Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010372

Physical Location & Seq

Genomic Coordinates Reverse (-)

137129 .. 143863

Gene Structure 6735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG001500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3438 bp

ATGGTGATCTTGCAGGTTTGTCTTCCCCCCCTTGTTAGTAGTAGTACTCAAACAAAGCGTCCCATTATCGTTCGATCAGACTATTGTAATCATGAAAAACGTTCACTGAAGCTTCATTCTACTGTTCCTCCAAGCTTGTTGGTATCCAATTCACAGCAAACTCAAAATCCCGCTGTCTTGTTTCCCCCAGCTAATCAGAGTGTGGCAGCTATTGTGTTTGGGGATGGGCCAGAAACACAACTCTATCCATTGACAAAGAGAAGATCAGAAGGAGCCATACCTATCGCAGCAAGTTATAGACTGATTGATGCAGTTTTGAGCAACTGCATTGGCAGCAATATACACAGGATATATGCTCTGACACAATTTAACTCGACTTCTCTTAATTCCCACATTTCCAGGGCTTATTCTGGACTAGGTTTTGGAAATGAGGGGTTTGTTGAAGTAATTGCAGCATATCAAAGCTCTGATAATAATGGATGGTTTCAGGGAACTGCTGATGCTGTTAGAAGATGCCTATGGGTGCTGGAAGAGTATCCAATGTCTGAGTTTTTGGTCCTTCCTGGTTACCATCTCTACAAAATGGACTACCAGGAACTCATCAAGGCCCATCGAAACAATAAGGCAGACATCACAGTTGCAGCATCAGTTGCTAGGAGAATTCATGATCCGGGTTTTGGCTTTTTAGATGTGAATTCTGAAAATCAAGTTCTAGAGTTCAGATTGAAGTTGGAGGGAGGGCCAATTGATAATCAATCAGCCAAAGGCTCAAGGAAATCCAACGATAATGCTCTAAGTAGCATCACAAGTATGGGAATCTTTCTCATCAACAGAGATGCATTGAAAAGGCTCCTAGAAGAACATTTTCCCGAGGCAAATGACTTTAGAACTGAAGTGATTCCTGGTGCCATATCCATTGGAATGAAGATTCAAGCTTATGCATTTCATGGATACTGGGAGGACATGAGGAATATTGAAGCATTCTACCAAGCAAATATGCAAAGTACAAAGAGTACAGACGTGGGATATAACTTTTGTGATAAAGAAAGTCCAGTCCACACTTTGCGTCGTTGTCTGCCTCCAACTCTTATAACTGATTCTGTAATAACAAATAGTGTAGTTGGAGATGGTTGCATTCTTAATGGTTGCAGGATCAAAGGTACAGTAATTGGTATGAGGACAAGAATCGGAAATGGGTCAATAATCGAGGATTCAGTGATCATGGGTTCAACTTTATATCAACCAAACACAGAAGATAGTGAAAACAGGAAAGGCACAGACATTCCCATCGGAATTGGGGAAGATACTCAAATAAGGAAGGCTATTGTAGACAAGAATGCAAGGATTGGCAAGAATGTAGTGATCATTAACAAAGACAATGCCCATGAAGGGGACAGAGAAACCGATGGCTATGTCATTCGTCACGGAATAGTAGTTGTTCTTCGAAGTGCTAAGCAGAAGCAGCTCATCCCAAAGTTGAAAGTTGCCAGCAAATCAACTCGAAACATTACAGCGGTAAACATGCAAGGATTACTTAATGCCTTCTCTTATCAAATTCGTTTGAAACCCGAAATTGCTCACAAGCTTCCCGTGACAAAAACTGGGCTCCTCTCCCAAAAACTTGACCTGGTTTTTCCAAGAAGAAATTGCTTCAATGCCATTAGCTCAACAAGTGTTGATGGTGATGGAGAAGAAGAAGAAGAAGAAAGAGGTAATTTGGATTGGGAATTGGAGTTTCTTGGAGAGCTTGACAAGAAGACGAAAAACCAACCCACATCTAGGCTGCTTCAAGAAACTGAGGGCATGGATTGGTGTGTGAGGGCAAGAAAGACTGCTCTAAAGTCGATTGAAGCCAAGGGCTGGTCTCATAGAATGGAAGATATGATTACCAAAAAGAAGAAAAAGAAAAAGAACAAGAAGAAACTGGTGACGAAAAACAAAATGAATAAGAAAAGCAAGCAAGTCGAAGAAGACCTTGATTCAGAGGAAGACTTTGATATGCAAGATATAGATGCATTAGGTGGTTCTACCGATTTAAGAACAACTGTGAGTATGCTGGGAGGTGGGATGTTTGAAGAGAAAAAGGAGAAGACCATGCAAGATTTTGTTCAGAGGCTTTCCCAATTCTCAGGGCCATCTGATCGTAAGAAAGAAATCAACTTGAACAAAGCAATTGTTGAAGCACAAACTGCAGAAGAAGTATTGGAGGTTACTGCTGAGACAATAATGGCTGTGGGGAAAGGCTTGAGTCCCTCTCCCCTCTCTCCTTTGAACATTGCCACTGCTCTTCATCGAATTGCTAAGAACATGGAGAAAGTTTCGATGCTAGAGACACGTAGGTTGGCTTTTGCTCGTCAAAGAGAGATGTCTATACTTGTAGGAATAGCAATGACAGCCTTACCAGAGTGTTCAGCTCAAGGTATTTCTAATATCTCGTGGGCATTGTCTAAGATAGGAGGTGAGCTGCTTTACTTGTCAGAAATGGATAGAGTTGCAGAGGTGGCCTTAACCAAGGTTGGGGAGTTTAATTCACAGAATGTGGCTAATATCGCGGGGGCTTTTGCTTCCATGAAGCACTCTGCTTCTGATCTTTTTCCTGAGTTATCAAAGAGGGCATCAGTTATAATTCACACTTTCCAAGAGCAAGAGCTTGCTCAGGTTTTGTGGGCTTTTGCTTCTTTAAATGAGTCTGCTGAACCTTTGCTGGAATCTTTAGATAATGTTTTCAAAGATGCAAACCAATTTATATGCTGCCCAAACAAAGAACAATCGAATCTCAACCGAGAAAATGGTGGGGACAACATAGGAGATCTTGACATCAATGGCATTGCACAAGCTCCTGTGCTCAGTTTCAGAAGGGATCAGCTTGGGAACATAGCGTGGTCTTATGCTGTTCTAGGACAAATGGACCGCAGTTTTTTTTCCCATGTGTGGAGGACTCTTTGCCAATTTGAAGAGCAAAAAATTTCAGAACAGTATAGGGAGGATATCATGTTTGCTTCTCAAGTTCATCTAGTGAACCAGTGCTTGAAGCTTGAGTACCCACATCTTCATTTATCTTTAAAGAGAGATCTTGAGGAGAAAATAGCACGTGCCGGTAAAACTAAGAGATTTAACCAGAAAATGACTTCATCTTTTCAAAAGGAGGTCGCTCATCTTCTTGTTAGCACTGGCCTTGATTGGATCAAAGAGTATGATGTGGATGGGTACACTGTGGATGCTGTTGTAATTGATAAGAAGATTGCTATGGAGATTGATGGCCCAACTCATTTCTCAAGAAATACTGGGGTTCCCTTGGGACACACTATACTCAAACGCCACTACATAACTGCAGCTGGTTGGAAAGTTGTGTCTTTGTCTCATCAAGAGTGGGAAGAACTTGAAGGTGGGTTTGAGCAGCTGGACTACCTAAGAGAAATTTTGAAGGAGCACCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RAP

Protein Analysis

1145

Amino Acids

128.16

Weight (kDa)

6.65

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	70 - 337	1.1e-37	Nucleotidyl transferase
LbH_GLGC	PF25247	357 - 484	7.1e-45	GLGC left-handed parallel beta-helix domain
RESC6	PF26188	828 - 899	9.4e-06	RNA-editing substrate-binding complex 6 protein
