Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010372

Physical Location & Seq

Genomic Coordinates Reverse (-)

195636 .. 204053

Gene Structure 8418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015613

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3432 bp

ATGTGCCTTGAAAGATCAAAATATGCATTAATTTGCAAGTTGCTCTTCTACATTGTCATGGTGATCTTGCAGCTTCATTCTACTGTTCCTCCAAGCTTGTTGGTATCCAATTCACAGCAAACTCAAAATCCCGCTGTCTTGTTTCCCCCGGCTAATCAGAGTGCGGCAGCTATTGTGTTTGGGGATGGGCCAGAAACACAACTCTATCCATTGACGAAGAGAAGATCAGAAGGAGCCATACCTATCGCAGCAAGTTATAGACTGATTGATGCAGTTGTGAGCAACTGCATTAGCAGCAATATACACAGGATATATGCTCTGACACAATTTAACTCGACTTCTCTTAATTCCCACATTTCCAGGGCTTATTCTGGACCAGGTTTTGGAAATGAGGGGTTTGTTGAAGTAATTGCAGCATATCAAAGCTCTGATAATAATGGATGGTTTCAGGGAACTGCTGATGCTGTTAGAAGATGCCTATGGGTGCTGGAAGAGTATCCAATGTCTGAGTTTTTGGTCCTTCCTGGTTACCATCTCTACAAAATGGACTACCAGGAACTCATCAAGGCCCATCGAAACAATAAGGCAGACATCACAGTTGCGGCATCAGTTGCTAGGAGAATTCATGATCCGGGTTTTGGCTTTTTAGATGTGAATTCTGAAAATCAAGTTCTAGAGTTCAGATTGAAGTTGGAGGGAGGGCCAATTGATAATCATTCAGCCAAAGGCTCAAGGAAATCCAACAATACTGCTCTAAGGAGCATCACAAGTATGGGAATCTATCTCATCAACAGATATGCATTGAAAAGGCTCCTAGAAGAACATTTTACCGGGGCAAATGACTTTAGAACTGAAGTGATTCCCGGTGCCATATCCATTGGAATGAAGATTCAAGCTTATGCATTTCATGGACACTGGGAGGACATGAGGAATATTGAAGCATTCTACCAAGCAAATATGCAAAGTACAAAGAGTACAGTCGTGGGATATAAATCGGTAACTTTTATAGGGGAAAAGGCTGAATGTCATAGTGTTTTGTTCATCTTTTGTGATAAAGAAAGTCCAGTCCACACTTTGCGTCGTTGTCTGCCTCCAACTCTTATAACTGATTCTGTAATAACAAATAGTGTAGTTGGAGATGGTTGCATTCTTAATGGTTGCAGGATCAAAGGTACAGTAATTGGTATGAGGACAAGAATCGGAAATGGAGCAATAATCGAGGATTCAGTGATCATGGGTTCAACTTTATATCAACCAAACGCAGAAGATAGTGAAAACAGGGAAGGCACGGACATTCCCATCGGAATTGGGGAAGATACTCAAATAAGGAAGGCTATTGTAGACAAGAATGCAAGGATTGGCAAGAATGTAGTGATCATTAACAAAGACAACGCCCAGGAAGGGGACAGAGAAACCGATGGCTGTGTCATTCGTGAGGGAATAGTAGTTGTTCTTCGAACAGAAGCAGCTCATCCCAAAGTTCCCAGCAAATCAACTCAAAACATTACAGTGGTAAACATGCAAGGATTACTTAATGCCTTCTCTTATCAAATTCGTTTGAAAACCGAAATTGCTCACAAGCTTCCCGTGACAAAAACTGGGCTCCTCTCCCAAAAGCTTGACCTGGTTTTTCCAAGAAGAAATTGCTTCAATGCCATTAGCTCAACAAGTGTTAATGGTGATGGAGAAGAAGAAGAAGAAAGACGTAATTTGGATTGGGAATTGGAGTTTCTTGGAGAGCTTGACAAGAAGACGAAAAACCAACCTACATCTAGGCTGCTTCAAGAAACTGAGGGCATGGATTGGTGTGTGAGGGCAAGAAAGACTGCTCTAAAGTCGATTGAAGCCAAGGGCTGGTCTCATAGAATGGAAGATATGATTACCAAAAAGAAGAAAAAGAAAAAGAACAAGAACAAACTGGTGACGAAGAACAAAATGAATAAGAAAAGCAAGCAAGTCGAAGAAGACTTTGATTCAGAGGAAGACTTTGATATGCAAGATATAGATGCATTAGGTGGTTCTACCGATTTAAGAAGAACTGTGAGTATGCTGGGAGGTGGGATGTTTGAAGAGCAAAAGGAGAAGACCATGCAAGATTTTGTTCAGAGGCTTTCCCAATTCTCAGGGCCATCTGATCGTAGGAAAGAAATCAACTTGAACAAAGCAATTGTTGAAGCACAAACTGCAGAAGAAGTATTGGAGGTTACTGCTGAGACAATCATGGCTGTGGGAAAAGGCTTGAGTCCCTCTCCCCTTTCTCCTTTGAACATTGCCACTGCTCTTCATCGAATTGCTAAGAACATGGAGAAAGTTTCGATGCTAGAGACACGTAGGTTGGCTTTTGCTCGTCAAAGAGAGATGTCTATGCTTGTAGGAATAGCAATGACAGCCTTACCAGAGTGTTCAGCTCAAGGTATTTCTAATATCTCGTGGGCATTGTCTAAGATAGGAGGTGAGCTGCTTTACTTGTCAGAAATGGATAGAGTTGCAGAGGTGGCCTTAACCAAGGTTGGGGAGTTTAATTCACAGAATGTGGCTAATATCGCTGGTGCTTTTGCTTCCATGAACCACTCTGCTTCTGATCTTTTTCCTGAGTTATCAAAGAGGGCATCAGTTATAATTCACACTTTCCAAGAGCAAGAGCTTGCTCAGGTTTTGTGGGCTTTTGCTTCTTTACACGAGTCTGCTGAACCTTTGCTGGAATCTTTAGATAATGTTTTCAAAGATGCAAACCAATTTATATGCTGCCCAAACAAAGAACAATCGAATCTCAACCGAGAAAATGGTGCGGACAACATAGGAGATCTTGACATCAATGGCATTGCACAAGCTCCGGTGCTCAGTTTCAGAAGGGATCAGCTTGGGAACATAGCGTGGTCTTATGCTGTTCTAGGACAAATGGACCGCAGTTTTTTTTCCCATGTGTGGAGGACTCTTTGCCAATTTGAAGAGCAAAAAATTTCAGAACAGTATAGGGAGGATATCATGTTTGCTTCTCAAGTTCATCTAGTGAACCAGTGCTTGAAGCTTGAGTACCCACATCTTCATTTATCTTTAAAGAGAGATCTTGAGGAGAAAATAGCACGTGCCGGTAAAACTAAGAGATTTAATCAGAAAATGACTTCATCTTTTCAAAAGGAGGTCGCTCATCTTCTTGTTAGCACTGGCCTTGATTGGATCAAAGAGTATGATGTGGACGGGTACACTGTGGACGCTGTTGTAATTGATAAGAAGATTGCTATGGAGATTGATGGGCCAACTCATTTCTCAAGAAATACTGGGGTTCCCTTGGGACACACTATACTCAAACGCCGCTACATAACTGCAGCTGGTTGGAAAGTTGTGTCTTTGTCTCATCAAGAGTGGGAAGAACTTGAAGGTGGGTTTGAGCAGCTAGACTACCTAAGAGAAATTTTGAAGGAGCCCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RAP

