Rw2G000110

RAP

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
154670 .. 156931
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G000110.1

Sequence Viewer

Length: 1908 bp
ATGCAAGGATTACTTAATGCCTTCTCTTATCAAATTCGTTTGAAACCCGAAATTGCTCACAAGCTTCCCGTGACAAAAACTGGGCTCCTCTCCCAAAAACTTGACCTGGTTTTTCCAAGAAGAAATTGCTTCAATGCCATTAGCTCAACAAGTGTTGATGGTGATGGAGAAGAAGAAAGAGGTAATTTGGATTGGGAATTGGAGTTTCTTGGAGAGCTTGACAAGAAGACGAAAAACCAACCCACATCTAGGCTGCTTCAAGAAACTGAGGGCATGGATTGGTGTGTTAGGGCAAGAAAGACTGCTCTAAAGTCGATTGAAGCCAAGGGCTGGTCTCATAGAATGGAAGATATGATTACCAAAAAGAAGAAAAAGAAAAAGAACAAGAAGAAACTGGTGACAAAAAACAAAATGAATAAGAAAAGCAAGCAAGTCGAAGAAGACCTTGATTCAGAGGAAGACTTTGATATGCAAGATATAGATGCATTAGGTGGTTCTACCGATTTAAGAACAACTGTGAGTATGCTGGGAGGTGGGATGTTTGAAGAGAAAAAGGAGAAGACTATGCAAGATTTTGTTCAGAGGCTTTCCCAATTCTCAGGGCCATCTGATCGCAAGAAAGAAATCAACTTGAACAAAGCAATTGTTGAAGCACAAACTGCAGAAGAAGTATTGGAGGTTACTGCTGAGACAATAATGGCTGTGGGGAAAGGCTTGAGTCCCTCTCCCCTCTCTCCTTTGAACATTGCCACTGCTCTTCATCGAATTGCTAAGAACATGGAGAAAGTTTCGATGCTAGAGACACGTAGGTTGGCTTTTGCTCGTCAAAGAGAGATGTCTATACTTGTAGGAATAGCAATGACAGCCTTACCAGAGTGTTCAGCTCAAGGTATTTCTAATATCTCATGGGCATTGTCTAAGATAGGAGGTGAGCTGCTTTACTTGTCAGAAATGGATAGAGTTGCAGAGGTGGCCTTAACCAAGGTTGGGGAGTTTAATTCACAGAATGTGGCTAATATCGCGGGGGCTTTTGCTTCCATGAAGCACTCTGCTTCTGATCTTTTTCCTGAGTTATCAAAGAGGGCATCAGTTATAATTCACACTTTCCAAGAGCAAGAGCTTGCTCAGGTTTTGTGGGCTTTTGCTTCTTTACATGAGTCTGCTGAACCTTTGCTGGAATCTTTAGATAATGTTTTCAAAGATGCAAACCAATTTATATGCTGCCCAAACAAAGAACAATCGAATCTCAACCGAGAAAATGGTGTGGACAACATAGGAGATCTTGACATCAATGGCATTGCACAAGCTCCTGTGCTCAGTTTCAGAAGGGATCAGCTTGGGAACATAGCGTGGTCTTATGCTGTTCTAGGACAAATGGACCGCAGTTTTTTTTCCCATGTGTGGAGGACTCTTTGCCAATTTGAAGAGCAAAAAATTTCAGAACAGTATAGGGAGGATATCATGTTTGCTTCTCAAGTTCATCTAGTGAACCAGTGCTTGAAGCTTGAGTACCCACATCTTCATTTATCTTTAAAGAGAGATCTTGAGGAGAAAATAGCACGTGCCGGTAAAACTAAGAGATTTAACCAGAAAATGACTTCATCTTTTCAAAAGGAGGTCGCTCATCTTCTTGTTAGCACTGGCCTTGATTGGATCAAAGAGTATGATGTGGACGGGTACACTGTGGATGCTGTTGTAATTGATAAGAAGATTGCTATGGAGATTGATGGCCCAACTCATTTCTCAAGAAATACTGGGGTTCCCTTGGGACACACTATACTCAAACGCCGCTACATAACTGCAGCTGGTTGGAAAGTTGTGTCTTTGTCTCATCAAGAGTGGGAAGAACTTGAAGGTGGGTTTGAGCAGCTAGACTACCTAAGAGAAATTTTGAAGGAGCACCTTTAG