MTES_1575	PF18741	1046 - 1125	4e-07	REase_MTES_1575
RAP	PF08373	1084 - 1139	1.4e-14	RAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31890
fragaria_vesca	FvH4_1g00100
malus_domestica	MD11G1156300.v1.1
prunus_persica	Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1
pyrus_communis	pycom11g12690
rosa_chinensis	RchiOBHm_Chr2g0084391
rosa_laevigata	RLG00000015613
rosa_multiflora	Rmu_sc0009404.1_g000009
rosa_roxburghii	Rroxscaffold_2G00156140
rosa_rugosa	Rorug01G0453000 Rorug01G0453100 Rorug01G0453200 Rorug01G0453300
rosa_samantha	Rh2AG001400 Rh2BG001300 Rh2CG001300 Rh2DG001500
rosa_wichuraiana	Rw2G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1091, 2624
Acc36I	ACCTGC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	905
AccB7I	CCANNNNNTGG	1 cut(s)	1860
AccI	GTMKAC	1 cut(s)	1329
AccII	CGCG	1 cut(s)	2552
AciI	CCGC	4 cut(s)	171, 1514, 2552, 2911
AclI	AACGTT	1 cut(s)	100
AclWI	GGATC	4 cut(s)	662, 1160, 2868, 3191
AcsI	RAATTY	5 cut(s)	660, 694, 1554, 2964, 3417
AcuI	CTGAAG	2 cut(s)	128, 912
AcvI	CACGTG	1 cut(s)	3092
AfaI	GTAC	6 cut(s)	46, 1006, 1015, 1162, 3041, 3209
AfiI	CCNNNNNNNGG	7 cut(s)	677, 1389, 1390, 1779, 1860, 2517, 2931
AflIII	ACRYGT	1 cut(s)	2333
AjiI	CACGTC	1 cut(s)	1021
AjnI	CCWGG	5 cut(s)	398, 562, 591, 901, 1626
Alw21I	GWGCWC	2 cut(s)	2847, 3432
Alw26I	GTCTC	4 cut(s)	1869, 2213, 2324, 3363
AlwI	GGATC	4 cut(s)	662, 1160, 2868, 3191
Ama87I	CYCGRG	1 cut(s)	869
AoxI	GGCC	7 cut(s)	227, 606, 740, 2132, 2502, 3172, 3259
ApoI	RAATTY	5 cut(s)	660, 694, 1554, 2964, 3417
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
Asp700I	GAANNNNTTC	2 cut(s)	864, 897
AspS9I	GGNCC	7 cut(s)	227, 556, 607, 740, 2132, 2908, 3260
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	4 cut(s)	16, 1694, 1939, 2471
AsuII	TTCGAA	1 cut(s)	1444
AvaI	CYCGRG	1 cut(s)	869
AvaII	GGWCC	2 cut(s)	556, 2908
BanI	GGYRCC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	1608
BarI	GAAGNNNNNNTAC	6 cut(s)	261, 293, 1425, 1457, 3023, 3055
BauI	CACGAG	1 cut(s)	2434
BbrPI	CACGTG	1 cut(s)	3092
BbsI	GAAGAC	5 cut(s)	14, 1763, 1977, 1995, 2096
