RAP
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G31890 |
| fragaria_vesca | FvH4_1g00100 |
| malus_domestica | MD11G1156300.v1.1 |
| prunus_persica | Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 |
| pyrus_communis | pycom11g12690 |
| rosa_chinensis | RchiOBHm_Chr2g0084391 |
| rosa_laevigata | RLG00000015613 |
| rosa_multiflora | Rmu_sc0009404.1_g000009 |
| rosa_roxburghii | Rroxscaffold_2G00156140 |
| rosa_rugosa | Rorug01G0453000 Rorug01G0453100 Rorug01G0453200 Rorug01G0453300 |
| rosa_samantha | Rh2AG001400 Rh2BG001300 Rh2CG001300 Rh2DG001500 |
| rosa_wichuraiana | Rw2G000110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1097 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 333 |
| AciI | CCGC | 2 cut(s) | 1384, 1750 |
| AclWI | GGATC | 2 cut(s) | 1341, 1622 |
| AcsI | RAATTY | 3 cut(s) | 33, 1395, 1848 |
| AcvI | CACGTG | 1 cut(s) | 1523 |
| AfaI | GTAC | 2 cut(s) | 1472, 1640 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 333, 990 |
| AjnI | CCWGG | 1 cut(s) | 105 |
| Alw21I | GWGCWC | 2 cut(s) | 1320, 1863 |
| Alw26I | GTCTC | 4 cut(s) | 342, 686, 797, 1794 |
| AlwI | GGATC | 2 cut(s) | 1341, 1622 |
| AoxI | GGCC | 4 cut(s) | 605, 975, 1603, 1690 |
| ApeKI | GCWGC | 4 cut(s) | 256, 937, 1763, 1828 |
| ApoI | RAATTY | 3 cut(s) | 33, 1395, 1848 |
| AspS9I | GGNCC | 3 cut(s) | 605, 1381, 1691 |
| AsuC2I | CCSGG | 1 cut(s) | 1717 |
| AsuHPI | GGTGA | 1 cut(s) | 173 |
| AvaII | GGWCC | 1 cut(s) | 1381 |
| BanII | GRGCYC | 1 cut(s) | 87 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1454, 1486 |
| BauI | CACGAG | 1 cut(s) | 907 |
| BbrPI | CACGTG | 1 cut(s) | 1523 |
| BbsI | GAAGAC | 4 cut(s) | 236, 450, 468, 569 |
| Bbv12I | GWGCWC | 2 cut(s) | 1320, 1863 |
| BbvI | GCAGC | 4 cut(s) | 243, 924, 1775, 1840 |
| BccI | CCATC | 4 cut(s) | 152, 158, 616, 1682 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 418, 452 |
| BciT130I | CCWGG | 1 cut(s) | 107 |
| BcnI | CCSGG | 1 cut(s) | 1717 |
| BcoDI | GTCTC | 4 cut(s) | 342, 686, 797, 1794 |
| BfaI | CTAG | 5 cut(s) | 252, 800, 1370, 1445, 1832 |
| BfmI | CTRYAG | 2 cut(s) | 663, 1761 |
| BglII | AGATCT | 2 cut(s) | 1282, 1501 |
| BisI | GCNGC | 5 cut(s) | 257, 938, 1750, 1764, 1829 |
| BlsI | GCNGC | 5 cut(s) | 258, 939, 1751, 1765, 1830 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 1717 |
| Bme18I | GGWCC | 1 cut(s) | 1381 |
| BmgT120I | GGNCC | 3 cut(s) | 605, 1381, 1691 |
| BmiI | GGNNCC | 2 cut(s) | 86, 1722 |
| BmrFI | CCNGG | 2 cut(s) | 107, 1717 |
| BmrI | ACTGGG | 1 cut(s) | 90 |
| BmsI | GCATC | 4 cut(s) | 475, 1097, 1195, 1639 |
| BmuI | ACTGGG | 1 cut(s) | 90 |
| BpiI | GAAGAC | 4 cut(s) | 236, 450, 468, 569 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 712, 744 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1128 |
| BpuEI | CTTGAG | 6 cut(s) | 739, 873, 1419, 1487, 1526, 1690 |
| BpuMI | CCSGG | 1 cut(s) | 1717 |
| BsaAI | YACGTR | 1 cut(s) | 1523 |
| BsaI | GGTCTC | 1 cut(s) | 342 |
| BsaJI | CCNNGG | 4 cut(s) | 327, 984, 1716, 1725 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 333, 990 |
| Bse118I | RCCGGY | 1 cut(s) | 1526 |
| Bse1I | ACTGG | 4 cut(s) | 85, 402, 1453, 1606 |
| Bse3DI | GCAATG | 3 cut(s) | 747, 867, 1299 |
| BseBI | CCWGG | 1 cut(s) | 107 |
| BseDI | CCNNGG | 4 cut(s) | 327, 984, 1716, 1725 |
| BseGI | GGATG | 2 cut(s) | 546, 1654 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 333, 990 |
| BseMI | GCAATG | 3 cut(s) | 747, 867, 1299 |
| BseMII | CTCAG | 6 cut(s) | 261, 615, 681, 1062, 1142, 1333 |
| BseNI | ACTGG | 4 cut(s) | 85, 402, 1453, 1606 |
| BseRI | GAGGAG | 2 cut(s) | 77, 1523 |
| BseXI | GCAGC | 4 cut(s) | 243, 924, 1775, 1840 |
| BshFI | GGCC | 4 cut(s) | 607, 977, 1605, 1692 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1320, 1863 |
| BsiSI | CCGG | 2 cut(s) | 1527, 1716 |
| BslFI | GGGAC | 2 cut(s) | 708, 1743 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 333, 990 |
| BsmAI | GTCTC | 4 cut(s) | 342, 686, 797, 1794 |
| BsmFI | GGGAC | 2 cut(s) | 708, 1743 |
| BsnI | GGCC | 4 cut(s) | 607, 977, 1605, 1692 |
| Bso31I | GGTCTC | 1 cut(s) | 342 |
| Bsp1286I | GDGCHC | 3 cut(s) | 87, 1320, 1863 |
| Bsp143I | GATC | 6 cut(s) | 613, 1060, 1282, 1333, 1501, 1614 |
| BspACI | CCGC | 2 cut(s) | 1384, 1750 |
| BspANI | GGCC | 4 cut(s) | 607, 977, 1605, 1692 |
| BspCNI | CTCAG | 6 cut(s) | 262, 614, 682, 1063, 1141, 1332 |
| BspLI | GGNNCC | 2 cut(s) | 86, 1722 |
| BspMAI | CTGCAG | 2 cut(s) | 667, 1765 |
| BspPI | GGATC | 2 cut(s) | 1341, 1622 |
| BspQI | GCTCTTC | 1 cut(s) | 765 |
| BspTNI | GGTCTC | 1 cut(s) | 342 |
| BsrDI | GCAATG | 3 cut(s) | 747, 867, 1299 |
| BsrFI | RCCGGY | 1 cut(s) | 1526 |
| BsrI | ACTGG | 4 cut(s) | 85, 402, 1453, 1606 |
| BssAI | RCCGGY | 1 cut(s) | 1526 |
| BssECI | CCNNGG | 4 cut(s) | 327, 984, 1716, 1725 |
| BssMI | GATC | 6 cut(s) | 613, 1060, 1282, 1333, 1501, 1614 |
| BssSI | CACGAG | 1 cut(s) | 907 |
| BssT1I | CCWWGG | 3 cut(s) | 327, 984, 1725 |
| Bst2BI | CACGAG | 1 cut(s) | 907 |
| Bst2UI | CCWGG | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 3 cut(s) | 520, 1407, 1645 |