Protein Analysis

635

Amino Acids

71.83

Weight (kDa)

6.27

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MTES_1575 PF18741 536 - 615 1.2e-07 REase_MTES_1575
RAP PF08373 574 - 629 5e-16 RAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1094
AccB7I CCANNNNNTGG 1 cut(s) 330
AccII CGCG 1 cut(s) 1022
AciI CCGC 3 cut(s) 1022, 1381, 1789
AclWI GGATC 2 cut(s) 1338, 1661
AcsI RAATTY 3 cut(s) 33, 1434, 1887
AcvI CACGTG 1 cut(s) 1562
AfaI GTAC 2 cut(s) 1511, 1679
AfiI CCNNNNNNNGG 4 cut(s) 249, 330, 987, 1401
AflIII ACRYGT 1 cut(s) 803
AjnI CCWGG 1 cut(s) 105
Alw21I GWGCWC 2 cut(s) 1317, 1902
Alw26I GTCTC 4 cut(s) 339, 683, 794, 1833
AlwI GGATC 2 cut(s) 1338, 1661
AoxI GGCC 4 cut(s) 602, 972, 1642, 1729
ApeKI GCWGC 5 cut(s) 253, 934, 1221, 1802, 1867
ApoI RAATTY 3 cut(s) 33, 1434, 1887
AspS9I GGNCC 3 cut(s) 602, 1378, 1730
AsuHPI GGTGA 3 cut(s) 173, 409, 941
AvaII GGWCC 1 cut(s) 1378
BanII GRGCYC 1 cut(s) 87
BarI GAAGNNNNNNTAC 2 cut(s) 1493, 1525
BbrPI CACGTG 1 cut(s) 1562
BbsI GAAGAC 4 cut(s) 233, 447, 465, 566
Bbv12I GWGCWC 2 cut(s) 1317, 1902
BbvI GCAGC 5 cut(s) 240, 921, 1208, 1814, 1879
BccI CCATC 4 cut(s) 152, 158, 613, 1721
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BciT130I CCWGG 1 cut(s) 107
BcoDI GTCTC 4 cut(s) 339, 683, 794, 1833
BfaI CTAG 5 cut(s) 249, 797, 1367, 1484, 1871
BfmI CTRYAG 2 cut(s) 660, 1800
BglII AGATCT 2 cut(s) 1279, 1540
BisI GCNGC 6 cut(s) 254, 935, 1222, 1789, 1803, 1868
BlsI GCNGC 6 cut(s) 255, 936, 1223, 1790, 1804, 1869
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 1 cut(s) 1378
BmgT120I GGNCC 3 cut(s) 602, 1378, 1730
BmiI GGNNCC 2 cut(s) 86, 1761
BmrFI CCNGG 1 cut(s) 107
BmrI ACTGGG 2 cut(s) 90, 1764
BmsI GCATC 5 cut(s) 472, 783, 1094, 1192, 1678
BmuI ACTGGG 2 cut(s) 90, 1764
BpiI GAAGAC 4 cut(s) 233, 447, 465, 566
BplI GAGNNNNNCTC 2 cut(s) 709, 741
Bpu10I CCTNAGC 1 cut(s) 1125
BpuEI CTTGAG 6 cut(s) 736, 870, 1458, 1526, 1565, 1729
BsaAI YACGTR 2 cut(s) 806, 1562
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 324, 981, 1764
Bsc4I CCNNNNNNNGG 4 cut(s) 249, 330, 987, 1401
Bse118I RCCGGY 1 cut(s) 1565
Bse1I ACTGG 5 cut(s) 85, 399, 1492, 1645, 1759
Bse3DI GCAATG 3 cut(s) 744, 864, 1296
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 3 cut(s) 324, 981, 1764
BseGI GGATG 2 cut(s) 543, 1693
BseLI CCNNNNNNNGG 4 cut(s) 249, 330, 987, 1401
BseMI GCAATG 3 cut(s) 744, 864, 1296
BseMII CTCAG 6 cut(s) 258, 612, 678, 1059, 1139, 1330
BseNI ACTGG 5 cut(s) 85, 399, 1492, 1645, 1759
