Rroxscaffold_2G00156140

RAP

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
92585105 .. 92587612
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00156140.1

Sequence Viewer

Length: 1869 bp
ATGCAAGGATTACTTAATGCCTTCTCTTATCAAATTCGTTTGAAACCCGAAATTGCTCACAAGCTTCCCGTGACAAAAACTGGGCTCCTCTCCCAAAAACTTGACCTGGTTTTTCCAAGAAGAAATTGCTTCAATGCCATTAGCTCAACAAGTGTTGATGGTGATGGAGAAGAAGAAGAAAGAGGTAATTTGGATTGGGAATTGGAGTTTCTTGGAGAGCTTGACAAGAAGACGAAAAACCAACCTACATCTAGGCTGCTTCAAGAAACTGAGGGCATGGATTGGTGTGTGAGGGCAAGAAAGACTGCTCTAAAGTCGATTGAAGCCAAGGGCTGGTCTCATAGAATGGAAGATATGATTACCAAAAAGAAGAAAAAGAAAAAGAACAAGAAGAAACTGGTGTCGAAAAACAAAATGAATAAGAAAAGCAAGCAAGTCGAAGAAGACTTTGATTCAGAGGAAGACTTTGATATGCAAGATATAGATGCATTAGGTGGTTCTACCGATTTAAGAAGAACCGTGAGTATGGTGGGAGGTGGGATGTTTGAAGAGAAAAAGGAGAAGACCATGCAAGATTTTGTTCAGAGGCTTTCCCAATTCTCAGGGCCATCTGATCGTAAGAAAGAAATCAACTTGAACAAAGCAATTGTTGAAGCACAAACTGCAGAAGAAGTATTGGAGGTTACTGCTGAGACAATCATGGCTGTGGGAAAAGGCTTGAGTCCCTCTCCCCTTTCTCCTTTGAACATTGCCACTGCTCTTCATCGAATTGCTAAGAACATGGAGAAAGTTTCAATGCTAGAGACACGGAGGTTGGCTTTTGCCCGTCAAAGAGAGATGTCTATGCTTGTAGGAATAGCAATGACAGCCTTACCAGAGTGTTCAGCTCAAGGTATTTCTAATATCTCGTGGGCATTGTCTAAGATAGGAAGTGAGCTGCTTTACTTGTCAGAAATGGATAGAGTTGCAGAGGTGGCCTTAACCAAGGTTGGGGAGTTTAATTCACAGAATGTGGCTAATATTGCTGGTGCTTTTGCTTCCATGAAGCACTCTGCTTCTGATCTTTTTCCTGAGTTATCAAAGAGGGCATCAGTTATAATTCACACTTTCCAAGAGCAAGAGCTTGCTCAGGTTTTGTGGGCTTTTGCTTCCTTACATGAGTCTGCTGAACCTTTGCTGGAATCTTTAGATAATGTTTTCAAAGATGCAAACCAATTTATATGCTGTCCAAACAAAGACCAATCGAATCTCAACCGAGAAAATGGTGTGGACAACATAGGAGATCTTGACATCAATGGCATTGCACACGCTCCTGTGCTCAGTTTCAGAAGGGATCAGCTTGGGAACATAGCGTGGTCTTATGCTGTTCTAGGACAAATGGACCGCAAGCAAAAAATTTCAGAACAGTATAGGGAGGATATCATGTTTGCTTCTCAAGTTCATCTAGTGAACCAGTGCTTGAAGCTTGAGTACCCACATCTTCATTTATCTTTAAAGAGAGATCTTGAGGAGAAAATAGCACGTGCCGGTAAAACTAAGAGATTTAACCAGAAAATGACTTCATCTTTTCAAAAGGAGGTCGCTCATCTTCTTGTTAGCACTGGCCTTGATTGGATCAAAGAGTATGATGTGGACGGGTACACTGTGGATGCTGTTGTAATTGATAAGAAGATTGCTATGGAGATTGATGGCCCAACTCATTTCTCAAGAAATACCGGGGTTCCCTTGGGACACACTATACTCAAACGCCGCTACATAACTGCAGCTGGTTGGAAAGTTGTGTCTTTGTCTCATCAAGAGTGGGAAGAACTTGAAGGTGGGTTTGAGCAGCTAGACTACCTAAGAGAAATTTTGAAGGAGCACCTTTAG

