pycom11g12690

RAP

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
11622527 .. 11625033
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12690.1

Sequence Viewer

Length: 2010 bp
ATGCAAGGATTGCTTACCACTTTCCCCAATCAAATTTTCTTCAAACCCTTCATTTTTAAACCCGATATTGTTCATAAGCTTCCATTAACGAAAACTGGGGTCTTAGCTCGAAAGCTTGAGGTGGGTTTTTCGAGAAGACGTTGTTTAAGTGTAGGAAGAGATAATACTGCTGTTAGTTCTAGGACTGTTGATGGTGGCGATGATAGTGGTGAAGAAGAAGAGAAAGGAGATGGGAATTTGGATTGGGAGTTGGAGTTTCTTGGGGAGCTTGACCCTTTGGGTTTCCAGGCCCCTAGGAAGAGGAAAAAGGAGCAAAATTCTAAGTTGGTTGAAAGTGAGGGAATGGATTGGTGTGTGAGGGCGAGAAAGACTGCACTGAAAGTGATCGAGGCAAAAGGATGGTCTGAGGCAATGGAGGATATGATTACCGTAAAGAAGAAAAAGAAGAAGAACAAGAAGAAGGTGGGGAAAGTAGAGAAAATGGGAAAGAAAATCAAGGAAATTGAAGAAGATTTAGATGTTGATTCGGAGGAAGACTTTGATATGCCGGACATGAATAGTCTGGACAGTTCTAGTCATTTAAGAAGAACTGTGAGTGTGCTGGGGGGTGGGATGTTTGAAGAGAAGAAGGAGAAAACTAGGGAAAAGTTTGTTCAGAGGCTTTCCCAATTCTCGGGGCCATCAGATCGCAAGAAAGAAATCAACTTGAATAGAGCAATTATTGAGGCACAGACTGCGGAAGAAGTGTTGGAGGTTACTGCAGAGACAATCATGGCTGTTGGGAAGGGCTTGAGTCCCTCACCTCTCTCGCCTTTAAACATTGCCACCGCTCTTCATCGGATTGCTAAGAACATGGAGCAAGTTGCAATGACAGAGACACGTAGGTTGGCTTTTGCTCGTCAAAGAGAGATGTCTATGCTTGTGGGAATAGCAATGACAGCCTTGCCAGAGTGTTCAGCTCAAGGTATCTCTAATATCTCGTGGGCGTTGTCTAAGATCGGCGGTGATCTACTTTACTTGTCAGAAATGGATAGAGTTGCGGAGGTGGCCTTAACCAAGGTCGAGGAGTTTAATTCACAGAATGTGGCTAATGTTGCTGGTGCTTTTGCTTTGATGAAGCACTCCGTTCCTGATCTCTTTTCTGAATTATCAAAACGGGCATCAGATATAATTCACACTTTCCACGAGCAAGAGCTTGCTCAGGTGTTGTGGGCTTTTGCTTCGTTATCAGAGTCTGCTGAACGTTTGCTGGACTCCTTAGATATTGTTTTCAAAGATTCCAGCCAATTTTTATGCTTCTCAAGCAAAGAAAAATCAGAATTTTACAGAGAAAAGAGTGTGGACAACATAGAAGATCTTGACTTTGATGGCAGCGATGTAAGCGCTCCTGTGCTCAGTTTCCATAGGGATCAGCTTGGGAGTATAGTGTGGTCTTATGCTGTTTTTGGACAAATGGATCGGACTTTCTTTTCCCATGTGTGGAGAACTCTGAGCCAATTTGAAGAGCAAAGGATTTCAGAGCAGTATAGGGAAGATATCATGTTTGCGTCTCAGGTTCATCTAGTGAACCAGTGCTTGAAGCTTGAGTACCCGCACCTTCATTTATCTCTACGGGAAGATCTTGAGGAGAAAATTGCTCGGGCTGGTAAAACTAAGAGATTTAATCAGAAAACGACATCGTCATTTCAAAAGGAGGTCGCTCGTCTTCTTGTCAGCACTGGTCTTGATTGGGTCAAAGAATATGTGGTGGACGGGTACACTCTAGATGCCGTCGTGATTGATAAGAAGGTTGCTATGGAGATTGATGGCCCAACGCATTTCTCAAGAAATACTTGGGTTCCCTTGGGACATACTATGTTGAAACGCCGCTACATAACTGCTGCTGGTTGGAAAGTAGTGTCAGTGGCTCATCAAGGGTGGGAAGAACTTCAAGGTGGTTTTGAGCAGCTAGAGTACCTACGAGAAATTCTGAAGGAGCACTTATATGCAGACAATACCGTCCAAGTATAG

