GGTCTC 1 cut(s) 342
Bsp1286I GDGCHC 3 cut(s) 87, 1320, 1905
Bsp143I GATC 6 cut(s) 613, 1060, 1282, 1333, 1543, 1656
BspACI CCGC 3 cut(s) 1025, 1384, 1792
BspANI GGCC 3 cut(s) 607, 1647, 1734
BspCNI CTCAG 6 cut(s) 262, 614, 682, 1063, 1141, 1332
BspFNI CGCG 1 cut(s) 1025
BspLI GGNNCC 2 cut(s) 86, 1764
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 2 cut(s) 1341, 1664
BspQI GCTCTTC 2 cut(s) 765, 1422
BspTNI GGTCTC 1 cut(s) 342
BsrDI GCAATG 3 cut(s) 747, 867, 1299
BsrFI RCCGGY 1 cut(s) 1568
BsrI ACTGG 5 cut(s) 85, 402, 1495, 1648, 1762
BssAI RCCGGY 1 cut(s) 1568
BssECI CCNNGG 3 cut(s) 327, 984, 1767
BssMI GATC 6 cut(s) 613, 1060, 1282, 1333, 1543, 1656
BssSI CACGAG 1 cut(s) 907
BssT1I CCWWGG 3 cut(s) 327, 984, 1767
Bst2BI CACGAG 1 cut(s) 907
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 5 cut(s) 70, 520, 1449, 1687, 1804
Bst6I CTCTTC 3 cut(s) 543, 765, 1422
BstAPI GCANNNNNTGC 1 cut(s) 662
BstBAI YACGTR 2 cut(s) 809, 1565
BstC8I GCNNGC 3 cut(s) 431, 1125, 1306
BstF5I GGATG 3 cut(s) 546, 1465, 1696
BstFNI CGCG 1 cut(s) 1025
BstKTI GATC 6 cut(s) 616, 1063, 1285, 1336, 1546, 1659
BstMAI GTCTC 5 cut(s) 162, 342, 686, 797, 1836
BstMBI GATC 6 cut(s) 613, 1060, 1282, 1333, 1543, 1656
BstMWI GCNNNNNNNGC 5 cut(s) 662, 866, 974, 1022, 1305
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 2 cut(s) 663, 1803
BstUI CGCG 1 cut(s) 1025
BstV1I GCAGC 4 cut(s) 243, 924, 1211, 1882
BstV2I GAAGAC 3 cut(s) 236, 468, 569
BstX2I RGATCY 2 cut(s) 1282, 1543
BstYI RGATCY 2 cut(s) 1282, 1543
BsuRI GGCC 3 cut(s) 607, 1647, 1734
BtsCI GGATG 3 cut(s) 546, 1465, 1696
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 4 cut(s) 753, 1502, 1641, 1683
Cac8I GCNNGC 3 cut(s) 431, 1125, 1306
Cfr10I RCCGGY 1 cut(s) 1568
Cfr13I GGNCC 3 cut(s) 605, 1381, 1733
CseI GACGC 1 cut(s) 167
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 2 cut(s) 1513, 1681
CviAII CATG 7 cut(s) 277, 568, 781, 1042, 1157, 1400, 1465
CviQI GTAC 2 cut(s) 1513, 1681
DpnI GATC 6 cut(s) 615, 1062, 1284, 1335, 1545, 1658
DpnII GATC 6 cut(s) 613, 1060, 1282, 1333, 1543, 1656
DraI TTTAAA 1 cut(s) 1536
Eam1104I CTCTTC 3 cut(s) 543, 765, 1422
EarI CTCTTC 3 cut(s) 543, 765, 1422
Eco130I CCWWGG 3 cut(s) 327, 984, 1767
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 1381
Eco72I CACGTG 1 cut(s) 1565
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 3 cut(s) 327, 984, 1767