Protein Analysis

622

Amino Acids

70.3

Weight (kDa)

6.48

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RESC6 PF26188 283 - 386 9e-06 RNA-editing substrate-binding complex 6 protein
MTES_1575 PF18741 523 - 602 1.1e-07 REase_MTES_1575
RAP PF08373 561 - 616 4.8e-16 RAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1097
AccB7I CCANNNNNTGG 1 cut(s) 333
AciI CCGC 2 cut(s) 1384, 1750
AclWI GGATC 2 cut(s) 1341, 1622
AcsI RAATTY 3 cut(s) 33, 1395, 1848
AcvI CACGTG 1 cut(s) 1523
AfaI GTAC 2 cut(s) 1472, 1640
AfiI CCNNNNNNNGG 2 cut(s) 333, 990
AjnI CCWGG 1 cut(s) 105
Alw21I GWGCWC 2 cut(s) 1320, 1863
Alw26I GTCTC 4 cut(s) 342, 686, 797, 1794
AlwI GGATC 2 cut(s) 1341, 1622
AoxI GGCC 4 cut(s) 605, 975, 1603, 1690
ApeKI GCWGC 4 cut(s) 256, 937, 1763, 1828
ApoI RAATTY 3 cut(s) 33, 1395, 1848
AspS9I GGNCC 3 cut(s) 605, 1381, 1691
AsuC2I CCSGG 1 cut(s) 1717
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 1381
BanII GRGCYC 1 cut(s) 87
BarI GAAGNNNNNNTAC 2 cut(s) 1454, 1486
BauI CACGAG 1 cut(s) 907
BbrPI CACGTG 1 cut(s) 1523
BbsI GAAGAC 4 cut(s) 236, 450, 468, 569
Bbv12I GWGCWC 2 cut(s) 1320, 1863
BbvI GCAGC 4 cut(s) 243, 924, 1775, 1840
BccI CCATC 4 cut(s) 152, 158, 616, 1682
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 1 cut(s) 1717
BcoDI GTCTC 4 cut(s) 342, 686, 797, 1794
BfaI CTAG 5 cut(s) 252, 800, 1370, 1445, 1832
BfmI CTRYAG 2 cut(s) 663, 1761
BglII AGATCT 2 cut(s) 1282, 1501
BisI GCNGC 5 cut(s) 257, 938, 1750, 1764, 1829
BlsI GCNGC 5 cut(s) 258, 939, 1751, 1765, 1830
Bme1390I CCNGG 2 cut(s) 107, 1717
Bme18I GGWCC 1 cut(s) 1381
BmgT120I GGNCC 3 cut(s) 605, 1381, 1691
BmiI GGNNCC 2 cut(s) 86, 1722
BmrFI CCNGG 2 cut(s) 107, 1717
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 4 cut(s) 475, 1097, 1195, 1639
BmuI ACTGGG 1 cut(s) 90
BpiI GAAGAC 4 cut(s) 236, 450, 468, 569
BplI GAGNNNNNCTC 2 cut(s) 712, 744
Bpu10I CCTNAGC 1 cut(s) 1128
BpuEI CTTGAG 6 cut(s) 739, 873, 1419, 1487, 1526, 1690
BpuMI CCSGG 1 cut(s) 1717
BsaAI YACGTR 1 cut(s) 1523
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 4 cut(s) 327, 984, 1716, 1725
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 990
Bse118I RCCGGY 1 cut(s) 1526
Bse1I ACTGG 4 cut(s) 85, 402, 1453, 1606
Bse3DI GCAATG 3 cut(s) 747, 867, 1299
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 4 cut(s) 327, 984, 1716, 1725
BseGI GGATG 2 cut(s) 546, 1654
BseLI CCNNNNNNNGG 2 cut(s) 333, 990
BseMI GCAATG 3 cut(s) 747, 867, 1299