Bbv12I	GWGCWC	2 cut(s)	2847, 3432
BcgI	CGANNNNNNTGC	2 cut(s)	1945, 1979
BciT130I	CCWGG	5 cut(s)	400, 564, 593, 903, 1628
BciVI	GTATCC	3 cut(s)	154, 546, 944
BclI	TGATCA	2 cut(s)	1218, 1362
BcnI	CCSGG	1 cut(s)	672
BcoDI	GTCTC	4 cut(s)	1869, 2213, 2324, 3363
BfaI	CTAG	8 cut(s)	416, 654, 713, 854, 1779, 2327, 2897, 3014
BfmI	CTRYAG	2 cut(s)	2190, 3330
BfuAI	ACCTGC	1 cut(s)	4
BfuI	GTATCC	3 cut(s)	154, 546, 944
BglII	AGATCT	2 cut(s)	2809, 3070
BlpI	GCTNAGC	1 cut(s)	1452
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	6 cut(s)	400, 564, 593, 672, 903, 1628
Bme18I	GGWCC	2 cut(s)	556, 2908
BmeT110I	CYCGRG	1 cut(s)	869
BmgBI	CACGTC	1 cut(s)	1021
BmgT120I	GGNCC	7 cut(s)	227, 556, 607, 740, 2132, 2908, 3260
BmiI	GGNNCC	5 cut(s)	274, 851, 907, 1607, 3291
BmrFI	CCNGG	6 cut(s)	400, 564, 593, 672, 903, 1628
BmrI	ACTGGG	3 cut(s)	964, 1611, 3294
BmuI	ACTGGG	3 cut(s)	964, 1611, 3294
BpiI	GAAGAC	5 cut(s)	14, 1763, 1977, 1995, 2096
BplI	GAGNNNNNCTC	2 cut(s)	2239, 2271
Bpu10I	CCTNAGC	1 cut(s)	2655
Bpu1102I	GCTNAGC	1 cut(s)	1452
Bpu14I	TTCGAA	1 cut(s)	1444
BpuEI	CTTGAG	7 cut(s)	754, 2266, 2400, 2988, 3056, 3095, 3259
BpuMI	CCSGG	1 cut(s)	672
BsaAI	YACGTR	2 cut(s)	2336, 3092
BsaI	GGTCTC	1 cut(s)	1869
BsaJI	CCNNGG	5 cut(s)	399, 870, 1854, 2511, 3294
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bsc4I	CCNNNNNNNGG	7 cut(s)	677, 1389, 1390, 1779, 1860, 2517, 2931
Bse118I	RCCGGY	1 cut(s)	3095
Bse1I	ACTGG	7 cut(s)	959, 1052, 1606, 1929, 3022, 3175, 3289
Bse3DI	GCAATG	3 cut(s)	2274, 2394, 2826
BseBI	CCWGG	5 cut(s)	400, 564, 593, 903, 1628
BseDI	CCNNGG	5 cut(s)	399, 870, 1854, 2511, 3294
BseGI	GGATG	6 cut(s)	229, 485, 1467, 2073, 3208, 3223
BseLI	CCNNNNNNNGG	7 cut(s)	677, 1389, 1390, 1779, 1860, 2517, 2931
BseMI	GCAATG	3 cut(s)	2274, 2394, 2826
BseMII	CTCAG	7 cut(s)	537, 1788, 2142, 2208, 2589, 2669, 2860
BseNI	ACTGG	7 cut(s)	959, 1052, 1606, 1929, 3022, 3175, 3289
BseRI	GAGGAG	2 cut(s)	1598, 3092
BseYI	CCCAGC	2 cut(s)	187, 2056
Bsh1236I	CGCG	1 cut(s)	2552
BshFI	GGCC	7 cut(s)	229, 608, 742, 2134, 2504, 3174, 3261