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 3 cut(s) 327, 984, 1767
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 7 cut(s) 280, 571, 784, 1045, 1160, 1403, 1468
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 2 cut(s) 708, 1785
FatI CATG 7 cut(s) 276, 567, 780, 1041, 1156, 1399, 1464
FauI CCCGC 1 cut(s) 1018
Fnu4HI GCNGC 5 cut(s) 257, 938, 1225, 1792, 1871
FokI GGATG 3 cut(s) 553, 1472, 1703
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 5 cut(s) 257, 938, 1225, 1792, 1871
FspBI CTAG 5 cut(s) 252, 800, 1370, 1487, 1874
GluI GCNGC 5 cut(s) 257, 938, 1225, 1792, 1871
GsaI CCCAGC 1 cut(s) 533
HaeIII GGCC 3 cut(s) 607, 1647, 1734
HapII CCGG 1 cut(s) 1569
HgaI GACGC 1 cut(s) 167
Hin1II CATG 7 cut(s) 280, 571, 784, 1045, 1160, 1403, 1468
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 2 cut(s) 62, 1505
HinfI GANTC 6 cut(s) 452, 721, 1160, 1181, 1246, 1411
HpaII CCGG 1 cut(s) 1569
HphI GGTGA 2 cut(s) 412, 944
Hpy166II GTNNAC 5 cut(s) 157, 1270, 1492, 1675, 1683
Hpy188I TCNGA 7 cut(s) 457, 585, 613, 952, 1060, 1328, 1444
Hpy188III TCNNGA 6 cut(s) 263, 1070, 1286, 1547, 1749, 1838
Hpy8I GTNNAC 5 cut(s) 157, 1270, 1492, 1675, 1683
HpyAV CCTTC 4 cut(s) 31, 1323, 1850, 1891
HpyCH4III ACNGT 5 cut(s) 70, 520, 1449, 1687, 1804
HpyCH4IV ACGT 2 cut(s) 808, 1564
HpyCH4V TGCA 8 cut(s) 4, 475, 488, 571, 665, 968, 1208, 1304
HpyF10VI GCNNNNNNNGC 5 cut(s) 662, 866, 974, 1022, 1305
HpySE526I ACGT 2 cut(s) 808, 1564
Hsp92II CATG 7 cut(s) 280, 571, 784, 1045, 1160, 1403, 1468
Kzo9I GATC 6 cut(s) 613, 1060, 1282, 1333, 1543, 1656
LguI GCTCTTC 2 cut(s) 765, 1422
LmnI GCTCC 2 cut(s) 90, 1900
Lsp1109I GCAGC 4 cut(s) 243, 924, 1211, 1882
LweI GCATC 5 cut(s) 475, 786, 1097, 1195, 1681
MabI ACCWGGT 1 cut(s) 105
MaeI CTAG 5 cut(s) 252, 800, 1370, 1487, 1874
MaeII ACGT 2 cut(s) 808, 1564
MaeIII GTNAC 3 cut(s) 70, 400, 682
MalI GATC 6 cut(s) 615, 1062, 1284, 1335, 1545, 1658
MboI GATC 6 cut(s) 613, 1060, 1282, 1333, 1543, 1656
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 2 cut(s) 1282, 1543
MhlI GDGCHC 3 cut(s) 87, 1320, 1905
MlyI GAGTC 3 cut(s) 730, 1169, 1405
MmeI TCCRAC 1 cut(s) 1793
Mph1103I ATGCAT 1 cut(s) 490
MseI TTAA 6 cut(s) 15, 509, 980, 999, 1535, 1587
MslI CAYNNNNRTG 1 cut(s) 1313
MspI CCGG 1 cut(s) 1569
MspR9I CCNGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 1025
MwoI GCNNNNNNNGC 5 cut(s) 662, 866, 974, 1022, 1305