| Bst6I | CTCTTC | 2 cut(s) | 543, 765 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 662 |
| BstBAI | YACGTR | 1 cut(s) | 1523 |
| BstC8I | GCNNGC | 3 cut(s) | 431, 1125, 1388 |
| BstF5I | GGATG | 2 cut(s) | 546, 1654 |
| BstKTI | GATC | 6 cut(s) | 616, 1063, 1285, 1336, 1504, 1617 |
| BstMAI | GTCTC | 4 cut(s) | 342, 686, 797, 1794 |
| BstMBI | GATC | 6 cut(s) | 613, 1060, 1282, 1333, 1501, 1614 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 662, 866, 974, 1022 |
| BstNI | CCWGG | 1 cut(s) | 107 |
| BstSCI | CCNGG | 2 cut(s) | 105, 1715 |
| BstSFI | CTRYAG | 2 cut(s) | 663, 1761 |
| BstV1I | GCAGC | 4 cut(s) | 243, 924, 1775, 1840 |
| BstV2I | GAAGAC | 4 cut(s) | 236, 450, 468, 569 |
| BstX2I | RGATCY | 2 cut(s) | 1282, 1501 |
| BstYI | RGATCY | 2 cut(s) | 1282, 1501 |
| BsuRI | GGCC | 4 cut(s) | 607, 977, 1605, 1692 |
| BtsCI | GGATG | 2 cut(s) | 546, 1654 |
| BtsI | GCAGTG | 1 cut(s) | 753 |
| BtsIMutI | CAGTG | 4 cut(s) | 753, 1460, 1599, 1641 |
| Cac8I | GCNNGC | 3 cut(s) | 431, 1125, 1388 |
| Cfr10I | RCCGGY | 1 cut(s) | 1526 |
| Cfr13I | GGNCC | 3 cut(s) | 605, 1381, 1691 |
| CsiI | ACCWGGT | 1 cut(s) | 105 |
| Csp6I | GTAC | 2 cut(s) | 1471, 1639 |
| CviAII | CATG | 7 cut(s) | 277, 568, 700, 781, 1042, 1157, 1423 |
| CviQI | GTAC | 2 cut(s) | 1471, 1639 |
| DpnI | GATC | 6 cut(s) | 615, 1062, 1284, 1335, 1503, 1616 |
| DpnII | GATC | 6 cut(s) | 613, 1060, 1282, 1333, 1501, 1614 |
| DraI | TTTAAA | 1 cut(s) | 1494 |
| Eam1104I | CTCTTC | 2 cut(s) | 543, 765 |
| EarI | CTCTTC | 2 cut(s) | 543, 765 |
| Eco130I | CCWWGG | 3 cut(s) | 327, 984, 1725 |
| Eco24I | GRGCYC | 1 cut(s) | 87 |
| Eco31I | GGTCTC | 1 cut(s) | 342 |
| Eco32I | GATATC | 1 cut(s) | 1420 |
| Eco47I | GGWCC | 1 cut(s) | 1381 |
| Eco72I | CACGTG | 1 cut(s) | 1523 |
| EcoRII | CCWGG | 1 cut(s) | 105 |
| EcoRV | GATATC | 1 cut(s) | 1420 |
| EcoT14I | CCWWGG | 3 cut(s) | 327, 984, 1725 |
| EcoT22I | ATGCAT | 1 cut(s) | 490 |
| EcoT38I | GRGCYC | 1 cut(s) | 87 |
| ErhI | CCWWGG | 3 cut(s) | 327, 984, 1725 |
| FaeI | CATG | 7 cut(s) | 280, 571, 703, 784, 1045, 1160, 1426 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 29 |
| FaqI | GGGAC | 2 cut(s) | 708, 1743 |
| FatI | CATG | 7 cut(s) | 276, 567, 699, 780, 1041, 1156, 1422 |
| Fnu4HI | GCNGC | 5 cut(s) | 257, 938, 1750, 1764, 1829 |
| FokI | GGATG | 2 cut(s) | 553, 1661 |
| FriOI | GRGCYC | 1 cut(s) | 87 |
| Fsp4HI | GCNGC | 5 cut(s) | 257, 938, 1750, 1764, 1829 |
| FspBI | CTAG | 5 cut(s) | 252, 800, 1370, 1445, 1832 |
| GluI | GCNGC | 5 cut(s) | 257, 938, 1750, 1764, 1829 |
| HaeIII | GGCC | 4 cut(s) | 607, 977, 1605, 1692 |