Protein Analysis

670

Amino Acids

75.95

Weight (kDa)

5.89

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RESC6 PF26188 305 - 410 2.8e-06 RNA-editing substrate-binding complex 6 protein
MTES_1575 PF18741 562 - 641 4.9e-07 REase_MTES_1575
RAP PF08373 600 - 655 2.8e-13 RAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1997
AccBSI CCGCTC 1 cut(s) 830
AciI CCGC 6 cut(s) 737, 828, 1002, 1040, 1592, 1867
AclI AACGTT 1 cut(s) 1243
AclWI GGATC 2 cut(s) 1416, 1464
AcsI RAATTY 5 cut(s) 33, 235, 316, 1319, 1965
AcuI CTGAAG 1 cut(s) 1991
AfaI GTAC 3 cut(s) 1589, 1757, 1955
AfeI AGCGCT 1 cut(s) 1384
AfiI CCNNNNNNNGG 2 cut(s) 673, 1479
AflIII ACRYGT 1 cut(s) 878
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 9 cut(s) 79, 107, 115, 268, 959, 1195, 1414, 1582, 1948
AluI AGCT 9 cut(s) 79, 107, 115, 268, 959, 1195, 1414, 1582, 1948
Alw21I GWGCWC 2 cut(s) 1395, 1980
Alw26I GTCTC 3 cut(s) 758, 869, 1554
AlwI GGATC 2 cut(s) 1416, 1464
AlwNI CAGNNNCTG 1 cut(s) 1235
Ama87I CYCGRG 2 cut(s) 673, 1638
Aor51HI AGCGCT 1 cut(s) 1384
AoxI GGCC 4 cut(s) 288, 677, 1047, 1807
ApeKI GCWGC 3 cut(s) 1371, 1880, 1945
ApoI RAATTY 5 cut(s) 33, 235, 316, 1319, 1965
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
Asp700I GAANNNNTTC 1 cut(s) 1926
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 1 cut(s) 1385
AspS9I GGNCC 3 cut(s) 289, 677, 1808
AsuHPI GGTGA 3 cut(s) 221, 792, 1016
AvaI CYCGRG 2 cut(s) 673, 1638
AvrII CCTAGG 1 cut(s) 293
BarI GAAGNNNNNNTAC 4 cut(s) 148, 180, 1571, 1603
BauI CACGAG 2 cut(s) 979, 1184
BbsI GAAGAC 3 cut(s) 142, 540, 1697
Bbv12I GWGCWC 2 cut(s) 1395, 1980
BbvI GCAGC 3 cut(s) 1383, 1867, 1957
BccI CCATC 6 cut(s) 185, 224, 393, 688, 1361, 1799
BceAI ACGGC 1 cut(s) 1754
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 3 cut(s) 758, 869, 1554
BfaI CTAG 7 cut(s) 180, 294, 573, 639, 1562, 1763, 1949
BfmI CTRYAG 1 cut(s) 759
BfoI RGCGCY 1 cut(s) 1386
BglII AGATCT 2 cut(s) 1354, 1618
BisI GCNGC 4 cut(s) 1372, 1867, 1881, 1946
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 4 cut(s) 1373, 1868, 1882, 1947
Bme1390I CCNGG 1 cut(s) 287
BmeT110I CYCGRG 2 cut(s) 673, 1638
BmgT120I GGNCC 3 cut(s) 289, 677, 1808
BmiI GGNNCC 3 cut(s) 291, 678, 1839
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 2 cut(s) 1169, 1756
BmuI ACTGGG 1 cut(s) 105
BpiI GAAGAC 3 cut(s) 142, 540, 1697
Bpu10I CCTNAGC 1 cut(s) 1200
BpuEI CTTGAG 7 cut(s) 137, 811, 945, 1285, 1604, 1643, 1807
BsaAI YACGTR 1 cut(s) 881
BsaJI CCNNGG 3 cut(s) 293, 1056, 1842
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 673, 1479
Bse1I ACTGG 3 cut(s) 100, 1570, 1723
Bse3DI GCAATG 4 cut(s) 417, 819, 873, 939
