Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010372

Physical Location & Seq

Genomic Coordinates Reverse (-)

174022 .. 184867

Gene Structure 10846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG001300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3678 bp

ATGGCTTCTGCTGCTGCTTCGGCTTCAAGCACTGGATGCTTAGTTCGGTCACGCCTCCCACTCGGCGAATGTCAGCATCATCGTAATAACGGGATTGTACTGCTTCCCCAGTTACCCAAACCCCTCATCTCTCTTTCTTCTTCTTCTTCTTCCAAAGCTGCAATTCCAACTGCAACTGCAAGTGAGAGGAAGGAGCGTTCCTCTTTTGCTCAAACTGCGGCTGTTCGGCATCTCGTGGGTTCCGTTACCACAGCTCACGGCCTTCGTTTCGCAGTGGTTGTAGCACGGTTTAATGAGATTATCACAAAGCCACTGCTAGAGGGAGCTTTAGCTACTTTCAACAATTATTCTGTTCAAGAAGAGGACATTGATGTGGTATGGGTTCCTGGTAGCTTTGAAATTGGTGTAGTTGCACAGAGGCTTGGAGGTTCGGGGAGATATCATGCAGTTTTATGCATTGGAGCTGTGATAAGAGGTGATACAACCCACTATGATGCTGTTGCTAATTCAGCTGCATCTGGAGTGCTTTCAGCTGGTTTAAAATCAGGTGTTCCATGCATATTTGGTGTCTTAACTTGTGATAATATGGAGCAGGCTTTAAATCGAGCTGGTGGTAAATCTGGAAATAAGGGTGCAGAGACTGCCTTGACAGCTATTGAGATGGCATCTTTGTTTGTGCACCAATTGAAGGCTTATTCTGGACTAGGTTTTGGAAATGAGGGGTTTGTTGAAGTAATTGCAGCATATCAAAGCTCTGATAATAATGGATGGTTTCAGGGAACTGCTGATGCTGTTAGAAGATGCCTATGGGTGCTGGAAGAGTATCCAATGTCTGAGTTTTTGGTCCTTCCTGGTTACCATCTCTACAAAATGGACTACCAGGAACTCATCAAGGCCCATCGAAACAATAAGGCAGACATCACAGTTGCAGCATCAGTTGCTAGGAGAATTCATGATCCGGGTTTTGGCTTTTTAGATGTGAATTCTGAAAATAAAGTTCTAGAGTTCAGATTGAAGTTGGAGGGAGGACCAATTGATAATCATTCAGCCAAAGGCTCAAGGAAATCCAACGATACTGCTCTAAGTAGCATCACAAGTATGGGAATCTATCTCATCAACAGAGATGCATTGAAAAGGCTCCTAGAAGAACATTTTCCCGAGGCAAATGACTTTAGAACTGAAGTGATTCCCGGTGCCATATCCATTGGAATGAAGATTCAAGCTTATGCATTTCATGGATACTGGGAGGACATGAGGAATATTGAAGCATTCTACCAAGCAAATATGCAAAGTACAAAGAGTACAGACGTGGGATATAACTTTTGTGATAAAGAAAGTCCAGTCCACACTTTGCGTCGTTGTCTGCCTCCAACTCTTATAACTGATTCTGTAATAACAAATAGTGTAGTTGGAGATGGTTGCATTCTTAATGGTTGCAGGATCAAAGGTACAGTAATTGGTATGAGGACAAGAATCGGAAATGGGTCAATAATCGAGGATTCAGTGATCATGGGTTCAACTTTATATCAAGACATCTATTCACAGCCAAACGCAGAAGATAGTGAAAACAGGAAAGGCACAGACATTCCCATCGGAATTGGGGAAGATACTCAAATAAGGAAGGCTATTGTAGACAAGAATGCAAGGATTGGCAAGAATGTAGTGATCATTAACAAAGACAATGCCCAGGAAGGGGACAGAGAAACCGATGGCTATGTCATTCGTCAGGGAATAGTAGTTGTTCTTCGAAGTGCTGTAAACATGCAAGGATTACTTAATGCCTTCTCTTATCAAATTCGTTTGAAACCCGAAATTGCTCACAAGCTTCCCGTGACAAAAACTGGGCTCCTCTCCCAAAAACTTGACCTGGTTTTTCCAAGAAGAAATTGCTTCAATGCCTCAACAAGTGTTGATGGTGATGGAGAAGAAGAAGAAGAAGAAGAAGAAAGAGGTAATTTGGATTGGGAATTGGAGTTTCTTGGAGAGCTTGACAAGAAGACGAAAAACCAACCTACATCTAGGCTGCTTCAAGAAACTGAGGGCATGGATTGGTGTGTGAGGGCAAGAAAGACTGCTCTAAAGTCGATTGAAGCAAAGGGCTGGTCTCATAGAATGGAAGATATGATTACCAAAAAGAAGAAAAAAAAAAAGAACAAGAAGAAACTGGTGACGAAAAACAAAATGAATAAGAAAAGCAAGCAAGTCGAAGAAGACTTTGATTCAGAGGAAGACTTTGATATGCAAGATATAGATGCATTAGGTGGTTCTACCGATTTAAGAACAACTGTGAGTATGCTGGGAAGTGGGATGTTTGAAGAGAAAAAGGAGAAGACCATGCAAGATTTTGTTCAGAGGCTTTCCCAATTCTCAGGGCCATCTGATCGTAAGAAAGAAATCAACTTGAACAAAGCAATTGTTGAAGCACAAACTGCAGAAGAAGTATGGGAGGTTACTGCTGAGACAATCATGGCTGTGGGAAAAGGCTTGAGTCCCTCTCCCCTTTCTCCTTTGAACATTGCCACTGCTCTTCATCGAATTGCTAAGAACATGGAGAAAGTTTCGATGCTAGAGACACGTAGGTTGGCTTTTGCTCGTCAAAGAGAGATGTCTATGCTTGTAGGAATAGCAATGACAGCCTTACCAGAGTGTTCAGCTCAAGGTATTTCTAATATCTCGTGGGCATTGTCTAAGATAGGAGGTGAGCTGCTTTACTTGTCAGAAATGGATAGAGTTGCAGAGGTGGCCTTAACCAAGGTTGGGGAGTTTAATTCACAGAATGTGGCTAATATCGCTGGTGCTTTTGCTTCCATGAAGCACTCTGCTTCTGATCTTTTTCCTGAGTTATCAAAGAGGGCATCAGTTATAATTCACACTTTCCAAGAGCAAGAGCTTGCTCAGGTTTTGTGGGCTTTTGCTTCTTTACATGAGTCTGCTGAACCTTTGCTTGAATCTTTAGATAATGTTTTCAAAGATGCAAACCAATTTATATGCTGCCCAAACAAAGAACAATCAAATTTCAACCGAGAAAATGGTGTGGACAACATAGGAGATCTTGACATCAATGGCATTGCACACGCTCCTGTGCTCAGTTTCAGAAGGGATCAGCTTGGGAACATAGCGTGGTCTTATGCTGTTCTAGGACAAATGGACCGCAGTTTTTTTTCCCATGTGTGGAGGACTCTTTGCCAATTTGAAGAGCAAAAAATTTCAGAACAGTATAGGGAGGATATCATGTTTGCTTCTCAAGTTCATCTAGTGAACCAGTGCTTGAAGCTTGAGTACCCACATCTTCATTTATCTTTAAAGAGAGATCTTGAGGAGAAAATAGCACGTGCCGGTAAAACTAAGAGATTTAATCAGAAAATGACTTCCTCTTTTCAAAAGGAGGTCGCTCATCTTCTTGTTAGCACTGGCCTTGATTGGATCAAAGAGTATGATGTGGACGGGTACACTGTGGATGCTGTTGTAATTGATAAGAAGATTGCTATGGAGATTGATGGCCCAACTCATTTCTCAAGAAATACTGGGGTTCCCTTGGGACACACTATACTCAAACGCCGCTACATAACTGCTGCTGGTTGGAAAGTTGTGTCTTTGTCTCATCAAGAGTGGGAAGAACTTGAAGGTGGGTTTGAGCAGCTAGACTACCTAAGAGAAATTTTGAAGGAGCACCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901259 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RAP

Protein Analysis

1225

Amino Acids

135.97

Weight (kDa)

6.16