BseRI GAGGAG 2 cut(s) 77, 1562
BseXI GCAGC 5 cut(s) 240, 921, 1208, 1814, 1879
BseYI CCCAGC 1 cut(s) 526
Bsh1236I CGCG 1 cut(s) 1022
BshFI GGCC 4 cut(s) 604, 974, 1644, 1731
BsiHKAI GWGCWC 2 cut(s) 1317, 1902
BsiSI CCGG 1 cut(s) 1566
BslFI GGGAC 2 cut(s) 705, 1782
BslI CCNNNNNNNGG 4 cut(s) 249, 330, 987, 1401
BsmAI GTCTC 4 cut(s) 339, 683, 794, 1833
BsmFI GGGAC 2 cut(s) 705, 1782
BsnI GGCC 4 cut(s) 604, 974, 1644, 1731
Bso31I GGTCTC 1 cut(s) 339
Bsp1286I GDGCHC 3 cut(s) 87, 1317, 1902
Bsp143I GATC 6 cut(s) 610, 1057, 1279, 1330, 1540, 1653
BspACI CCGC 3 cut(s) 1022, 1381, 1789
BspANI GGCC 4 cut(s) 604, 974, 1644, 1731
BspCNI CTCAG 6 cut(s) 259, 611, 679, 1060, 1138, 1329
BspFNI CGCG 1 cut(s) 1022
BspLI GGNNCC 2 cut(s) 86, 1761
BspMAI CTGCAG 2 cut(s) 664, 1804
BspPI GGATC 2 cut(s) 1338, 1661
BspQI GCTCTTC 2 cut(s) 762, 1419
BspTNI GGTCTC 1 cut(s) 339
BsrDI GCAATG 3 cut(s) 744, 864, 1296
BsrFI RCCGGY 1 cut(s) 1565
BsrI ACTGG 5 cut(s) 85, 399, 1492, 1645, 1759
BssAI RCCGGY 1 cut(s) 1565
BssECI CCNNGG 3 cut(s) 324, 981, 1764
BssMI GATC 6 cut(s) 610, 1057, 1279, 1330, 1540, 1653
BssT1I CCWWGG 3 cut(s) 324, 981, 1764
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 3 cut(s) 517, 1446, 1684
Bst6I CTCTTC 3 cut(s) 540, 762, 1419
BstAPI GCANNNNNTGC 1 cut(s) 659
BstBAI YACGTR 2 cut(s) 806, 1562
BstC8I GCNNGC 2 cut(s) 428, 1122
BstF5I GGATG 2 cut(s) 543, 1693
BstFNI CGCG 1 cut(s) 1022
BstKTI GATC 6 cut(s) 613, 1060, 1282, 1333, 1543, 1656
BstMAI GTCTC 4 cut(s) 339, 683, 794, 1833
BstMBI GATC 6 cut(s) 610, 1057, 1279, 1330, 1540, 1653
BstMWI GCNNNNNNNGC 4 cut(s) 659, 863, 971, 1019
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 2 cut(s) 660, 1800
BstUI CGCG 1 cut(s) 1022
BstV1I GCAGC 5 cut(s) 240, 921, 1208, 1814, 1879
BstV2I GAAGAC 4 cut(s) 233, 447, 465, 566
BstX2I RGATCY 2 cut(s) 1279, 1540
BstYI RGATCY 2 cut(s) 1279, 1540
BsuRI GGCC 4 cut(s) 604, 974, 1644, 1731
BtsCI GGATG 2 cut(s) 543, 1693
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 4 cut(s) 750, 1499, 1638, 1680
Cac8I GCNNGC 2 cut(s) 428, 1122
Cfr10I RCCGGY 1 cut(s) 1565
Cfr13I GGNCC 3 cut(s) 602, 1378, 1730
CsiI ACCWGGT 1 cut(s) 105
Csp6I GTAC 2 cut(s) 1510, 1678
CviAII CATG 7 cut(s) 274, 778, 906, 1039, 1154, 1397, 1462
CviQI GTAC 2 cut(s) 1510, 1678
DpnI GATC 6 cut(s) 612, 1059, 1281, 1332, 1542, 1655
DpnII GATC 6 cut(s) 610, 1057, 1279, 1330, 1540, 1653
DraI TTTAAA 1 cut(s) 1533
Eam1104I CTCTTC 3 cut(s) 540, 762, 1419
EarI CTCTTC 3 cut(s) 540, 762, 1419