BseMII CTCAG 6 cut(s) 261, 615, 681, 1062, 1142, 1333
BseNI ACTGG 4 cut(s) 85, 402, 1453, 1606
BseRI GAGGAG 2 cut(s) 77, 1523
BseXI GCAGC 4 cut(s) 243, 924, 1775, 1840
BshFI GGCC 4 cut(s) 607, 977, 1605, 1692
BsiHKAI GWGCWC 2 cut(s) 1320, 1863
BsiSI CCGG 2 cut(s) 1527, 1716
BslFI GGGAC 2 cut(s) 708, 1743
BslI CCNNNNNNNGG 2 cut(s) 333, 990
BsmAI GTCTC 4 cut(s) 342, 686, 797, 1794
BsmFI GGGAC 2 cut(s) 708, 1743
BsnI GGCC 4 cut(s) 607, 977, 1605, 1692
Bso31I GGTCTC 1 cut(s) 342
Bsp1286I GDGCHC 3 cut(s) 87, 1320, 1863
Bsp143I GATC 6 cut(s) 613, 1060, 1282, 1333, 1501, 1614
BspACI CCGC 2 cut(s) 1384, 1750
BspANI GGCC 4 cut(s) 607, 977, 1605, 1692
BspCNI CTCAG 6 cut(s) 262, 614, 682, 1063, 1141, 1332
BspLI GGNNCC 2 cut(s) 86, 1722
BspMAI CTGCAG 2 cut(s) 667, 1765
BspPI GGATC 2 cut(s) 1341, 1622
BspQI GCTCTTC 1 cut(s) 765
BspTNI GGTCTC 1 cut(s) 342
BsrDI GCAATG 3 cut(s) 747, 867, 1299
BsrFI RCCGGY 1 cut(s) 1526
BsrI ACTGG 4 cut(s) 85, 402, 1453, 1606
BssAI RCCGGY 1 cut(s) 1526
BssECI CCNNGG 4 cut(s) 327, 984, 1716, 1725
BssMI GATC 6 cut(s) 613, 1060, 1282, 1333, 1501, 1614
BssSI CACGAG 1 cut(s) 907
BssT1I CCWWGG 3 cut(s) 327, 984, 1725
Bst2BI CACGAG 1 cut(s) 907
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 3 cut(s) 520, 1407, 1645
Bst6I CTCTTC 2 cut(s) 543, 765
BstAPI GCANNNNNTGC 1 cut(s) 662
BstBAI YACGTR 1 cut(s) 1523
BstC8I GCNNGC 3 cut(s) 431, 1125, 1388
BstF5I GGATG 2 cut(s) 546, 1654
BstKTI GATC 6 cut(s) 616, 1063, 1285, 1336, 1504, 1617
BstMAI GTCTC 4 cut(s) 342, 686, 797, 1794
BstMBI GATC 6 cut(s) 613, 1060, 1282, 1333, 1501, 1614
BstMWI GCNNNNNNNGC 4 cut(s) 662, 866, 974, 1022
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 105, 1715
BstSFI CTRYAG 2 cut(s) 663, 1761
BstV1I GCAGC 4 cut(s) 243, 924, 1775, 1840
BstV2I GAAGAC 4 cut(s) 236, 450, 468, 569
BstX2I RGATCY 2 cut(s) 1282, 1501
BstYI RGATCY 2 cut(s) 1282, 1501
BsuRI GGCC 4 cut(s) 607, 977, 1605, 1692
BtsCI GGATG 2 cut(s) 546, 1654
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 4 cut(s) 753, 1460, 1599, 1641
Cac8I GCNNGC 3 cut(s) 431, 1125, 1388
Cfr10I RCCGGY 1 cut(s) 1526
Cfr13I GGNCC 3 cut(s) 605, 1381, 1691
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 2 cut(s) 1471, 1639
CviAII CATG 7 cut(s) 277, 568, 700, 781, 1042, 1157, 1423
CviQI GTAC 2 cut(s) 1471, 1639
DpnI GATC 6 cut(s) 615, 1062, 1284, 1335, 1503, 1616
DpnII GATC 6 cut(s) 613, 1060, 1282, 1333, 1501, 1614
DraI TTTAAA 1 cut(s) 1494
Eam1104I CTCTTC 2 cut(s) 543, 765
EarI CTCTTC 2 cut(s) 543, 765