BshNI	GGYRCC	1 cut(s)	905
BsiHKAI	GWGCWC	2 cut(s)	2847, 3432
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	2 cut(s)	671, 3096
BslFI	GGGAC	5 cut(s)	45, 1406, 2235, 2810, 3312
BslI	CCNNNNNNNGG	7 cut(s)	677, 1389, 1390, 1779, 1860, 2517, 2931
BsmAI	GTCTC	4 cut(s)	1869, 2213, 2324, 3363
BsmFI	GGGAC	5 cut(s)	45, 1406, 2235, 2810, 3312
BsmI	GAATGC	3 cut(s)	980, 1134, 1342
BsnI	GGCC	7 cut(s)	229, 608, 742, 2134, 2504, 3174, 3261
Bso31I	GGTCTC	1 cut(s)	1869
BsoBI	CYCGRG	1 cut(s)	869
Bsp119I	TTCGAA	1 cut(s)	1444
Bsp1286I	GDGCHC	3 cut(s)	1608, 2847, 3432
Bsp1720I	GCTNAGC	1 cut(s)	1452
BspACI	CCGC	4 cut(s)	171, 1514, 2552, 2911
BspANI	GGCC	7 cut(s)	229, 608, 742, 2134, 2504, 3174, 3261
BspCNI	CTCAG	7 cut(s)	538, 1789, 2141, 2209, 2590, 2668, 2859
BspFNI	CGCG	1 cut(s)	2552
BspHI	TCATGA	2 cut(s)	91, 664
BspLI	GGNNCC	5 cut(s)	274, 851, 907, 1607, 3291
BspMAI	CTGCAG	2 cut(s)	2194, 3334
BspMI	ACCTGC	1 cut(s)	4
BspPI	GGATC	4 cut(s)	662, 1160, 2868, 3191
BspQI	GCTCTTC	2 cut(s)	2292, 2949
BspT104I	TTCGAA	1 cut(s)	1444
BspT107I	GGYRCC	1 cut(s)	905
BspTNI	GGTCTC	1 cut(s)	1869
BsrDI	GCAATG	3 cut(s)	2274, 2394, 2826
BsrFI	RCCGGY	1 cut(s)	3095
BsrI	ACTGG	7 cut(s)	959, 1052, 1606, 1929, 3022, 3175, 3289
BssAI	RCCGGY	1 cut(s)	3095
BssECI	CCNNGG	5 cut(s)	399, 870, 1854, 2511, 3294
BssSI	CACGAG	1 cut(s)	2434
BssT1I	CCWWGG	3 cut(s)	1854, 2511, 3294
Bst2BI	CACGAG	1 cut(s)	2434
Bst2UI	CCWGG	5 cut(s)	400, 564, 593, 903, 1628
Bst4CI	ACNGT	6 cut(s)	124, 637, 1165, 2047, 2976, 3214
Bst6I	CTCTTC	4 cut(s)	525, 2070, 2292, 2949
BstAPI	GCANNNNNTGC	2 cut(s)	650, 2189
BstBAI	YACGTR	2 cut(s)	2336, 3092
BstBI	TTCGAA	1 cut(s)	1444
BstC8I	GCNNGC	3 cut(s)	1489, 1958, 2652
BstEII	GGTNACC	1 cut(s)	566
BstF5I	GGATG	6 cut(s)	229, 485, 1467, 2073, 3208, 3223
BstFNI	CGCG	1 cut(s)	2552
BstMAI	GTCTC	4 cut(s)	1869, 2213, 2324, 3363
BstMWI	GCNNNNNNNGC	7 cut(s)	333, 650, 1462, 2189, 2393, 2501, 2549
BstNI	CCWGG	5 cut(s)	400, 564, 593, 903, 1628
BstNSI	RCATGY	1 cut(s)	1525
BstPI	GGTNACC	1 cut(s)	566
BstSCI	CCNGG	6 cut(s)	398, 562, 591, 670, 901, 1626
BstSFI	CTRYAG	2 cut(s)	2190, 3330
BstUI	CGCG	1 cut(s)	2552
BstV2I	GAAGAC	5 cut(s)	14, 1763, 1977, 1995, 2096
BstX2I	RGATCY	2 cut(s)	2809, 3070
BstYI	RGATCY	2 cut(s)	2809, 3070
BsuI	GTATCC	3 cut(s)	154, 546, 944
BsuRI	GGCC	7 cut(s)	229, 608, 742, 2134, 2504, 3174, 3261
BtrI	CACGTC	1 cut(s)	1021
BtsCI	GGATG	6 cut(s)	229, 485, 1467, 2073, 3208, 3223
BtsI	GCAGTG	1 cut(s)	2280
BtsIMutI	CAGTG	6 cut(s)	104, 1221, 2280, 3029, 3168, 3210
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	3 cut(s)	1489, 1958, 2652
CciI	TCATGA	2 cut(s)	91, 664
Cfr10I	RCCGGY	1 cut(s)	3095
Cfr13I	GGNCC	7 cut(s)	227, 556, 607, 740, 2132, 2908, 3260
CseI	GACGC	2 cut(s)	47, 1055
CsiI	ACCWGGT	1 cut(s)	1626
Csp6I	GTAC	6 cut(s)	45, 1005, 1014, 1161, 3040, 3208
CviQI	GTAC	6 cut(s)	45, 1005, 1014, 1161, 3040, 3208
DraI	TTTAAA	2 cut(s)	2682, 3063
Eam1104I	CTCTTC	4 cut(s)	525, 2070, 2292, 2949
EarI	CTCTTC	4 cut(s)	525, 2070, 2292, 2949
Eco130I	CCWWGG	3 cut(s)	1854, 2511, 3294
Eco24I	GRGCYC	1 cut(s)	1608
Eco31I	GGTCTC	1 cut(s)	1869
Eco32I	GATATC	1 cut(s)	2989
Eco47I	GGWCC	2 cut(s)	556, 2908
Eco57I	CTGAAG	2 cut(s)	128, 912
Eco72I	CACGTG	1 cut(s)	3092
Eco88I	CYCGRG	1 cut(s)	869
Eco91I	GGTNACC	1 cut(s)	566
EcoO65I	GGTNACC	1 cut(s)	566
EcoRI	GAATTC	2 cut(s)	660, 694
EcoRII	CCWGG	5 cut(s)	398, 562, 591, 901, 1626
EcoRV	GATATC	1 cut(s)	2989
EcoT14I	CCWWGG	3 cut(s)	1854, 2511, 3294
EcoT22I	ATGCAT	3 cut(s)	841, 943, 2017
EcoT38I	GRGCYC	1 cut(s)	1608
ErhI	CCWWGG	3 cut(s)	1854, 2511, 3294
FalI	AAGNNNNNCTT	4 cut(s)	1518, 1550, 1959, 1991
FaqI	GGGAC	5 cut(s)	45, 1406, 2235, 2810, 3312
FauI	CCCGC	2 cut(s)	178, 2545
FbaI	TGATCA	2 cut(s)	1218, 1362
FblI	GTMKAC	1 cut(s)	1329
FokI	GGATG	6 cut(s)	236, 492, 1454, 2080, 3215, 3230
FriOI	GRGCYC	1 cut(s)	1608
FspBI	CTAG	8 cut(s)	416, 654, 713, 854, 1779, 2327, 2897, 3014
GsaI	CCCAGC	2 cut(s)	191, 2060
HaeIII	GGCC	7 cut(s)	229, 608, 742, 2134, 2504, 3174, 3261
HapII	CCGG	2 cut(s)	671, 3096
HgaI	GACGC	2 cut(s)	47, 1055
HindIII	AAGCTT	5 cut(s)	110, 133, 933, 1583, 3032
HpaII	CCGG	2 cut(s)	671, 3096
HphI	GGTGA	4 cut(s)	16, 1694, 1939, 2471