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DMRL_synthase	PF00885	87 - 224	3e-49	6,7-dimethyl-8-ribityllumazine synthase
NTP_transferase	PF00483	236 - 433	2.7e-23	Nucleotidyl transferase
LbH_GLGC	PF25247	453 - 589	1.9e-43	GLGC left-handed parallel beta-helix domain
MTES_1575	PF18741	1126 - 1205	2.8e-07	REase_MTES_1575
RAP	PF08373	1164 - 1219	1.1e-15	RAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31890
fragaria_vesca	FvH4_1g00100
malus_domestica	MD11G1156300.v1.1
prunus_persica	Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1 Prupe.6G118500_v2.0.a1
pyrus_communis	pycom11g12690
rosa_chinensis	RchiOBHm_Chr2g0084391
rosa_laevigata	RLG00000015613
rosa_multiflora	Rmu_sc0009404.1_g000009
rosa_roxburghii	Rroxscaffold_2G00156140
rosa_rugosa	Rorug01G0453000 Rorug01G0453100 Rorug01G0453200 Rorug01G0453300
rosa_samantha	Rh2AG001400 Rh2BG001300 Rh2CG001300 Rh2DG001500
rosa_wichuraiana	Rw2G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1379, 2864
AccB1I	GGYRCC	1 cut(s)	1193
AccI	GTMKAC	1 cut(s)	1632
AciI	CCGC	3 cut(s)	218, 3151, 3559
AclWI	GGATC	4 cut(s)	950, 1448, 3108, 3431
AcsI	RAATTY	6 cut(s)	948, 982, 1794, 3013, 3204, 3657
AcuI	CTGAAG	1 cut(s)	1200
AcvI	CACGTG	1 cut(s)	3332
AfaI	GTAC	6 cut(s)	99, 1294, 1303, 1450, 3281, 3449
AfiI	CCNNNNNNNGG	6 cut(s)	688, 965, 1692, 1693, 2757, 3171
AflIII	ACRYGT	1 cut(s)	2573
AjiI	CACGTC	1 cut(s)	1309
AjnI	CCWGG	5 cut(s)	385, 850, 879, 1686, 1866
AloI	GAACNNNNNNTCC	4 cut(s)	27, 59, 181, 213
Alw21I	GWGCWC	3 cut(s)	681, 3087, 3672
Alw26I	GTCTC	5 cut(s)	632, 2109, 2453, 2564, 3603
Alw44I	GTGCAC	1 cut(s)	677
AlwI	GGATC	4 cut(s)	950, 1448, 3108, 3431
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	1157
AoxI	GGCC	6 cut(s)	259, 894, 2372, 2742, 3412, 3499
ApaLI	GTGCAC	1 cut(s)	677
ApoI	RAATTY	6 cut(s)	948, 982, 1794, 3013, 3204, 3657
ArsI	GACNNNNNNTTYG	2 cut(s)	2087, 2119
Asp700I	GAANNNNTTC	2 cut(s)	1152, 1185
AspS9I	GGNCC	6 cut(s)	844, 895, 1028, 2372, 3148, 3500
AsuC2I	CCSGG	2 cut(s)	960, 1191
AsuHPI	GGTGA	4 cut(s)	488, 1928, 2179, 2711
AsuII	TTCGAA	1 cut(s)	1747
AvaI	CYCGRG	1 cut(s)	1157