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 3 cut(s) 293, 1056, 1842
BseGI GGATG 2 cut(s) 404, 618
BseLI CCNNNNNNNGG 2 cut(s) 673, 1479
BseMI GCAATG 4 cut(s) 417, 819, 873, 939
BseMII CTCAG 5 cut(s) 396, 1214, 1408, 1481, 1565
BseNI ACTGG 3 cut(s) 100, 1570, 1723
BseRI GAGGAG 2 cut(s) 1079, 1640
BseXI GCAGC 3 cut(s) 1383, 1867, 1957
BseYI CCCAGC 1 cut(s) 601
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 4 cut(s) 290, 679, 1049, 1809
BsiHKAI GWGCWC 2 cut(s) 1395, 1980
BsiHKCI CYCGRG 2 cut(s) 673, 1638
BsiSI CCGG 1 cut(s) 548
BslFI GGGAC 2 cut(s) 780, 1860
BslI CCNNNNNNNGG 2 cut(s) 673, 1479
BsmAI GTCTC 3 cut(s) 758, 869, 1554
BsmBI CGTCTC 1 cut(s) 1554
BsmFI GGGAC 2 cut(s) 780, 1860
BsnI GGCC 4 cut(s) 290, 679, 1049, 1809
BsoBI CYCGRG 2 cut(s) 673, 1638
Bsp1286I GDGCHC 2 cut(s) 1395, 1980
Bsp143I GATC 9 cut(s) 384, 685, 996, 1006, 1132, 1354, 1408, 1456, 1618
BspACI CCGC 6 cut(s) 737, 828, 1002, 1040, 1592, 1867
BspANI GGCC 4 cut(s) 290, 679, 1049, 1809
BspCNI CTCAG 5 cut(s) 397, 1213, 1407, 1482, 1564
BspLI GGNNCC 3 cut(s) 291, 678, 1839
BspMAI CTGCAG 1 cut(s) 763
BspPI GGATC 2 cut(s) 1416, 1464
BspQI GCTCTTC 2 cut(s) 837, 1497
BsrBI CCGCTC 1 cut(s) 830
BsrDI GCAATG 4 cut(s) 417, 819, 873, 939
BsrI ACTGG 3 cut(s) 100, 1570, 1723
BssECI CCNNGG 3 cut(s) 293, 1056, 1842
BssMI GATC 9 cut(s) 384, 685, 996, 1006, 1132, 1354, 1408, 1456, 1618
BssSI CACGAG 2 cut(s) 979, 1184
BssT1I CCWWGG 3 cut(s) 293, 1056, 1842
Bst2BI CACGAG 2 cut(s) 979, 1184
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 5 cut(s) 187, 430, 569, 592, 1999
Bst6I CTCTTC 6 cut(s) 151, 213, 293, 615, 837, 1497
BstAPI GCANNNNNTGC 2 cut(s) 10, 734
BstBAI YACGTR 1 cut(s) 881
BstC8I GCNNGC 1 cut(s) 1197
BstF5I GGATG 2 cut(s) 404, 618
BstH2I RGCGCY 1 cut(s) 1386
BstHHI GCGC 1 cut(s) 1385
BstKTI GATC 9 cut(s) 387, 688, 999, 1009, 1135, 1357, 1411, 1459, 1621
BstMAI GTCTC 3 cut(s) 758, 869, 1554
BstMBI GATC 9 cut(s) 384, 685, 996, 1006, 1132, 1354, 1408, 1456, 1618
BstMWI GCNNNNNNNGC 7 cut(s) 10, 734, 938, 1046, 1094, 1302, 1380
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 1 cut(s) 759
BstV1I GCAGC 3 cut(s) 1383, 1867, 1957
BstV2I GAAGAC 3 cut(s) 142, 540, 1697
BstX2I RGATCY 2 cut(s) 1354, 1618
BstYI RGATCY 2 cut(s) 1354, 1618
BsuRI GGCC 4 cut(s) 290, 679, 1049, 1809
BtgZI GCGATG 2 cut(s) 213, 1389
BtsCI GGATG 2 cut(s) 404, 618
BtsIMutI CAGTG 4 cut(s) 374, 1577, 1716, 1908
Cac8I GCNNGC 1 cut(s) 1197
CaiI CAGNNNCTG 1 cut(s) 1235
CfoI GCGC 1 cut(s) 1385
Cfr13I GGNCC 3 cut(s) 289, 677, 1808
CseI GACGC 1 cut(s) 1536
Csp6I GTAC 3 cut(s) 1588, 1756, 1954
CviAII CATG 5 cut(s) 553, 772, 853, 1475, 1540
CviQI GTAC 3 cut(s) 1588, 1756, 1954
DpnI GATC 9 cut(s) 386, 687, 998, 1008, 1134, 1356, 1410, 1458, 1620