| HapII | CCGG | 2 cut(s) | 1527, 1716 |
| Hin1II | CATG | 7 cut(s) | 280, 571, 703, 784, 1045, 1160, 1426 |
| HindIII | AAGCTT | 2 cut(s) | 62, 1463 |
| HinfI | GANTC | 5 cut(s) | 452, 721, 1160, 1181, 1246 |
| HpaII | CCGG | 2 cut(s) | 1527, 1716 |
| HphI | GGTGA | 1 cut(s) | 173 |
| Hpy166II | GTNNAC | 4 cut(s) | 1270, 1450, 1633, 1641 |
| Hpy188I | TCNGA | 7 cut(s) | 457, 585, 613, 952, 1060, 1328, 1402 |
| Hpy188III | TCNNGA | 6 cut(s) | 263, 1070, 1286, 1505, 1707, 1796 |
| Hpy8I | GTNNAC | 4 cut(s) | 1270, 1450, 1633, 1641 |
| HpyAV | CCTTC | 4 cut(s) | 31, 1323, 1808, 1849 |
| HpyCH4III | ACNGT | 3 cut(s) | 520, 1407, 1645 |
| HpyCH4IV | ACGT | 1 cut(s) | 1522 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 475, 488, 571, 665, 968, 1208, 1304, 1763 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 662, 866, 974, 1022 |
| HpySE526I | ACGT | 1 cut(s) | 1522 |
| Hsp92II | CATG | 7 cut(s) | 280, 571, 703, 784, 1045, 1160, 1426 |
| Kzo9I | GATC | 6 cut(s) | 613, 1060, 1282, 1333, 1501, 1614 |
| LguI | GCTCTTC | 1 cut(s) | 765 |
| LmnI | GCTCC | 3 cut(s) | 90, 1315, 1858 |
| Lsp1109I | GCAGC | 4 cut(s) | 243, 924, 1775, 1840 |
| LweI | GCATC | 4 cut(s) | 475, 1097, 1195, 1639 |
| MabI | ACCWGGT | 1 cut(s) | 105 |
| MaeI | CTAG | 5 cut(s) | 252, 800, 1370, 1445, 1832 |
| MaeII | ACGT | 1 cut(s) | 1522 |
| MaeIII | GTNAC | 2 cut(s) | 70, 682 |
| MalI | GATC | 6 cut(s) | 615, 1062, 1284, 1335, 1503, 1616 |
| MboI | GATC | 6 cut(s) | 613, 1060, 1282, 1333, 1501, 1614 |
| MfeI | CAATTG | 1 cut(s) | 645 |
| MflI | RGATCY | 2 cut(s) | 1282, 1501 |
| MhlI | GDGCHC | 3 cut(s) | 87, 1320, 1863 |
| MlyI | GAGTC | 2 cut(s) | 730, 1169 |
| MmeI | TCCRAC | 1 cut(s) | 1751 |
| Mph1103I | ATGCAT | 1 cut(s) | 490 |
| MseI | TTAA | 6 cut(s) | 15, 509, 980, 999, 1493, 1545 |
| MslI | CAYNNNNRTG | 1 cut(s) | 704 |
| MspA1I | CMGCKG | 1 cut(s) | 1766 |
| MspI | CCGG | 2 cut(s) | 1527, 1716 |
| MspR9I | CCNGG | 2 cut(s) | 107, 1717 |
| MunI | CAATTG | 1 cut(s) | 645 |
| MvaI | CCWGG | 1 cut(s) | 107 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 662, 866, 974, 1022 |
| NciI | CCSGG | 1 cut(s) | 1717 |
| NdeII | GATC | 6 cut(s) | 613, 1060, 1282, 1333, 1501, 1614 |
| NlaIII | CATG | 7 cut(s) | 280, 571, 703, 784, 1045, 1160, 1426 |
| NlaIV | GGNNCC | 2 cut(s) | 86, 1722 |
| NmuCI | GTSAC | 1 cut(s) | 70 |
| NsiI | ATGCAT | 1 cut(s) | 490 |
| PciSI | GCTCTTC | 1 cut(s) | 765 |
| PfeI | GAWTC | 3 cut(s) | 452, 1181, 1246 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 333 |