Protein Analysis

1144

Amino Acids

128.05

Weight (kDa)

6.43

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	57 - 324	2.5e-36	Nucleotidyl transferase
LbH_GLGC	PF25247	361 - 487	2.5e-44	GLGC left-handed parallel beta-helix domain
RESC6	PF26188	791 - 893	1e-05	RNA-editing substrate-binding complex 6 protein
MTES_1575	PF18741	1044 - 1123	2.5e-07	REase_MTES_1575
RAP	PF08373	1082 - 1137	1e-15	RAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31890
fragaria_vesca	FvH4_1g00100
malus_domestica	MD11G1156300.v1.1
prunus_persica	Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1
pyrus_communis	pycom11g12690
rosa_chinensis	RchiOBHm_Chr2g0084391
rosa_laevigata	RLG00000015613
rosa_multiflora	Rmu_sc0009404.1_g000009
rosa_roxburghii	Rroxscaffold_2G00156140
rosa_rugosa	Rorug01G0453000 Rorug01G0453100 Rorug01G0453200 Rorug01G0453300
rosa_samantha	Rh2AG001400 Rh2BG001300 Rh2CG001300 Rh2DG001500
rosa_wichuraiana	Rw2G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1103, 2618
AccB1I	GGYRCC	1 cut(s)	866
AccB7I	CCANNNNNTGG	2 cut(s)	383, 1854
AccI	GTMKAC	1 cut(s)	1341
AciI	CCGC	6 cut(s)	132, 164, 602, 2789, 2905, 3313
AclWI	GGATC	4 cut(s)	623, 1172, 2862, 3185
AcsI	RAATTY	5 cut(s)	621, 655, 1551, 2958, 3411
AcuI	CTGAAG	1 cut(s)	873
AcvI	CACGTG	1 cut(s)	3086
AfaI	GTAC	5 cut(s)	967, 976, 1174, 3035, 3203
AfiI	CCNNNNNNNGG	7 cut(s)	383, 638, 1401, 1402, 1854, 2511, 2925
AflIII	ACRYGT	1 cut(s)	2327
AjnI	CCWGG	6 cut(s)	359, 376, 523, 552, 1395, 1623
Alw21I	GWGCWC	1 cut(s)	2841
Alw26I	GTCTC	4 cut(s)	1863, 2207, 2318, 3357
AlwI	GGATC	4 cut(s)	623, 1172, 2862, 3185
AoxI	GGCC	7 cut(s)	188, 567, 701, 2126, 2496, 3166, 3254
ApoI	RAATTY	5 cut(s)	621, 655, 1551, 2958, 3411
AseI	ATTAAT	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	858
AspS9I	GGNCC	8 cut(s)	188, 374, 517, 568, 701, 2126, 2902, 3254
AsuC2I	CCSGG	4 cut(s)	149, 633, 832, 864
AsuHPI	GGTGA	4 cut(s)	73, 1691, 1933, 2465
AsuII	TTCGAA	1 cut(s)	1456
AvaII	GGWCC	3 cut(s)	374, 517, 2902
BanI	GGYRCC	1 cut(s)	866
BanII	GRGCYC	2 cut(s)	1605, 3426
BarI	GAAGNNNNNNTAC	6 cut(s)	222, 254, 1437, 1469, 3017, 3049
BauI	CACGAG	2 cut(s)	2428, 2678
BbrPI	CACGTG	1 cut(s)	3086
BbsI	GAAGAC	4 cut(s)	1757, 1971, 1989, 2090
Bbv12I	GWGCWC	1 cut(s)	2841
BcgI	CGANNNNNNTGC	2 cut(s)	1939, 1973
BciT130I	CCWGG	6 cut(s)	361, 378, 525, 554, 1397, 1625
BciVI	GTATCC	2 cut(s)	115, 507
BclI	TGATCA	2 cut(s)	1230, 1374
BcnI	CCSGG	4 cut(s)	149, 633, 832, 864
BcoDI	GTCTC	4 cut(s)	1863, 2207, 2318, 3357