DpnII GATC 9 cut(s) 384, 685, 996, 1006, 1132, 1354, 1408, 1456, 1618
DraI TTTAAA 2 cut(s) 58, 816
DrdI GACNNNNNNGTC 1 cut(s) 1997
DseDI GACNNNNNNGTC 1 cut(s) 1997
Eam1104I CTCTTC 6 cut(s) 151, 213, 293, 615, 837, 1497
EarI CTCTTC 6 cut(s) 151, 213, 293, 615, 837, 1497
Eco130I CCWWGG 3 cut(s) 293, 1056, 1842
Eco32I GATATC 1 cut(s) 1537
Eco47III AGCGCT 1 cut(s) 1384
Eco57I CTGAAG 1 cut(s) 1991
Eco88I CYCGRG 2 cut(s) 673, 1638
EcoO109I RGGNCCY 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 1537
EcoT14I CCWWGG 3 cut(s) 293, 1056, 1842
ErhI CCWWGG 3 cut(s) 293, 1056, 1842
Esp3I CGTCTC 1 cut(s) 1554
FaeI CATG 5 cut(s) 556, 775, 856, 1478, 1543
FalI AAGNNNNNCTT 5 cut(s) 29, 1816, 1848, 1964, 1996
FaqI GGGAC 2 cut(s) 780, 1860
FatI CATG 5 cut(s) 552, 771, 852, 1474, 1539
FauI CCCGC 1 cut(s) 1599
Fnu4HI GCNGC 4 cut(s) 1372, 1867, 1881, 1946
FokI GGATG 2 cut(s) 411, 625
Fsp4HI GCNGC 4 cut(s) 1372, 1867, 1881, 1946
FspBI CTAG 7 cut(s) 180, 294, 573, 639, 1562, 1763, 1949
GlaI GCGC 1 cut(s) 1384
GluI GCNGC 4 cut(s) 1372, 1867, 1881, 1946
GsaI CCCAGC 1 cut(s) 605
HaeII RGCGCY 1 cut(s) 1386
HaeIII GGCC 4 cut(s) 290, 679, 1049, 1809
HapII CCGG 1 cut(s) 548
HgaI GACGC 1 cut(s) 1536
HhaI GCGC 1 cut(s) 1385
Hin1II CATG 5 cut(s) 556, 775, 856, 1478, 1543
Hin6I GCGC 1 cut(s) 1383
HinP1I GCGC 1 cut(s) 1383
HindIII AAGCTT 3 cut(s) 77, 113, 1580
HinfI GANTC 5 cut(s) 524, 793, 1232, 1253, 1277
HpaII CCGG 1 cut(s) 548
HphI GGTGA 3 cut(s) 221, 792, 1016
Hpy166II GTNNAC 4 cut(s) 1342, 1567, 1750, 1758
Hpy188III TCNNGA 9 cut(s) 132, 563, 1130, 1358, 1622, 1724, 1763, 1774, 1824
Hpy8I GTNNAC 4 cut(s) 1342, 1567, 1750, 1758
Hpy99I CGWCG 1 cut(s) 1775
HpyAV CCTTC 7 cut(s) 58, 454, 622, 778, 1607, 1780, 1966
HpyCH4III ACNGT 5 cut(s) 187, 430, 569, 592, 1999
HpyCH4IV ACGT 3 cut(s) 139, 880, 1243
HpyCH4V TGCA 5 cut(s) 4, 374, 761, 866, 1988
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 734, 938, 1046, 1094, 1302, 1380
HpySE526I ACGT 3 cut(s) 139, 880, 1243
Hsp92II CATG 5 cut(s) 556, 775, 856, 1478, 1543
HspAI GCGC 1 cut(s) 1383
Kzo9I GATC 9 cut(s) 384, 685, 996, 1006, 1132, 1354, 1408, 1456, 1618
LguI GCTCTTC 2 cut(s) 837, 1497
LmnI GCTCC 5 cut(s) 265, 310, 856, 1390, 1975
Lsp1109I GCAGC 3 cut(s) 1383, 1867, 1957
LweI GCATC 2 cut(s) 1169, 1756
MaeI CTAG 7 cut(s) 180, 294, 573, 639, 1562, 1763, 1949
MaeII ACGT 3 cut(s) 139, 880, 1243
MaeIII GTNAC 1 cut(s) 754
MalI GATC 9 cut(s) 386, 687, 998, 1008, 1134, 1356, 1410, 1458, 1620
MbiI CCGCTC 1 cut(s) 830
MboI GATC 9 cut(s) 384, 685, 996, 1006, 1132, 1354, 1408, 1456, 1618
MflI RGATCY 2 cut(s) 1354, 1618
MhlI GDGCHC 2 cut(s) 1395, 1980
MlyI GAGTC 3 cut(s) 802, 1241, 1247