| PkrI | GCNGC | 5 cut(s) | 258, 939, 1751, 1765, 1830 |
| PleI | GAGTC | 2 cut(s) | 729, 1168 |
| PmaCI | CACGTG | 1 cut(s) | 1523 |
| PmlI | CACGTG | 1 cut(s) | 1523 |
| PpsI | GAGTC | 2 cut(s) | 729, 1168 |
| Ppu21I | YACGTR | 1 cut(s) | 1523 |
| PsiI | TTATAA | 1 cut(s) | 1097 |
| Psp6I | CCWGG | 1 cut(s) | 105 |
| PspCI | CACGTG | 1 cut(s) | 1523 |
| PspGI | CCWGG | 1 cut(s) | 105 |
| PspN4I | GGNNCC | 2 cut(s) | 86, 1722 |
| PspPI | GGNCC | 3 cut(s) | 605, 1381, 1691 |
| PstI | CTGCAG | 2 cut(s) | 667, 1765 |
| PsuI | RGATCY | 2 cut(s) | 1282, 1501 |
| PvuII | CAGCTG | 1 cut(s) | 1766 |
| RsaI | GTAC | 2 cut(s) | 1472, 1640 |
| RsaNI | GTAC | 2 cut(s) | 1471, 1639 |
| RseI | CAYNNNNRTG | 1 cut(s) | 704 |
| SapI | GCTCTTC | 1 cut(s) | 765 |
| SaqAI | TTAA | 6 cut(s) | 15, 509, 980, 999, 1493, 1545 |
| SatI | GCNGC | 5 cut(s) | 257, 938, 1750, 1764, 1829 |
| Sau3AI | GATC | 6 cut(s) | 613, 1060, 1282, 1333, 1501, 1614 |
| Sau96I | GGNCC | 3 cut(s) | 605, 1381, 1691 |
| SchI | GAGTC | 2 cut(s) | 730, 1169 |
| ScrFI | CCNGG | 2 cut(s) | 107, 1717 |
| SduI | GDGCHC | 3 cut(s) | 87, 1320, 1863 |
| SexAI | ACCWGGT | 1 cut(s) | 105 |
| SfaNI | GCATC | 4 cut(s) | 475, 1097, 1195, 1639 |
| SfcI | CTRYAG | 2 cut(s) | 663, 1761 |
| SinI | GGWCC | 1 cut(s) | 1381 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 704 |
| SmlI | CTYRAG | 6 cut(s) | 718, 888, 1434, 1466, 1505, 1705 |
| SmoI | CTYRAG | 6 cut(s) | 718, 888, 1434, 1466, 1505, 1705 |
| SsiI | CCGC | 2 cut(s) | 1384, 1750 |
| SspI | AATATT | 1 cut(s) | 1021 |
| SspMI | CTAG | 5 cut(s) | 252, 800, 1370, 1445, 1832 |
| StyD4I | CCNGG | 2 cut(s) | 105, 1715 |
| StyI | CCWWGG | 3 cut(s) | 327, 984, 1725 |
| TaaI | ACNGT | 3 cut(s) | 520, 1407, 1645 |
| TaiI | ACGT | 1 cut(s) | 1525 |
| TaqI | TCGA | 5 cut(s) | 317, 404, 438, 766, 1244 |
| TauI | GCSGC | 1 cut(s) | 1752 |
| TfiI | GAWTC | 3 cut(s) | 452, 1181, 1246 |
| Tru1I | TTAA | 6 cut(s) | 15, 509, 980, 999, 1493, 1545 |
| Tru9I | TTAA | 6 cut(s) | 15, 509, 980, 999, 1493, 1545 |
| TscAI | CASTG | 4 cut(s) | 760, 1460, 1606, 1648 |
| TseFI | GTSAC | 1 cut(s) | 70 |
| TseI | GCWGC | 4 cut(s) | 256, 937, 1763, 1828 |
| Tsp45I | GTSAC | 1 cut(s) | 70 |
| TspDTI | ATGAA | 6 cut(s) | 431, 752, 1058, 1430, 1472, 1551 |
| TspGWI | ACGGA | 1 cut(s) | 823 |
| TspRI | CASTG | 4 cut(s) | 760, 1460, 1606, 1648 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 333 |
| VpaK11BI | GGWCC | 1 cut(s) | 1381 |
| XapI | RAATTY | 3 cut(s) | 33, 1395, 1848 |
| XspI | CTAG | 5 cut(s) | 252, 800, 1370, 1445, 1832 |
| Zsp2I | ATGCAT | 1 cut(s) | 490 |