Eco130I CCWWGG 3 cut(s) 327, 984, 1725
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 1420
Eco47I GGWCC 1 cut(s) 1381
Eco72I CACGTG 1 cut(s) 1523
EcoRII CCWGG 1 cut(s) 105
EcoRV GATATC 1 cut(s) 1420
EcoT14I CCWWGG 3 cut(s) 327, 984, 1725
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 3 cut(s) 327, 984, 1725
FaeI CATG 7 cut(s) 280, 571, 703, 784, 1045, 1160, 1426
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 2 cut(s) 708, 1743
FatI CATG 7 cut(s) 276, 567, 699, 780, 1041, 1156, 1422
Fnu4HI GCNGC 5 cut(s) 257, 938, 1750, 1764, 1829
FokI GGATG 2 cut(s) 553, 1661
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 5 cut(s) 257, 938, 1750, 1764, 1829
FspBI CTAG 5 cut(s) 252, 800, 1370, 1445, 1832
GluI GCNGC 5 cut(s) 257, 938, 1750, 1764, 1829
HaeIII GGCC 4 cut(s) 607, 977, 1605, 1692
HapII CCGG 2 cut(s) 1527, 1716
Hin1II CATG 7 cut(s) 280, 571, 703, 784, 1045, 1160, 1426
HindIII AAGCTT 2 cut(s) 62, 1463
HinfI GANTC 5 cut(s) 452, 721, 1160, 1181, 1246
HpaII CCGG 2 cut(s) 1527, 1716
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 4 cut(s) 1270, 1450, 1633, 1641
Hpy188I TCNGA 7 cut(s) 457, 585, 613, 952, 1060, 1328, 1402
Hpy188III TCNNGA 6 cut(s) 263, 1070, 1286, 1505, 1707, 1796
Hpy8I GTNNAC 4 cut(s) 1270, 1450, 1633, 1641
HpyAV CCTTC 4 cut(s) 31, 1323, 1808, 1849
HpyCH4III ACNGT 3 cut(s) 520, 1407, 1645
HpyCH4IV ACGT 1 cut(s) 1522
HpyCH4V TGCA 9 cut(s) 4, 475, 488, 571, 665, 968, 1208, 1304, 1763
HpyF10VI GCNNNNNNNGC 4 cut(s) 662, 866, 974, 1022
HpySE526I ACGT 1 cut(s) 1522
Hsp92II CATG 7 cut(s) 280, 571, 703, 784, 1045, 1160, 1426
Kzo9I GATC 6 cut(s) 613, 1060, 1282, 1333, 1501, 1614
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 3 cut(s) 90, 1315, 1858
Lsp1109I GCAGC 4 cut(s) 243, 924, 1775, 1840
LweI GCATC 4 cut(s) 475, 1097, 1195, 1639
MabI ACCWGGT 1 cut(s) 105
MaeI CTAG 5 cut(s) 252, 800, 1370, 1445, 1832
MaeII ACGT 1 cut(s) 1522
MaeIII GTNAC 2 cut(s) 70, 682
MalI GATC 6 cut(s) 615, 1062, 1284, 1335, 1503, 1616
MboI GATC 6 cut(s) 613, 1060, 1282, 1333, 1501, 1614
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 2 cut(s) 1282, 1501
MhlI GDGCHC 3 cut(s) 87, 1320, 1863
MlyI GAGTC 2 cut(s) 730, 1169
MmeI TCCRAC 1 cut(s) 1751
Mph1103I ATGCAT 1 cut(s) 490
MseI TTAA 6 cut(s) 15, 509, 980, 999, 1493, 1545
MslI CAYNNNNRTG 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 1766
MspI CCGG 2 cut(s) 1527, 1716
MspR9I CCNGG 2 cut(s) 107, 1717
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 4 cut(s) 662, 866, 974, 1022