BfaI	CTAG	8 cut(s)	615, 674, 815, 1773, 2321, 2891, 3008, 3395
BfmI	CTRYAG	3 cut(s)	2184, 3324, 3428
BfuI	GTATCC	2 cut(s)	115, 507
BglII	AGATCT	2 cut(s)	2803, 3064
Bme18I	GGWCC	3 cut(s)	374, 517, 2902
BmgT120I	GGNCC	8 cut(s)	188, 374, 517, 568, 701, 2126, 2902, 3254
BmiI	GGNNCC	6 cut(s)	235, 812, 868, 1604, 3285, 3423
BmrI	ACTGGG	3 cut(s)	925, 1608, 3288
BmsI	GCATC	9 cut(s)	259, 451, 464, 614, 771, 1996, 2307, 2618, 2716
BmuI	ACTGGG	3 cut(s)	925, 1608, 3288
BpiI	GAAGAC	4 cut(s)	1757, 1971, 1989, 2090
BplI	GAGNNNNNCTC	2 cut(s)	2233, 2265
Bpu10I	CCTNAGC	1 cut(s)	2649
Bpu14I	TTCGAA	1 cut(s)	1456
BpuEI	CTTGAG	7 cut(s)	715, 2260, 2394, 2982, 3050, 3089, 3253
BpuMI	CCSGG	4 cut(s)	149, 633, 832, 864
BsaAI	YACGTR	2 cut(s)	2330, 3086
BsaBI	GATNNNNATC	1 cut(s)	991
BsaI	GGTCTC	1 cut(s)	1863
BsaJI	CCNNGG	7 cut(s)	147, 360, 831, 1395, 1848, 2505, 3288
BsaWI	WCCGGW	1 cut(s)	2833
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	7 cut(s)	383, 638, 1401, 1402, 1854, 2511, 2925
Bse118I	RCCGGY	1 cut(s)	3089
Bse1I	ACTGG	7 cut(s)	920, 1064, 1603, 1923, 3016, 3169, 3283
Bse3DI	GCAATG	3 cut(s)	2268, 2388, 2820
Bse8I	GATNNNNATC	1 cut(s)	991
BseBI	CCWGG	6 cut(s)	361, 378, 525, 554, 1397, 1625
BseDI	CCNNGG	7 cut(s)	147, 360, 831, 1395, 1848, 2505, 3288
BseGI	GGATG	4 cut(s)	190, 446, 1471, 2067
BseJI	GATNNNNATC	1 cut(s)	991
BseLI	CCNNNNNNNGG	7 cut(s)	383, 638, 1401, 1402, 1854, 2511, 2925
BseMI	GCAATG	3 cut(s)	2268, 2388, 2820
BseMII	CTCAG	7 cut(s)	498, 1782, 2136, 2202, 2583, 2663, 2854
BseNI	ACTGG	7 cut(s)	920, 1064, 1603, 1923, 3016, 3169, 3283
BseRI	GAGGAG	2 cut(s)	1595, 3086
BseYI	CCCAGC	2 cut(s)	1484, 2050
BshFI	GGCC	7 cut(s)	190, 569, 703, 2128, 2498, 3168, 3256
BshNI	GGYRCC	1 cut(s)	866
BsiHKAI	GWGCWC	1 cut(s)	2841
BsiSI	CCGG	6 cut(s)	149, 632, 831, 864, 2834, 3090
BslFI	GGGAC	3 cut(s)	1418, 2229, 3306
BslI	CCNNNNNNNGG	7 cut(s)	383, 638, 1401, 1402, 1854, 2511, 2925
BsmAI	GTCTC	4 cut(s)	1863, 2207, 2318, 3357
BsmFI	GGGAC	3 cut(s)	1418, 2229, 3306
BsmI	GAATGC	3 cut(s)	941, 1146, 1354
BsnI	GGCC	7 cut(s)	190, 569, 703, 2128, 2498, 3168, 3256
Bso31I	GGTCTC	1 cut(s)	1863
Bsp119I	TTCGAA	1 cut(s)	1456
Bsp1286I	GDGCHC	3 cut(s)	1605, 2841, 3426
BspACI	CCGC	6 cut(s)	132, 164, 602, 2789, 2905, 3313
BspANI	GGCC	7 cut(s)	190, 569, 703, 2128, 2498, 3168, 3256
BspCNI	CTCAG	7 cut(s)	499, 1783, 2135, 2203, 2584, 2662, 2853
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	6 cut(s)	235, 812, 868, 1604, 3285, 3423
BspMAI	CTGCAG	2 cut(s)	2188, 3328