Eco130I CCWWGG 3 cut(s) 324, 981, 1764
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 339
Eco32I GATATC 1 cut(s) 1459
Eco47I GGWCC 1 cut(s) 1378
Eco72I CACGTG 1 cut(s) 1562
EcoRII CCWGG 1 cut(s) 105
EcoRV GATATC 1 cut(s) 1459
EcoT14I CCWWGG 3 cut(s) 324, 981, 1764
EcoT22I ATGCAT 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 3 cut(s) 324, 981, 1764
FaeI CATG 7 cut(s) 277, 781, 909, 1042, 1157, 1400, 1465
FalI AAGNNNNNCTT 3 cut(s) 29, 429, 461
FaqI GGGAC 2 cut(s) 705, 1782
FatI CATG 7 cut(s) 273, 777, 905, 1038, 1153, 1396, 1461
FauI CCCGC 1 cut(s) 1015
Fnu4HI GCNGC 6 cut(s) 254, 935, 1222, 1789, 1803, 1868
FokI GGATG 2 cut(s) 550, 1700
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 6 cut(s) 254, 935, 1222, 1789, 1803, 1868
FspBI CTAG 5 cut(s) 249, 797, 1367, 1484, 1871
GluI GCNGC 6 cut(s) 254, 935, 1222, 1789, 1803, 1868
GsaI CCCAGC 1 cut(s) 530
HaeIII GGCC 4 cut(s) 604, 974, 1644, 1731
HapII CCGG 1 cut(s) 1566
Hin1II CATG 7 cut(s) 277, 781, 909, 1042, 1157, 1400, 1465
HindIII AAGCTT 2 cut(s) 62, 1502
HinfI GANTC 6 cut(s) 449, 718, 1157, 1178, 1243, 1408
HpaII CCGG 1 cut(s) 1566
HphI GGTGA 3 cut(s) 173, 409, 941
Hpy166II GTNNAC 4 cut(s) 1267, 1489, 1672, 1680
Hpy188I TCNGA 7 cut(s) 454, 582, 610, 949, 1057, 1325, 1441
Hpy188III TCNNGA 6 cut(s) 260, 1067, 1283, 1544, 1746, 1835
Hpy8I GTNNAC 4 cut(s) 1267, 1489, 1672, 1680
HpyAV CCTTC 4 cut(s) 31, 1320, 1847, 1888
HpyCH4III ACNGT 3 cut(s) 517, 1446, 1684
HpyCH4IV ACGT 2 cut(s) 805, 1561
HpyCH4V TGCA 9 cut(s) 4, 472, 485, 568, 662, 965, 1205, 1301, 1802
HpyF10VI GCNNNNNNNGC 4 cut(s) 659, 863, 971, 1019
HpySE526I ACGT 2 cut(s) 805, 1561
Hsp92II CATG 7 cut(s) 277, 781, 909, 1042, 1157, 1400, 1465
Kzo9I GATC 6 cut(s) 610, 1057, 1279, 1330, 1540, 1653
LguI GCTCTTC 2 cut(s) 762, 1419
LmnI GCTCC 3 cut(s) 90, 1312, 1897
Lsp1109I GCAGC 5 cut(s) 240, 921, 1208, 1814, 1879
LweI GCATC 5 cut(s) 472, 783, 1094, 1192, 1678
MabI ACCWGGT 1 cut(s) 105
MaeI CTAG 5 cut(s) 249, 797, 1367, 1484, 1871
MaeII ACGT 2 cut(s) 805, 1561
MaeIII GTNAC 3 cut(s) 70, 397, 679
MalI GATC 6 cut(s) 612, 1059, 1281, 1332, 1542, 1655
MboI GATC 6 cut(s) 610, 1057, 1279, 1330, 1540, 1653
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 2 cut(s) 1279, 1540
MhlI GDGCHC 3 cut(s) 87, 1317, 1902
MlyI GAGTC 3 cut(s) 727, 1166, 1402
MmeI TCCRAC 1 cut(s) 1790
Mph1103I ATGCAT 1 cut(s) 487
MseI TTAA 6 cut(s) 15, 506, 977, 996, 1532, 1584
MspA1I CMGCKG 1 cut(s) 1805
MspI CCGG 1 cut(s) 1566
