Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010372

Physical Location & Seq

Genomic Coordinates Forward (+)

54803478 .. 54804089

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0453300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCAAACTGAGAAAAAATATGAAGCGGTGGCTTTTCATATTCATAGCAGAACATGGCACAAGGTCAAAATTAGTCCAGAGAATCCTTATTATTATCCTTTCTACGGGAGGGCTGTGGTTGTAGCTGACACTATCTATGCCTTGGCACATAGTCTGAATTTGGTTATAGTATTCTCTTTCTGGTGGGATTCAGATGAGGATGGTGATATTGCCAAGCGTCGACATTTTTTGGGCACTCCATTGTCTTTGGTATTAAAGGACAAGTATCATCCTCCGTGCCTGTTAATAGGGTGTAGGACTCAGAGGTTGGTTCATTTAGGGAGACGGTACTTCTGTGTTGTACAGACCGGTCTAAACAATGATTCCCTTGAGTATCAGTACCTTTGTGCGACGACTTTTAGAATTGTCGGTCAAGGGCAAGAAATGAACATCGAGACTGTTCAGTCATCCATTTTCCGCATAACGATTGAAGGGTATAGCGCAAATAATGCACTGCCTGAAAGTAAAAGTGCTGCATGGACTTCGAAGGTGGAAGAAGACTTCTTTTCCTTTCCAACTGGTCCTAAACTAGGATTGGAGGCATTCAGAACCAAAAAAGAAGATGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RAP

Protein Analysis

203

Amino Acids

23.4

Weight (kDa)

7.7

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31890
fragaria_vesca	FvH4_1g00100
malus_domestica	MD11G1156300.v1.1
prunus_persica	Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1
pyrus_communis	pycom11g12690
rosa_chinensis	RchiOBHm_Chr2g0084391
rosa_laevigata	RLG00000015613
rosa_multiflora	Rmu_sc0009404.1_g000009
rosa_roxburghii	Rroxscaffold_2G00156140
rosa_rugosa	Rorug01G0453000 Rorug01G0453100 Rorug01G0453200 Rorug01G0453300
rosa_samantha	Rh2AG001400 Rh2BG001300 Rh2CG001300 Rh2DG001500
rosa_wichuraiana	Rw2G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	220
AciI	CCGC	2 cut(s)	26, 457
AcsI	RAATTY	1 cut(s)	157
AfaI	GTAC	3 cut(s)	329, 342, 380
AfiI	CCNNNNNNNGG	2 cut(s)	104, 569
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	470
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	2 cut(s)	316, 428
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	1 cut(s)	157
AsiGI	ACCGGT	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	1 cut(s)	215
AsuII	TTCGAA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	236
BaeI	ACNNNNGTAYC	2 cut(s)	319, 352
BbsI	GAAGAC	1 cut(s)	543
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	194
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BcoDI	GTCTC	2 cut(s)	316, 428
BfaI	CTAG	1 cut(s)	569
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BpiI	GAAGAC	1 cut(s)	543
Bpu14I	TTCGAA	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 569
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	562
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	3 cut(s)	205, 268, 446
BseLI	CCNNNNNNNGG	2 cut(s)	104, 569
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	562
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	499
BshTI	ACCGGT	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	104, 569
BsmAI	GTCTC	2 cut(s)	316, 428
BsmBI	CGTCTC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	581
Bsp119I	TTCGAA	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	340
BspACI	CCGC	2 cut(s)	26, 457
BspCNI	CTCAG	1 cut(s)	313
BspT104I	TTCGAA	1 cut(s)	524
BsrFI	RCCGGY	1 cut(s)	347
BsrGI	TGTACA	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	327, 439
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstAUI	TGTACA	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	524
BstDEI	CTNAG	2 cut(s)	9, 300
BstENI	CCTNNNNNAGG	1 cut(s)	567
BstF5I	GGATG	3 cut(s)	205, 268, 446
BstHHI	GCGC	1 cut(s)	482
BstMAI	GTCTC	2 cut(s)	316, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstSLI	GKGCMC	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	1 cut(s)	543
BtsCI	GGATG	3 cut(s)	205, 268, 446
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	1 cut(s)	491
CfoI	GCGC	1 cut(s)	482
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	560
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	3 cut(s)	328, 341, 379
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	2 cut(s)	54, 516
CviJI	RGCY	3 cut(s)	32, 113, 125
CviKI_1	RGCY	3 cut(s)	32, 113, 125
CviQI	GTAC	3 cut(s)	328, 341, 379
DdeI	CTNAG	2 cut(s)	9, 300
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	560
EcoNI	CCTNNNNNAGG	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	2 cut(s)	57, 519
FatI	CATG	2 cut(s)	53, 515
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	3 cut(s)	212, 255, 433
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	1 cut(s)	569
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	1 cut(s)	513
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	482
Hin1II	CATG	2 cut(s)	57, 519
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HinfI	GANTC	4 cut(s)	82, 188, 298, 362
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	4 cut(s)	156, 193, 303, 587
Hpy188III	TCNNGA	2 cut(s)	77, 433
Hpy8I	GTNNAC	1 cut(s)	221
Hpy99I	CGWCG	2 cut(s)	222, 394
HpyAV	CCTTC	2 cut(s)	464, 520
HpyCH4III	ACNGT	2 cut(s)	327, 439
HpyCH4V	TGCA	3 cut(s)	4, 491, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	2 cut(s)	9, 300
Hsp92II	CATG	2 cut(s)	57, 519
HspAI	GCGC	1 cut(s)	480
LpnPI	CCDG	6 cut(s)	90, 166, 293, 361, 510, 543
Lsp1109I	GCAGC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	569
MboII	GAAGA	3 cut(s)	545, 548, 611
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	3 cut(s)	69, 157, 402
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	578
MnlI	CCTC	5 cut(s)	102, 190, 282, 297, 571
MseI	TTAA	2 cut(s)	254, 284
MspI	CCGG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	581
MwoI	GCNNNNNNNGC	1 cut(s)	488
NlaIII	CATG	2 cut(s)	57, 519
NspV	TTCGAA	1 cut(s)	524
PctI	GAATGC	1 cut(s)	581
PfeI	GAWTC	3 cut(s)	82, 188, 362
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	514
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	560
RsaI	GTAC	3 cut(s)	329, 342, 380
RsaNI	GTAC	3 cut(s)	328, 341, 379
SalI	GTCGAC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	254, 284
SatI	GCNGC	1 cut(s)	513
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	5 cut(s)	66, 127, 308, 384, 531
SfuI	TTCGAA	1 cut(s)	524
SinI	GGWCC	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	69, 157, 402
SsiI	CCGC	2 cut(s)	26, 457
SspMI	CTAG	1 cut(s)	569
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	327, 439
TaqI	TCGA	3 cut(s)	220, 432, 524
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	3 cut(s)	69, 157, 402
TatI	WGTACW	1 cut(s)	340
TfiI	GAWTC	3 cut(s)	82, 188, 362
Tru1I	TTAA	2 cut(s)	254, 284
Tru9I	TTAA	2 cut(s)	254, 284
TscAI	CASTG	1 cut(s)	498
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	5 cut(s)	26, 32, 36, 302, 440
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	560
XagI	CCTNNNNNAGG	1 cut(s)	567
XapI	RAATTY	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.