NciI CCSGG 1 cut(s) 1717
NdeII GATC 6 cut(s) 613, 1060, 1282, 1333, 1501, 1614
NlaIII CATG 7 cut(s) 280, 571, 703, 784, 1045, 1160, 1426
NlaIV GGNNCC 2 cut(s) 86, 1722
NmuCI GTSAC 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 490
PciSI GCTCTTC 1 cut(s) 765
PfeI GAWTC 3 cut(s) 452, 1181, 1246
PflMI CCANNNNNTGG 1 cut(s) 333
PkrI GCNGC 5 cut(s) 258, 939, 1751, 1765, 1830
PleI GAGTC 2 cut(s) 729, 1168
PmaCI CACGTG 1 cut(s) 1523
PmlI CACGTG 1 cut(s) 1523
PpsI GAGTC 2 cut(s) 729, 1168
Ppu21I YACGTR 1 cut(s) 1523
PsiI TTATAA 1 cut(s) 1097
Psp6I CCWGG 1 cut(s) 105
PspCI CACGTG 1 cut(s) 1523
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 86, 1722
PspPI GGNCC 3 cut(s) 605, 1381, 1691
PstI CTGCAG 2 cut(s) 667, 1765
PsuI RGATCY 2 cut(s) 1282, 1501
PvuII CAGCTG 1 cut(s) 1766
RsaI GTAC 2 cut(s) 1472, 1640
RsaNI GTAC 2 cut(s) 1471, 1639
RseI CAYNNNNRTG 1 cut(s) 704
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 6 cut(s) 15, 509, 980, 999, 1493, 1545
SatI GCNGC 5 cut(s) 257, 938, 1750, 1764, 1829
Sau3AI GATC 6 cut(s) 613, 1060, 1282, 1333, 1501, 1614
Sau96I GGNCC 3 cut(s) 605, 1381, 1691
SchI GAGTC 2 cut(s) 730, 1169
ScrFI CCNGG 2 cut(s) 107, 1717
SduI GDGCHC 3 cut(s) 87, 1320, 1863
SexAI ACCWGGT 1 cut(s) 105
SfaNI GCATC 4 cut(s) 475, 1097, 1195, 1639
SfcI CTRYAG 2 cut(s) 663, 1761
SinI GGWCC 1 cut(s) 1381
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 6 cut(s) 718, 888, 1434, 1466, 1505, 1705
SmoI CTYRAG 6 cut(s) 718, 888, 1434, 1466, 1505, 1705
SsiI CCGC 2 cut(s) 1384, 1750
SspI AATATT 1 cut(s) 1021
SspMI CTAG 5 cut(s) 252, 800, 1370, 1445, 1832
StyD4I CCNGG 2 cut(s) 105, 1715
StyI CCWWGG 3 cut(s) 327, 984, 1725
TaaI ACNGT 3 cut(s) 520, 1407, 1645
TaiI ACGT 1 cut(s) 1525
TaqI TCGA 5 cut(s) 317, 404, 438, 766, 1244
TauI GCSGC 1 cut(s) 1752
TfiI GAWTC 3 cut(s) 452, 1181, 1246
Tru1I TTAA 6 cut(s) 15, 509, 980, 999, 1493, 1545
Tru9I TTAA 6 cut(s) 15, 509, 980, 999, 1493, 1545
TscAI CASTG 4 cut(s) 760, 1460, 1606, 1648
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 4 cut(s) 256, 937, 1763, 1828
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 6 cut(s) 431, 752, 1058, 1430, 1472, 1551
TspGWI ACGGA 1 cut(s) 823
TspRI CASTG 4 cut(s) 760, 1460, 1606, 1648
Van91I CCANNNNNTGG 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 1381
XapI RAATTY 3 cut(s) 33, 1395, 1848
XspI CTAG 5 cut(s) 252, 800, 1370, 1445, 1832
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.