AvaII	GGWCC	3 cut(s)	844, 1028, 3148
BaeGI	GKGCMC	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	1193
BanII	GRGCYC	1 cut(s)	1848
BarI	GAAGNNNNNNTAC	4 cut(s)	1728, 1760, 3263, 3295
BauI	CACGAG	2 cut(s)	233, 2674
BbrPI	CACGTG	1 cut(s)	3332
BbsI	GAAGAC	4 cut(s)	2003, 2217, 2235, 2336
Bbv12I	GWGCWC	3 cut(s)	681, 3087, 3672
BbvI	GCAGC	9 cut(s)	145, 499, 752, 941, 2010, 2691, 2978, 3559, 3649
BceAI	ACGGC	1 cut(s)	274
BcgI	CGANNNNNNTGC	2 cut(s)	2185, 2219
BciT130I	CCWGG	5 cut(s)	387, 852, 881, 1688, 1868
BciVI	GTATCC	2 cut(s)	834, 1232
BclI	TGATCA	2 cut(s)	1506, 1665
BcnI	CCSGG	2 cut(s)	960, 1191
BcoDI	GTCTC	5 cut(s)	632, 2109, 2453, 2564, 3603
BfmI	CTRYAG	1 cut(s)	2430
BfuI	GTATCC	2 cut(s)	834, 1232
BglII	AGATCT	2 cut(s)	3049, 3310
Bme1390I	CCNGG	7 cut(s)	387, 852, 881, 960, 1191, 1688, 1868
Bme18I	GGWCC	3 cut(s)	844, 1028, 3148
BmeT110I	CYCGRG	1 cut(s)	1157
BmgBI	CACGTC	1 cut(s)	1309
BmgT120I	GGNCC	6 cut(s)	844, 895, 1028, 2372, 3148, 3500
BmiI	GGNNCC	6 cut(s)	241, 384, 1139, 1195, 1847, 3531
BmrFI	CCNGG	7 cut(s)	387, 852, 881, 960, 1191, 1688, 1868
BmrI	ACTGGG	4 cut(s)	103, 1252, 1851, 3534
BmuI	ACTGGG	4 cut(s)	103, 1252, 1851, 3534
BpiI	GAAGAC	4 cut(s)	2003, 2217, 2235, 2336
BplI	GAGNNNNNCTC	4 cut(s)	185, 217, 2479, 2511
BpmI	CTGGAG	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	2895
Bpu14I	TTCGAA	1 cut(s)	1747
BpuEI	CTTGAG	7 cut(s)	1042, 2506, 2640, 3228, 3296, 3335, 3499
BpuMI	CCSGG	2 cut(s)	960, 1191
BsaAI	YACGTR	2 cut(s)	2576, 3332
BsaI	GGTCTC	1 cut(s)	2109
BsaJI	CCNNGG	4 cut(s)	1158, 1686, 2751, 3534
Bsc4I	CCNNNNNNNGG	6 cut(s)	688, 965, 1692, 1693, 2757, 3171
Bse118I	RCCGGY	1 cut(s)	3335
Bse1I	ACTGG	9 cut(s)	37, 109, 1247, 1340, 1846, 2169, 3262, 3415, 3529
Bse3DI	GCAATG	3 cut(s)	2514, 2634, 3066
BseBI	CCWGG	5 cut(s)	387, 852, 881, 1688, 1868
BseDI	CCNNGG	4 cut(s)	1158, 1686, 2751, 3534
BseGI	GGATG	4 cut(s)	41, 773, 2313, 3463
BseLI	CCNNNNNNNGG	6 cut(s)	688, 965, 1692, 1693, 2757, 3171
BseMI	GCAATG	3 cut(s)	2514, 2634, 3066
BseMII	CTCAG	7 cut(s)	825, 2028, 2382, 2448, 2829, 2909, 3100
BseNI	ACTGG	9 cut(s)	37, 109, 1247, 1340, 1846, 2169, 3262, 3415, 3529