MmeI TCCRAC 3 cut(s) 231, 729, 1868
MroXI GAANNNNTTC 1 cut(s) 1926
MseI TTAA 8 cut(s) 57, 86, 146, 581, 815, 1052, 1071, 1662
MslI CAYNNNNRTG 1 cut(s) 1983
MspI CCGG 1 cut(s) 548
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 7 cut(s) 10, 734, 938, 1046, 1094, 1302, 1380
NdeII GATC 9 cut(s) 384, 685, 996, 1006, 1132, 1354, 1408, 1456, 1618
NlaIII CATG 5 cut(s) 556, 775, 856, 1478, 1543
NlaIV GGNNCC 3 cut(s) 291, 678, 1839
PciSI GCTCTTC 2 cut(s) 837, 1497
PdmI GAANNNNTTC 1 cut(s) 1926
PfeI GAWTC 2 cut(s) 524, 1277
PflFI GACNNNGTC 1 cut(s) 1678
PkrI GCNGC 4 cut(s) 1373, 1868, 1882, 1947
PleI GAGTC 3 cut(s) 801, 1240, 1247
PpsI GAGTC 3 cut(s) 801, 1240, 1247
Ppu21I YACGTR 1 cut(s) 881
Psp1406I AACGTT 1 cut(s) 1243
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 601
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 3 cut(s) 291, 678, 1839
PspPI GGNCC 3 cut(s) 289, 677, 1808
PstI CTGCAG 1 cut(s) 763
PstNI CAGNNNCTG 1 cut(s) 1235
PsuI RGATCY 2 cut(s) 1354, 1618
PsyI GACNNNGTC 1 cut(s) 1678
RsaI GTAC 3 cut(s) 1589, 1757, 1955
RsaNI GTAC 3 cut(s) 1588, 1756, 1954
RseI CAYNNNNRTG 1 cut(s) 1983
SapI GCTCTTC 2 cut(s) 837, 1497
SaqAI TTAA 8 cut(s) 57, 86, 146, 581, 815, 1052, 1071, 1662
SatI GCNGC 4 cut(s) 1372, 1867, 1881, 1946
Sau3AI GATC 9 cut(s) 384, 685, 996, 1006, 1132, 1354, 1408, 1456, 1618
Sau96I GGNCC 3 cut(s) 289, 677, 1808
SchI GAGTC 3 cut(s) 802, 1241, 1247
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 2 cut(s) 1395, 1980
SfaNI GCATC 2 cut(s) 1169, 1756
SfcI CTRYAG 1 cut(s) 759
SmiMI CAYNNNNRTG 1 cut(s) 1983
SmlI CTYRAG 7 cut(s) 116, 790, 960, 1300, 1583, 1622, 1822
SmoI CTYRAG 7 cut(s) 116, 790, 960, 1300, 1583, 1622, 1822
SsiI CCGC 6 cut(s) 737, 828, 1002, 1040, 1592, 1867
SspMI CTAG 7 cut(s) 180, 294, 573, 639, 1562, 1763, 1949
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 3 cut(s) 293, 1056, 1842
TaaI ACNGT 5 cut(s) 187, 430, 569, 592, 1999
TaiI ACGT 3 cut(s) 142, 883, 1246
TaqI TCGA 4 cut(s) 109, 131, 387, 1062
TauI GCSGC 1 cut(s) 1869
TfiI GAWTC 2 cut(s) 524, 1277
Tru1I TTAA 8 cut(s) 57, 86, 146, 581, 815, 1052, 1071, 1662
Tru9I TTAA 8 cut(s) 57, 86, 146, 581, 815, 1052, 1071, 1662
TscAI CASTG 4 cut(s) 381, 1577, 1723, 1908
TseI GCWGC 3 cut(s) 1371, 1880, 1945
TspDTI ATGAA 7 cut(s) 40, 62, 569, 824, 1130, 1547, 1589
TspGWI ACGGA 1 cut(s) 1114
TspRI CASTG 4 cut(s) 381, 1577, 1723, 1908
Tth111I GACNNNGTC 1 cut(s) 1678
XapI RAATTY 5 cut(s) 33, 235, 316, 1319, 1965
XbaI TCTAGA 1 cut(s) 1762
XmaJI CCTAGG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 1926
XspI CTAG 7 cut(s) 180, 294, 573, 639, 1562, 1763, 1949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.