BspPI	GGATC	4 cut(s)	623, 1172, 2862, 3185
BspQI	GCTCTTC	4 cut(s)	50, 2064, 2286, 2943
BspT104I	TTCGAA	1 cut(s)	1456
BspT107I	GGYRCC	1 cut(s)	866
BspTNI	GGTCTC	1 cut(s)	1863
BsrDI	GCAATG	3 cut(s)	2268, 2388, 2820
BsrFI	RCCGGY	1 cut(s)	3089
BsrI	ACTGG	7 cut(s)	920, 1064, 1603, 1923, 3016, 3169, 3283
BssAI	RCCGGY	1 cut(s)	3089
BssECI	CCNNGG	7 cut(s)	147, 360, 831, 1395, 1848, 2505, 3288
BssSI	CACGAG	2 cut(s)	2428, 2678
BssT1I	CCWWGG	3 cut(s)	1848, 2505, 3288
Bst2BI	CACGAG	2 cut(s)	2428, 2678
Bst2UI	CCWGG	6 cut(s)	361, 378, 525, 554, 1397, 1625
Bst4CI	ACNGT	8 cut(s)	85, 598, 979, 1177, 1510, 2041, 2970, 3208
Bst6I	CTCTTC	6 cut(s)	50, 212, 486, 2064, 2286, 2943
BstAPI	GCANNNNNTGC	2 cut(s)	611, 2183
BstBAI	YACGTR	2 cut(s)	2330, 3086
BstBI	TTCGAA	1 cut(s)	1456
BstC8I	GCNNGC	2 cut(s)	1952, 2646
BstEII	GGTNACC	1 cut(s)	527
BstF5I	GGATG	4 cut(s)	190, 446, 1471, 2067
BstMAI	GTCTC	4 cut(s)	1863, 2207, 2318, 3357
BstMWI	GCNNNNNNNGC	6 cut(s)	294, 611, 2183, 2387, 2495, 2543
BstNI	CCWGG	6 cut(s)	361, 378, 525, 554, 1397, 1625
BstNSI	RCATGY	1 cut(s)	1522
BstPI	GGTNACC	1 cut(s)	527
BstSFI	CTRYAG	3 cut(s)	2184, 3324, 3428
BstV2I	GAAGAC	4 cut(s)	1757, 1971, 1989, 2090
BstX2I	RGATCY	2 cut(s)	2803, 3064
BstYI	RGATCY	2 cut(s)	2803, 3064
BsuI	GTATCC	2 cut(s)	115, 507
BsuRI	GGCC	7 cut(s)	190, 569, 703, 2128, 2498, 3168, 3256
BtsCI	GGATG	4 cut(s)	190, 446, 1471, 2067
BtsI	GCAGTG	1 cut(s)	2274
BtsIMutI	CAGTG	7 cut(s)	913, 1233, 1515, 2274, 3023, 3162, 3204
Cac8I	GCNNGC	2 cut(s)	1952, 2646
CciI	TCATGA	1 cut(s)	625
Cfr10I	RCCGGY	1 cut(s)	3089
Cfr13I	GGNCC	8 cut(s)	188, 374, 517, 568, 701, 2126, 2902, 3254
CseI	GACGC	2 cut(s)	1067, 3221
CsiI	ACCWGGT	2 cut(s)	376, 1623
Csp6I	GTAC	5 cut(s)	966, 975, 1173, 3034, 3202
CviQI	GTAC	5 cut(s)	966, 975, 1173, 3034, 3202
DraI	TTTAAA	1 cut(s)	3057
Eam1104I	CTCTTC	6 cut(s)	50, 212, 486, 2064, 2286, 2943
EarI	CTCTTC	6 cut(s)	50, 212, 486, 2064, 2286, 2943
Eco130I	CCWWGG	3 cut(s)	1848, 2505, 3288
Eco24I	GRGCYC	2 cut(s)	1605, 3426
Eco31I	GGTCTC	1 cut(s)	1863
Eco32I	GATATC	1 cut(s)	2983
Eco47I	GGWCC	3 cut(s)	374, 517, 2902
Eco57I	CTGAAG	1 cut(s)	873
Eco72I	CACGTG	1 cut(s)	3086
Eco91I	GGTNACC	1 cut(s)	527
EcoO65I	GGTNACC	1 cut(s)	527
EcoRI	GAATTC	2 cut(s)	621, 655
EcoRII	CCWGG	6 cut(s)	359, 376, 523, 552, 1395, 1623
EcoRV	GATATC	1 cut(s)	2983
EcoT14I	CCWWGG	3 cut(s)	1848, 2505, 3288
EcoT22I	ATGCAT	4 cut(s)	28, 802, 904, 2011
EcoT38I	GRGCYC	2 cut(s)	1605, 3426
ErhI	CCWWGG	3 cut(s)	1848, 2505, 3288
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 1515, 1547