BseRI	GAGGAG	2 cut(s)	1838, 3332
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	9 cut(s)	145, 499, 752, 941, 2010, 2691, 2978, 3559, 3649
BseYI	CCCAGC	1 cut(s)	2296
BsgI	GTGCAG	1 cut(s)	654
BshFI	GGCC	6 cut(s)	261, 896, 2374, 2744, 3414, 3501
BshNI	GGYRCC	1 cut(s)	1193
BsiHKAI	GWGCWC	3 cut(s)	681, 3087, 3672
BsiHKCI	CYCGRG	1 cut(s)	1157
BsiSI	CCGG	3 cut(s)	959, 1191, 3336
BslFI	GGGAC	3 cut(s)	1709, 2475, 3552
BslI	CCNNNNNNNGG	6 cut(s)	688, 965, 1692, 1693, 2757, 3171
BsmAI	GTCTC	5 cut(s)	632, 2109, 2453, 2564, 3603
BsmFI	GGGAC	3 cut(s)	1709, 2475, 3552
BsmI	GAATGC	3 cut(s)	1268, 1422, 1645
BsnI	GGCC	6 cut(s)	261, 896, 2374, 2744, 3414, 3501
Bso31I	GGTCTC	1 cut(s)	2109
BsoBI	CYCGRG	1 cut(s)	1157
Bsp119I	TTCGAA	1 cut(s)	1747
Bsp1286I	GDGCHC	4 cut(s)	681, 1848, 3087, 3672
BspACI	CCGC	3 cut(s)	218, 3151, 3559
BspANI	GGCC	6 cut(s)	261, 896, 2374, 2744, 3414, 3501
BspCNI	CTCAG	7 cut(s)	826, 2029, 2381, 2449, 2830, 2908, 3099
BspHI	TCATGA	1 cut(s)	952
BspLI	GGNNCC	6 cut(s)	241, 384, 1139, 1195, 1847, 3531
BspMAI	CTGCAG	1 cut(s)	2434
BspPI	GGATC	4 cut(s)	950, 1448, 3108, 3431
BspQI	GCTCTTC	2 cut(s)	2532, 3189
BspT104I	TTCGAA	1 cut(s)	1747
BspT107I	GGYRCC	1 cut(s)	1193
BspTNI	GGTCTC	1 cut(s)	2109
BsrDI	GCAATG	3 cut(s)	2514, 2634, 3066
BsrFI	RCCGGY	1 cut(s)	3335
BsrI	ACTGG	9 cut(s)	37, 109, 1247, 1340, 1846, 2169, 3262, 3415, 3529
BssAI	RCCGGY	1 cut(s)	3335
BssECI	CCNNGG	4 cut(s)	1158, 1686, 2751, 3534
BssSI	CACGAG	2 cut(s)	233, 2674
BssT1I	CCWWGG	2 cut(s)	2751, 3534
Bst2BI	CACGAG	2 cut(s)	233, 2674
Bst2UI	CCWGG	5 cut(s)	387, 852, 881, 1688, 1868
Bst4CI	ACNGT	6 cut(s)	288, 925, 1453, 2287, 3216, 3454
Bst6I	CTCTTC	5 cut(s)	354, 813, 2310, 2532, 3189
BstAPI	GCANNNNNTGC	4 cut(s)	36, 641, 938, 2429
BstBAI	YACGTR	2 cut(s)	2576, 3332
BstBI	TTCGAA	1 cut(s)	1747
BstC8I	GCNNGC	3 cut(s)	594, 2198, 2892
BstEII	GGTNACC	1 cut(s)	854
BstF5I	GGATG	4 cut(s)	41, 773, 2313, 3463
BstMAI	GTCTC	5 cut(s)	632, 2109, 2453, 2564, 3603
BstNI	CCWGG	5 cut(s)	387, 852, 881, 1688, 1868
BstNSI	RCATGY	1 cut(s)	1765
BstPI	GGTNACC	1 cut(s)	854