MspR9I CCNGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 642
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 1022
MwoI GCNNNNNNNGC 4 cut(s) 659, 863, 971, 1019
NdeII GATC 6 cut(s) 610, 1057, 1279, 1330, 1540, 1653
NlaIII CATG 7 cut(s) 277, 781, 909, 1042, 1157, 1400, 1465
NlaIV GGNNCC 2 cut(s) 86, 1761
NmuCI GTSAC 2 cut(s) 70, 397
NsiI ATGCAT 1 cut(s) 487
PciSI GCTCTTC 2 cut(s) 762, 1419
PfeI GAWTC 3 cut(s) 449, 1178, 1243
PflMI CCANNNNNTGG 1 cut(s) 330
PkrI GCNGC 6 cut(s) 255, 936, 1223, 1790, 1804, 1869
PleI GAGTC 3 cut(s) 726, 1165, 1402
PmaCI CACGTG 1 cut(s) 1562
PmlI CACGTG 1 cut(s) 1562
PpsI GAGTC 3 cut(s) 726, 1165, 1402
Ppu21I YACGTR 2 cut(s) 806, 1562
PsiI TTATAA 1 cut(s) 1094
Psp6I CCWGG 1 cut(s) 105
PspCI CACGTG 1 cut(s) 1562
PspFI CCCAGC 1 cut(s) 526
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 86, 1761
PspPI GGNCC 3 cut(s) 602, 1378, 1730
PstI CTGCAG 2 cut(s) 664, 1804
PsuI RGATCY 2 cut(s) 1279, 1540
PvuII CAGCTG 1 cut(s) 1805
RsaI GTAC 2 cut(s) 1511, 1679
RsaNI GTAC 2 cut(s) 1510, 1678
SapI GCTCTTC 2 cut(s) 762, 1419
SaqAI TTAA 6 cut(s) 15, 506, 977, 996, 1532, 1584
SatI GCNGC 6 cut(s) 254, 935, 1222, 1789, 1803, 1868
Sau3AI GATC 6 cut(s) 610, 1057, 1279, 1330, 1540, 1653
Sau96I GGNCC 3 cut(s) 602, 1378, 1730
SchI GAGTC 3 cut(s) 727, 1166, 1402
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 3 cut(s) 87, 1317, 1902
SexAI ACCWGGT 1 cut(s) 105
SfaNI GCATC 5 cut(s) 472, 783, 1094, 1192, 1678
SfcI CTRYAG 2 cut(s) 660, 1800
SinI GGWCC 1 cut(s) 1378
SmlI CTYRAG 6 cut(s) 715, 885, 1473, 1505, 1544, 1744
SmoI CTYRAG 6 cut(s) 715, 885, 1473, 1505, 1544, 1744
SsiI CCGC 3 cut(s) 1022, 1381, 1789
SspMI CTAG 5 cut(s) 249, 797, 1367, 1484, 1871
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 3 cut(s) 324, 981, 1764
TaaI ACNGT 3 cut(s) 517, 1446, 1684
TaiI ACGT 2 cut(s) 808, 1564
TaqI TCGA 5 cut(s) 314, 435, 763, 791, 1241
TauI GCSGC 1 cut(s) 1791
TfiI GAWTC 3 cut(s) 449, 1178, 1243
Tru1I TTAA 6 cut(s) 15, 506, 977, 996, 1532, 1584
Tru9I TTAA 6 cut(s) 15, 506, 977, 996, 1532, 1584
TscAI CASTG 4 cut(s) 757, 1499, 1645, 1687
TseFI GTSAC 2 cut(s) 70, 397
TseI GCWGC 5 cut(s) 253, 934, 1221, 1802, 1867
Tsp45I GTSAC 2 cut(s) 70, 397
TspDTI ATGAA 6 cut(s) 428, 749, 1055, 1469, 1511, 1590
TspRI CASTG 4 cut(s) 757, 1499, 1645, 1687
Van91I CCANNNNNTGG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 1378
XapI RAATTY 3 cut(s) 33, 1434, 1887
XspI CTAG 5 cut(s) 249, 797, 1367, 1484, 1871
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.