FaqI	GGGAC	3 cut(s)	1418, 2229, 3306
FauI	CCCGC	1 cut(s)	139
FbaI	TGATCA	2 cut(s)	1230, 1374
FblI	GTMKAC	1 cut(s)	1341
FokI	GGATG	4 cut(s)	197, 453, 1458, 2074
FriOI	GRGCYC	2 cut(s)	1605, 3426
FspBI	CTAG	8 cut(s)	615, 674, 815, 1773, 2321, 2891, 3008, 3395
GsaI	CCCAGC	2 cut(s)	1488, 2054
HaeIII	GGCC	7 cut(s)	190, 569, 703, 2128, 2498, 3168, 3256
HapII	CCGG	6 cut(s)	149, 632, 831, 864, 2834, 3090
HgaI	GACGC	2 cut(s)	1067, 3221
HindIII	AAGCTT	5 cut(s)	94, 894, 1580, 1616, 3026
HpaII	CCGG	6 cut(s)	149, 632, 831, 864, 2834, 3090
HphI	GGTGA	4 cut(s)	73, 1691, 1933, 2465
Hpy166II	GTNNAC	7 cut(s)	1069, 1342, 1516, 3013, 3196, 3204, 3211
Hpy8I	GTNNAC	7 cut(s)	1069, 1342, 1516, 3013, 3196, 3204, 3211
Hpy99I	CGWCG	1 cut(s)	1083
HpyAV	CCTTC	9 cut(s)	224, 530, 1277, 1324, 1394, 1549, 2844, 3371, 3412
HpyCH4III	ACNGT	8 cut(s)	85, 598, 979, 1177, 1510, 2041, 2970, 3208
HpyCH4IV	ACGT	3 cut(s)	1705, 2329, 3085
HpyF10VI	GCNNNNNNNGC	6 cut(s)	294, 611, 2183, 2387, 2495, 2543
HpySE526I	ACGT	3 cut(s)	1705, 2329, 3085
Ksp22I	TGATCA	2 cut(s)	1230, 1374
LguI	GCTCTTC	4 cut(s)	50, 2064, 2286, 2943
LmnI	GCTCC	7 cut(s)	233, 759, 816, 1208, 1608, 2836, 3421
LweI	GCATC	9 cut(s)	259, 451, 464, 614, 771, 1996, 2307, 2618, 2716
MabI	ACCWGGT	2 cut(s)	376, 1623
MaeI	CTAG	8 cut(s)	615, 674, 815, 1773, 2321, 2891, 3008, 3395
MaeII	ACGT	3 cut(s)	1705, 2329, 3085
MaeIII	GTNAC	5 cut(s)	527, 997, 1588, 1921, 2203
MfeI	CAATTG	2 cut(s)	705, 2166
MflI	RGATCY	2 cut(s)	2803, 3064
MhlI	GDGCHC	3 cut(s)	1605, 2841, 3426
MlyI	GAGTC	3 cut(s)	2251, 2690, 2926
MmeI	TCCRAC	5 cut(s)	672, 765, 1114, 1118, 3314
Mph1103I	ATGCAT	4 cut(s)	28, 802, 904, 2011
MroXI	GAANNNNTTC	1 cut(s)	858
MslI	CAYNNNNRTG	5 cut(s)	56, 770, 881, 1508, 2225
MspA1I	CMGCKG	2 cut(s)	134, 3329
MspI	CCGG	6 cut(s)	149, 632, 831, 864, 2834, 3090
MunI	CAATTG	2 cut(s)	705, 2166
Mva1269I	GAATGC	3 cut(s)	941, 1146, 1354
MvaI	CCWGG	6 cut(s)	361, 378, 525, 554, 1397, 1625
MwoI	GCNNNNNNNGC	6 cut(s)	294, 611, 2183, 2387, 2495, 2543
NciI	CCSGG	4 cut(s)	149, 633, 832, 864
NlaIV	GGNNCC	6 cut(s)	235, 812, 868, 1604, 3285, 3423
NmuCI	GTSAC	2 cut(s)	1588, 1921
NsiI	ATGCAT	4 cut(s)	28, 802, 904, 2011
NspI	RCATGY	1 cut(s)	1522
NspV	TTCGAA	1 cut(s)	1456
PagI	TCATGA	1 cut(s)	625
PciSI	GCTCTTC	4 cut(s)	50, 2064, 2286, 2943
PctI	GAATGC	3 cut(s)	941, 1146, 1354
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	9 cut(s)	777, 859, 889, 1109, 1197, 1223, 1973, 2702, 2767
PflMI	CCANNNNNTGG	2 cut(s)	383, 1854