Hpy166II	GTNNAC	6 cut(s)	104, 1057, 1330, 1519, 3019, 3210
Hpy8I	GTNNAC	6 cut(s)	104, 1057, 1330, 1519, 3019, 3210
Hpy99I	CGWCG	1 cut(s)	1071
HpyAV	CCTTC	8 cut(s)	263, 569, 1312, 1382, 1552, 2850, 3377, 3418
HpyCH4III	ACNGT	6 cut(s)	124, 637, 1165, 2047, 2976, 3214
HpyCH4IV	ACGT	4 cut(s)	100, 1020, 2335, 3091
HpyF10VI	GCNNNNNNNGC	7 cut(s)	333, 650, 1462, 2189, 2393, 2501, 2549
HpySE526I	ACGT	4 cut(s)	100, 1020, 2335, 3091
Ksp22I	TGATCA	2 cut(s)	1218, 1362
LguI	GCTCTTC	2 cut(s)	2292, 2949
LmnI	GCTCC	5 cut(s)	272, 855, 1611, 2842, 3427
MabI	ACCWGGT	1 cut(s)	1626
MaeI	CTAG	8 cut(s)	416, 654, 713, 854, 1779, 2327, 2897, 3014
MaeII	ACGT	4 cut(s)	100, 1020, 2335, 3091
MaeIII	GTNAC	5 cut(s)	566, 1421, 1591, 1927, 2209
MfeI	CAATTG	2 cut(s)	744, 2172
MflI	RGATCY	2 cut(s)	2809, 3070
MhlI	GDGCHC	3 cut(s)	1608, 2847, 3432
MlyI	GAGTC	3 cut(s)	2257, 2696, 2932
MmeI	TCCRAC	5 cut(s)	711, 804, 1102, 1106, 3320
Mph1103I	ATGCAT	3 cut(s)	841, 943, 2017
MroXI	GAANNNNTTC	2 cut(s)	864, 897
MslI	CAYNNNNRTG	2 cut(s)	809, 920
MspA1I	CMGCKG	4 cut(s)	173, 1514, 3335, 3400
MspI	CCGG	2 cut(s)	671, 3096
MspR9I	CCNGG	6 cut(s)	400, 564, 593, 672, 903, 1628
MunI	CAATTG	2 cut(s)	744, 2172
Mva1269I	GAATGC	3 cut(s)	980, 1134, 1342
MvaI	CCWGG	5 cut(s)	400, 564, 593, 903, 1628
MvnI	CGCG	1 cut(s)	2552
MwoI	GCNNNNNNNGC	7 cut(s)	333, 650, 1462, 2189, 2393, 2501, 2549
NciI	CCSGG	1 cut(s)	672
NlaIV	GGNNCC	5 cut(s)	274, 851, 907, 1607, 3291
NmuCI	GTSAC	3 cut(s)	1421, 1591, 1927
NsiI	ATGCAT	3 cut(s)	841, 943, 2017
NspI	RCATGY	1 cut(s)	1525
NspV	TTCGAA	1 cut(s)	1444
PagI	TCATGA	2 cut(s)	91, 664
PciSI	GCTCTTC	2 cut(s)	2292, 2949
PctI	GAATGC	3 cut(s)	980, 1134, 1342
PdmI	GAANNNNTTC	2 cut(s)	864, 897
PfeI	GAWTC	9 cut(s)	816, 898, 928, 1097, 1185, 1211, 1979, 2708, 2773
PflMI	CCANNNNNTGG	1 cut(s)	1860
PleI	GAGTC	3 cut(s)	2256, 2695, 2932
PmaCI	CACGTG	1 cut(s)	3092
PmlI	CACGTG	1 cut(s)	3092
PpsI	GAGTC	3 cut(s)	2256, 2695, 2932
Ppu21I	YACGTR	2 cut(s)	2336, 3092
PsiI	TTATAA	2 cut(s)	1091, 2624
Psp1406I	AACGTT	1 cut(s)	100
Psp6I	CCWGG	5 cut(s)	398, 562, 591, 901, 1626