NdeII GATC 6 cut(s) 613, 1060, 1282, 1333, 1543, 1656
NlaIII CATG 7 cut(s) 280, 571, 784, 1045, 1160, 1403, 1468
NlaIV GGNNCC 2 cut(s) 86, 1764
NmuCI GTSAC 2 cut(s) 70, 400
NsiI ATGCAT 1 cut(s) 490
OliI CACNNNNGTG 1 cut(s) 1313
PciSI GCTCTTC 2 cut(s) 765, 1422
PfeI GAWTC 3 cut(s) 452, 1181, 1246
PflMI CCANNNNNTGG 1 cut(s) 333
PkrI GCNGC 5 cut(s) 258, 939, 1226, 1793, 1872
PleI GAGTC 3 cut(s) 729, 1168, 1405
PmaCI CACGTG 1 cut(s) 1565
PmlI CACGTG 1 cut(s) 1565
PpsI GAGTC 3 cut(s) 729, 1168, 1405
Ppu21I YACGTR 2 cut(s) 809, 1565
PsiI TTATAA 1 cut(s) 1097
Psp6I CCWGG 1 cut(s) 105
PspCI CACGTG 1 cut(s) 1565
PspFI CCCAGC 1 cut(s) 529
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 86, 1764
PspPI GGNCC 3 cut(s) 605, 1381, 1733
PstI CTGCAG 1 cut(s) 667
PsuI RGATCY 2 cut(s) 1282, 1543
RsaI GTAC 2 cut(s) 1514, 1682
RsaNI GTAC 2 cut(s) 1513, 1681
RseI CAYNNNNRTG 1 cut(s) 1313
SapI GCTCTTC 2 cut(s) 765, 1422
SaqAI TTAA 6 cut(s) 15, 509, 980, 999, 1535, 1587
SatI GCNGC 5 cut(s) 257, 938, 1225, 1792, 1871
Sau3AI GATC 6 cut(s) 613, 1060, 1282, 1333, 1543, 1656
Sau96I GGNCC 3 cut(s) 605, 1381, 1733
SchI GAGTC 3 cut(s) 730, 1169, 1405
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 3 cut(s) 87, 1320, 1905
SexAI ACCWGGT 1 cut(s) 105
SfaNI GCATC 5 cut(s) 475, 786, 1097, 1195, 1681
SfcI CTRYAG 2 cut(s) 663, 1803
SinI GGWCC 1 cut(s) 1381
SmiMI CAYNNNNRTG 1 cut(s) 1313
SmlI CTYRAG 6 cut(s) 718, 888, 1476, 1508, 1547, 1747
SmoI CTYRAG 6 cut(s) 718, 888, 1476, 1508, 1547, 1747
SsiI CCGC 3 cut(s) 1025, 1384, 1792
SspMI CTAG 5 cut(s) 252, 800, 1370, 1487, 1874
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 3 cut(s) 327, 984, 1767
TaaI ACNGT 5 cut(s) 70, 520, 1449, 1687, 1804
TaiI ACGT 2 cut(s) 811, 1567
TaqI TCGA 6 cut(s) 102, 317, 438, 766, 794, 1244
TauI GCSGC 1 cut(s) 1794
TfiI GAWTC 3 cut(s) 452, 1181, 1246
Tru1I TTAA 6 cut(s) 15, 509, 980, 999, 1535, 1587
Tru9I TTAA 6 cut(s) 15, 509, 980, 999, 1535, 1587
TscAI CASTG 4 cut(s) 760, 1502, 1648, 1690
TseFI GTSAC 2 cut(s) 70, 400
TseI GCWGC 4 cut(s) 256, 937, 1224, 1870
Tsp45I GTSAC 2 cut(s) 70, 400
TspDTI ATGAA 6 cut(s) 431, 752, 1058, 1472, 1514, 1593
TspRI CASTG 4 cut(s) 760, 1502, 1648, 1690
Van91I CCANNNNNTGG 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 1381
XapI RAATTY 3 cut(s) 33, 1437, 1890
XspI CTAG 5 cut(s) 252, 800, 1370, 1487, 1874
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.