PleI	GAGTC	3 cut(s)	2250, 2689, 2926
PmaCI	CACGTG	1 cut(s)	3086
PmlI	CACGTG	1 cut(s)	3086
PpsI	GAGTC	3 cut(s)	2250, 2689, 2926
Ppu21I	YACGTR	2 cut(s)	2330, 3086
PshBI	ATTAAT	1 cut(s)	29
PsiI	TTATAA	2 cut(s)	1103, 2618
Psp6I	CCWGG	6 cut(s)	359, 376, 523, 552, 1395, 1623
PspCI	CACGTG	1 cut(s)	3086
PspEI	GGTNACC	1 cut(s)	527
PspFI	CCCAGC	2 cut(s)	1484, 2050
PspGI	CCWGG	6 cut(s)	359, 376, 523, 552, 1395, 1623
PspN4I	GGNNCC	6 cut(s)	235, 812, 868, 1604, 3285, 3423
PspPI	GGNCC	8 cut(s)	188, 374, 517, 568, 701, 2126, 2902, 3254
PstI	CTGCAG	2 cut(s)	2188, 3328
PsuI	RGATCY	2 cut(s)	2803, 3064
PvuII	CAGCTG	1 cut(s)	3329
RsaI	GTAC	5 cut(s)	967, 976, 1174, 3035, 3203
RsaNI	GTAC	5 cut(s)	966, 975, 1173, 3034, 3202
RseI	CAYNNNNRTG	5 cut(s)	56, 770, 881, 1508, 2225
SapI	GCTCTTC	4 cut(s)	50, 2064, 2286, 2943
Sau96I	GGNCC	8 cut(s)	188, 374, 517, 568, 701, 2126, 2902, 3254
SchI	GAGTC	3 cut(s)	2251, 2690, 2926
SduI	GDGCHC	3 cut(s)	1605, 2841, 3426
SexAI	ACCWGGT	2 cut(s)	376, 1623
SfaNI	GCATC	9 cut(s)	259, 451, 464, 614, 771, 1996, 2307, 2618, 2716
SfcI	CTRYAG	3 cut(s)	2184, 3324, 3428
SfuI	TTCGAA	1 cut(s)	1456
SinI	GGWCC	3 cut(s)	374, 517, 2902
SmiMI	CAYNNNNRTG	5 cut(s)	56, 770, 881, 1508, 2225
SmlI	CTYRAG	7 cut(s)	730, 2239, 2409, 2997, 3029, 3068, 3268
SmoI	CTYRAG	7 cut(s)	730, 2239, 2409, 2997, 3029, 3068, 3268
SsiI	CCGC	6 cut(s)	132, 164, 602, 2789, 2905, 3313
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	8 cut(s)	615, 674, 815, 1773, 2321, 2891, 3008, 3395
StyI	CCWWGG	3 cut(s)	1848, 2505, 3288
TaaI	ACNGT	8 cut(s)	85, 598, 979, 1177, 1510, 2041, 2970, 3208
TaiI	ACGT	3 cut(s)	1708, 2332, 3088
TaqI	TCGA	9 cut(s)	335, 574, 1218, 1456, 1838, 1959, 2287, 2315, 2765
TatI	WGTACW	2 cut(s)	965, 974
TauI	GCSGC	3 cut(s)	167, 605, 3315
TfiI	GAWTC	9 cut(s)	777, 859, 889, 1109, 1197, 1223, 1973, 2702, 2767
TscAI	CASTG	7 cut(s)	920, 1233, 1515, 2281, 3023, 3169, 3211
TseFI	GTSAC	2 cut(s)	1588, 1921
Tsp45I	GTSAC	2 cut(s)	1588, 1921
TspGWI	ACGGA	1 cut(s)	1304
TspRI	CASTG	7 cut(s)	920, 1233, 1515, 2281, 3023, 3169, 3211
Van91I	CCANNNNNTGG	2 cut(s)	383, 1854
VpaK11BI	GGWCC	3 cut(s)	374, 517, 2902
VspI	ATTAAT	1 cut(s)	29
XapI	RAATTY	5 cut(s)	621, 655, 1551, 2958, 3411
XbaI	TCTAGA	1 cut(s)	673
XceI	RCATGY	1 cut(s)	1522
XmiI	GTMKAC	1 cut(s)	1341
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	8 cut(s)	615, 674, 815, 1773, 2321, 2891, 3008, 3395
Zsp2I	ATGCAT	4 cut(s)	28, 802, 904, 2011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.