PspCI	CACGTG	1 cut(s)	3092
PspEI	GGTNACC	1 cut(s)	566
PspFI	CCCAGC	2 cut(s)	187, 2056
PspGI	CCWGG	5 cut(s)	398, 562, 591, 901, 1626
PspN4I	GGNNCC	5 cut(s)	274, 851, 907, 1607, 3291
PspPI	GGNCC	7 cut(s)	227, 556, 607, 740, 2132, 2908, 3260
PstI	CTGCAG	2 cut(s)	2194, 3334
PsuI	RGATCY	2 cut(s)	2809, 3070
PvuII	CAGCTG	2 cut(s)	3335, 3400
RsaI	GTAC	6 cut(s)	46, 1006, 1015, 1162, 3041, 3209
RsaNI	GTAC	6 cut(s)	45, 1005, 1014, 1161, 3040, 3208
RseI	CAYNNNNRTG	2 cut(s)	809, 920
SapI	GCTCTTC	2 cut(s)	2292, 2949
Sau96I	GGNCC	7 cut(s)	227, 556, 607, 740, 2132, 2908, 3260
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	3 cut(s)	2257, 2696, 2932
ScrFI	CCNGG	6 cut(s)	400, 564, 593, 672, 903, 1628
SduI	GDGCHC	3 cut(s)	1608, 2847, 3432
SexAI	ACCWGGT	1 cut(s)	1626
SfcI	CTRYAG	2 cut(s)	2190, 3330
SfuI	TTCGAA	1 cut(s)	1444
SinI	GGWCC	2 cut(s)	556, 2908
SmiMI	CAYNNNNRTG	2 cut(s)	809, 920
SmlI	CTYRAG	7 cut(s)	769, 2245, 2415, 3003, 3035, 3074, 3274
SmoI	CTYRAG	7 cut(s)	769, 2245, 2415, 3003, 3035, 3074, 3274
SsiI	CCGC	4 cut(s)	171, 1514, 2552, 2911
SspI	AATATT	1 cut(s)	973
SspMI	CTAG	8 cut(s)	416, 654, 713, 854, 1779, 2327, 2897, 3014
StyD4I	CCNGG	6 cut(s)	398, 562, 591, 670, 901, 1626
StyI	CCWWGG	3 cut(s)	1854, 2511, 3294
TaaI	ACNGT	6 cut(s)	124, 637, 1165, 2047, 2976, 3214
TaiI	ACGT	4 cut(s)	103, 1023, 2338, 3094
TatI	WGTACW	3 cut(s)	44, 1004, 1013
TfiI	GAWTC	9 cut(s)	816, 898, 928, 1097, 1185, 1211, 1979, 2708, 2773
TscAI	CASTG	6 cut(s)	111, 1221, 2287, 3029, 3175, 3217
TseFI	GTSAC	3 cut(s)	1421, 1591, 1927
Tsp45I	GTSAC	3 cut(s)	1421, 1591, 1927
TspGWI	ACGGA	1 cut(s)	1440
TspRI	CASTG	6 cut(s)	111, 1221, 2287, 3029, 3175, 3217
Van91I	CCANNNNNTGG	1 cut(s)	1860
VpaK11BI	GGWCC	2 cut(s)	556, 2908
XapI	RAATTY	5 cut(s)	660, 694, 1554, 2964, 3417
XbaI	TCTAGA	1 cut(s)	712
XceI	RCATGY	1 cut(s)	1525
XmiI	GTMKAC	1 cut(s)	1329
XmnI	GAANNNNTTC	2 cut(s)	864, 897
XspI	CTAG	8 cut(s)	416, 654, 713, 854, 1779, 2327, 2897, 3014
ZrmI	AGTACT	1 cut(s)	46
Zsp2I	ATGCAT	3 cut(s)	841, 943, 2017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.