BstSCI	CCNGG	7 cut(s)	385, 850, 879, 958, 1189, 1686, 1866
BstSFI	CTRYAG	1 cut(s)	2430
BstSLI	GKGCMC	1 cut(s)	681
BstV1I	GCAGC	9 cut(s)	145, 499, 752, 941, 2010, 2691, 2978, 3559, 3649
BstV2I	GAAGAC	4 cut(s)	2003, 2217, 2235, 2336
BstX2I	RGATCY	2 cut(s)	3049, 3310
BstYI	RGATCY	2 cut(s)	3049, 3310
BsuI	GTATCC	2 cut(s)	834, 1232
BsuRI	GGCC	6 cut(s)	261, 896, 2374, 2744, 3414, 3501
BtrI	CACGTC	1 cut(s)	1309
BtsCI	GGATG	4 cut(s)	41, 773, 2313, 3463
BtsI	GCAGTG	3 cut(s)	279, 311, 2520
BtsIMutI	CAGTG	8 cut(s)	30, 279, 311, 1509, 2520, 3269, 3408, 3450
Cac8I	GCNNGC	3 cut(s)	594, 2198, 2892
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	1 cut(s)	952
Cfr10I	RCCGGY	1 cut(s)	3335
Cfr13I	GGNCC	6 cut(s)	844, 895, 1028, 2372, 3148, 3500
CseI	GACGC	1 cut(s)	1343
CsiI	ACCWGGT	1 cut(s)	1866
Csp6I	GTAC	6 cut(s)	98, 1293, 1302, 1449, 3280, 3448
CviQI	GTAC	6 cut(s)	98, 1293, 1302, 1449, 3280, 3448
DraI	TTTAAA	3 cut(s)	540, 600, 3303
Eam1104I	CTCTTC	5 cut(s)	354, 813, 2310, 2532, 3189
EarI	CTCTTC	5 cut(s)	354, 813, 2310, 2532, 3189
Eco130I	CCWWGG	2 cut(s)	2751, 3534
Eco24I	GRGCYC	1 cut(s)	1848
Eco31I	GGTCTC	1 cut(s)	2109
Eco32I	GATATC	2 cut(s)	440, 3229
Eco47I	GGWCC	3 cut(s)	844, 1028, 3148
Eco57I	CTGAAG	1 cut(s)	1200
Eco72I	CACGTG	1 cut(s)	3332
Eco88I	CYCGRG	1 cut(s)	1157
Eco91I	GGTNACC	1 cut(s)	854
EcoO65I	GGTNACC	1 cut(s)	854
EcoRI	GAATTC	2 cut(s)	948, 982
EcoRII	CCWGG	5 cut(s)	385, 850, 879, 1686, 1866
EcoRV	GATATC	2 cut(s)	440, 3229
EcoT14I	CCWWGG	2 cut(s)	2751, 3534
EcoT22I	ATGCAT	5 cut(s)	458, 560, 1129, 1231, 2257
EcoT38I	GRGCYC	1 cut(s)	1848
ErhI	CCWWGG	2 cut(s)	2751, 3534
FalI	AAGNNNNNCTT	2 cut(s)	1758, 1790
FaqI	GGGAC	3 cut(s)	1709, 2475, 3552
FbaI	TGATCA	2 cut(s)	1506, 1665
FblI	GTMKAC	1 cut(s)	1632
FokI	GGATG	4 cut(s)	48, 780, 2320, 3470
FriOI	GRGCYC	1 cut(s)	1848
GsaI	CCCAGC	1 cut(s)	2300
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	6 cut(s)	261, 896, 2374, 2744, 3414, 3501
HapII	CCGG	3 cut(s)	959, 1191, 3336
HgaI	GACGC	1 cut(s)	1343
HindIII	AAGCTT	3 cut(s)	1221, 1823, 3272
HpaII	CCGG	3 cut(s)	959, 1191, 3336
HphI	GGTGA	4 cut(s)	488, 1928, 2179, 2711
Hpy166II	GTNNAC	8 cut(s)	679, 1345, 1633, 1759, 3037, 3259, 3442, 3450
Hpy8I	GTNNAC	8 cut(s)	679, 1345, 1633, 1759, 3037, 3259, 3442, 3450
Hpy99I	CGWCG	1 cut(s)	1359
HpyCH4III	ACNGT	6 cut(s)	288, 925, 1453, 2287, 3216, 3454
HpyCH4IV	ACGT	3 cut(s)	1308, 2575, 3331
HpySE526I	ACGT	3 cut(s)	1308, 2575, 3331
Ksp22I	TGATCA	2 cut(s)	1506, 1665
LguI	GCTCTTC	2 cut(s)	2532, 3189
LmnI	GCTCC	8 cut(s)	193, 323, 461, 589, 1143, 1851, 3082, 3667
Lsp1109I	GCAGC	9 cut(s)	145, 499, 752, 941, 2010, 2691, 2978, 3559, 3649
MabI	ACCWGGT	1 cut(s)	1866
MaeII	ACGT	3 cut(s)	1308, 2575, 3331
MaeIII	GTNAC	7 cut(s)	48, 111, 244, 854, 1831, 2167, 2449
MfeI	CAATTG	3 cut(s)	683, 1032, 2412
MflI	RGATCY	2 cut(s)	3049, 3310
MhlI	GDGCHC	4 cut(s)	681, 1848, 3087, 3672
MlyI	GAGTC	3 cut(s)	2497, 2936, 3172
MmeI	TCCRAC	6 cut(s)	191, 999, 1092, 1390, 1394, 3560
Mph1103I	ATGCAT	5 cut(s)	458, 560, 1129, 1231, 2257
MroXI	GAANNNNTTC	2 cut(s)	1152, 1185
MslI	CAYNNNNRTG	5 cut(s)	371, 492, 1097, 1208, 2471
MspA1I	CMGCKG	2 cut(s)	512, 533
MspI	CCGG	3 cut(s)	959, 1191, 3336
MspR9I	CCNGG	7 cut(s)	387, 852, 881, 960, 1191, 1688, 1868
MunI	CAATTG	3 cut(s)	683, 1032, 2412
Mva1269I	GAATGC	3 cut(s)	1268, 1422, 1645
MvaI	CCWGG	5 cut(s)	387, 852, 881, 1688, 1868
NciI	CCSGG	2 cut(s)	960, 1191
NlaIV	GGNNCC	6 cut(s)	241, 384, 1139, 1195, 1847, 3531
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	3 cut(s)	48, 1831, 2167
NsiI	ATGCAT	5 cut(s)	458, 560, 1129, 1231, 2257
NspI	RCATGY	1 cut(s)	1765
NspV	TTCGAA	1 cut(s)	1747
PagI	TCATGA	1 cut(s)	952
PciSI	GCTCTTC	2 cut(s)	2532, 3189
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	3 cut(s)	1268, 1422, 1645
PdmI	GAANNNNTTC	2 cut(s)	1152, 1185
PfeI	GAWTC	8 cut(s)	1104, 1186, 1216, 1385, 1473, 1499, 2219, 2948
PleI	GAGTC	3 cut(s)	2496, 2935, 3172
PmaCI	CACGTG	1 cut(s)	3332
PmlI	CACGTG	1 cut(s)	3332
PpsI	GAGTC	3 cut(s)	2496, 2935, 3172
Ppu21I	YACGTR	2 cut(s)	2576, 3332
PsiI	TTATAA	2 cut(s)	1379, 2864
Psp6I	CCWGG	5 cut(s)	385, 850, 879, 1686, 1866
PspCI	CACGTG	1 cut(s)	3332
PspEI	GGTNACC	1 cut(s)	854
PspFI	CCCAGC	1 cut(s)	2296
PspGI	CCWGG	5 cut(s)	385, 850, 879, 1686, 1866
PspN4I	GGNNCC	6 cut(s)	241, 384, 1139, 1195, 1847, 3531
PspPI	GGNCC	6 cut(s)	844, 895, 1028, 2372, 3148, 3500
PstI	CTGCAG	1 cut(s)	2434
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	2 cut(s)	3049, 3310
PvuII	CAGCTG	2 cut(s)	512, 533
RsaI	GTAC	6 cut(s)	99, 1294, 1303, 1450, 3281, 3449
RsaNI	GTAC	6 cut(s)	98, 1293, 1302, 1449, 3280, 3448
RseI	CAYNNNNRTG	5 cut(s)	371, 492, 1097, 1208, 2471
SapI	GCTCTTC	2 cut(s)	2532, 3189
Sau96I	GGNCC	6 cut(s)	844, 895, 1028, 2372, 3148, 3500
SchI	GAGTC	3 cut(s)	2497, 2936, 3172
ScrFI	CCNGG	7 cut(s)	387, 852, 881, 960, 1191, 1688, 1868
SduI	GDGCHC	4 cut(s)	681, 1848, 3087, 3672
SexAI	ACCWGGT	1 cut(s)	1866
SfcI	CTRYAG	1 cut(s)	2430
SfuI	TTCGAA	1 cut(s)	1747
SinI	GGWCC	3 cut(s)	844, 1028, 3148
SmiMI	CAYNNNNRTG	5 cut(s)	371, 492, 1097, 1208, 2471
SmlI	CTYRAG	7 cut(s)	1057, 2485, 2655, 3243, 3275, 3314, 3514
SmoI	CTYRAG	7 cut(s)	1057, 2485, 2655, 3243, 3275, 3314, 3514
SsiI	CCGC	3 cut(s)	218, 3151, 3559
SspI	AATATT	1 cut(s)	1261
StyD4I	CCNGG	7 cut(s)	385, 850, 879, 958, 1189, 1686, 1866
StyI	CCWWGG	2 cut(s)	2751, 3534
TaaI	ACNGT	6 cut(s)	288, 925, 1453, 2287, 3216, 3454
TaiI	ACGT	3 cut(s)	1311, 2578, 3334
TaqI	TCGA	8 cut(s)	604, 901, 1494, 1747, 2084, 2205, 2533, 2561
TaqII	GACCGA	1 cut(s)	36
TatI	WGTACW	3 cut(s)	97, 1292, 1301
TauI	GCSGC	2 cut(s)	221, 3561
TfiI	GAWTC	8 cut(s)	1104, 1186, 1216, 1385, 1473, 1499, 2219, 2948
TscAI	CASTG	8 cut(s)	37, 279, 318, 1509, 2527, 3269, 3415, 3457
TseFI	GTSAC	3 cut(s)	48, 1831, 2167
Tsp45I	GTSAC	3 cut(s)	48, 1831, 2167
TspDTI	ATGAA	8 cut(s)	941, 1223, 1226, 2198, 2519, 2825, 3239, 3281
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	8 cut(s)	37, 279, 318, 1509, 2527, 3269, 3415, 3457
VneI	GTGCAC	1 cut(s)	677
VpaK11BI	GGWCC	3 cut(s)	844, 1028, 3148
XapI	RAATTY	6 cut(s)	948, 982, 1794, 3013, 3204, 3657
XbaI	TCTAGA	1 cut(s)	1000
XceI	RCATGY	1 cut(s)	1765
XmiI	GTMKAC	1 cut(s)	1632
XmnI	GAANNNNTTC	2 cut(s)	1152, 1185
Zsp2I	ATGCAT	5 cut(s)	458, 560, 1129, 1231, 2257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.