Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012556

Physical Location & Seq

Genomic Coordinates Reverse (-)

2281396 .. 2282067

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04272.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAGTGAAACACCTACTAGGGAAACCCAGTCGGATGTGTCTGGGTCTTCTTCTGGGACGAAGGGAACTACAATTCGTGTAGAGCTCCCCAAATGCACAGAGAAGATCAAGATCAAAGTGATGCAGAAAGTAGTGATGCAAAATATGGTCACTCAGCTATATGAGATGGAAGTTAAAGTCCATCCAATGGACACCCTCAAAAAGATTCGGGAGAAGTTGACGAGGGCCGAAAATTTGAAGGGCTGGCCTCTCCCAGCAAATGGCTACTCGTTTAGGCGTCAACCTCGCACCGAAAACCATGCTGATAACGGTGAAGAATTGATGGAGAGTGGGGGGATGAGGACCTTCAAAAAACTCAAAATTCAAAATGGTGACACTATACTGGTGGTACCATCTAGTTTCCCAGTGTACATAACTGGGGGGATGGGTATAGATGGTATTTTGGTGACCATCCGGCCATTGGAGAAGGTCGGGACTTTGAGGGAGGAGTTGGAAAGACGTCAACCTCAAAATCTCCCAGATTGTTTCAAGTTATCCGTCGCAGATGTGTTGATGGAGGTCGACATGCCTTTACAATTGTATAACTTGCGTCGGGGATCTCGCGTCAGAGTCACTCATGACTCTGATCTTGGACCTACGGAGGGACTAGTAGCAGCAGACCATGTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

25.06

Weight (kDa)

8.81

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04272 FvH4_1g04281
rosa_chinensis	RchiOBHm_Chr6g0254811
rosa_laevigata	RLG00000016060
rosa_roxburghii	Rroxscaffold_2G00151550
rosa_rugosa	Rorug01G0212700
rosa_samantha	Rh1AG060600 Rh1AG159700 Rh1BG196100 Rh1CG148900 Rh1DG224100 Rh2BG047700 Rh2BG531100 Rh2CG049800 Rh2DG540100 Rh7CG018700
rosa_wichuraiana	Rw2G004150 Rw2G004160 Rw6G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	670
AatII	GACGTC	1 cut(s)	502
Acc65I	GGTACC	1 cut(s)	388
AccB1I	GGYRCC	1 cut(s)	388
AccB7I	CCANNNNNTGG	2 cut(s)	187, 260
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	1 cut(s)	603
AclWI	GGATC	1 cut(s)	604
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	232, 360
AcyI	GRCGYC	2 cut(s)	277, 499
AfaI	GTAC	2 cut(s)	390, 410
AfiI	CCNNNNNNNGG	4 cut(s)	187, 260, 460, 641
AgsI	TTSAA	4 cut(s)	238, 349, 365, 529
AhlI	ACTAGT	1 cut(s)	646
AluBI	AGCT	2 cut(s)	85, 157
AluI	AGCT	2 cut(s)	85, 157
Alw21I	GWGCWC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	604
AoxI	GGCC	3 cut(s)	225, 245, 455
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	2 cut(s)	232, 360
Asp718I	GGTACC	1 cut(s)	388
AspS9I	GGNCC	3 cut(s)	225, 342, 632
AsuHPI	GGTGA	3 cut(s)	323, 383, 457
AvaII	GGWCC	2 cut(s)	342, 632
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	665
BccI	CCATC	8 cut(s)	160, 189, 316, 400, 418, 428, 458, 547
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BcuI	ACTAGT	1 cut(s)	646
BfaI	CTAG	3 cut(s)	18, 396, 647
BisI	GCNGC	1 cut(s)	654
BlsI	GCNGC	1 cut(s)	655
Bme18I	GGWCC	2 cut(s)	342, 632
BmgT120I	GGNCC	3 cut(s)	225, 342, 632
BmiI	GGNNCC	1 cut(s)	390
BmrI	ACTGGG	3 cut(s)	22, 398, 426
BmsI	GCATC	2 cut(s)	111, 126
BmuI	ACTGGG	3 cut(s)	22, 398, 426
BpiI	GAAGAC	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	110
BsaHI	GRCGYC	2 cut(s)	277, 499
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 260, 460, 641
Bse1I	ACTGG	4 cut(s)	28, 387, 404, 421
Bse8I	GATNNNNATC	1 cut(s)	110
BseGI	GGATG	5 cut(s)	40, 181, 342, 429, 450
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	4 cut(s)	187, 260, 460, 641
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	4 cut(s)	28, 387, 404, 421
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	665
BseYI	CCCAGC	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	227, 247, 457
BshNI	GGYRCC	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	3 cut(s)	70, 487, 657
BslI	CCNNNNNNNGG	4 cut(s)	187, 260, 460, 641
BsmFI	GGGAC	3 cut(s)	70, 487, 657
BsnI	GGCC	3 cut(s)	227, 247, 457
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	4 cut(s)	105, 111, 596, 625
BspANI	GGCC	3 cut(s)	227, 247, 457
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	1 cut(s)	390
BspPI	GGATC	1 cut(s)	604
BspT107I	GGYRCC	1 cut(s)	388
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	4 cut(s)	28, 387, 404, 421
BssMI	GATC	4 cut(s)	105, 111, 596, 625
BssNI	GRCGYC	2 cut(s)	277, 499
Bst4CI	ACNGT	1 cut(s)	311
BstACI	GRCGYC	2 cut(s)	277, 499
BstAUI	TGTACA	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	445
BstF5I	GGATG	5 cut(s)	40, 181, 342, 429, 450
BstFNI	CGCG	1 cut(s)	603
BstKTI	GATC	4 cut(s)	108, 114, 599, 628
BstMBI	GATC	4 cut(s)	105, 111, 596, 625
BstNSI	RCATGY	1 cut(s)	568
BstPI	GGTNACC	1 cut(s)	445
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	665
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BsuRI	GGCC	3 cut(s)	227, 247, 457
BtsCI	GGATG	5 cut(s)	40, 181, 342, 429, 450
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	245
CciI	TCATGA	1 cut(s)	616
Cfr13I	GGNCC	3 cut(s)	225, 342, 632
CseI	GACGC	3 cut(s)	266, 578, 592
Csp6I	GTAC	2 cut(s)	389, 409
CviAII	CATG	4 cut(s)	299, 565, 617, 662
CviJI	RGCY	7 cut(s)	85, 157, 227, 243, 247, 264, 457
CviKI_1	RGCY	7 cut(s)	85, 157, 227, 243, 247, 264, 457
CviQI	GTAC	2 cut(s)	389, 409
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	4 cut(s)	107, 113, 598, 627
DpnII	GATC	4 cut(s)	105, 111, 596, 625
EaeI	YGGCCR	1 cut(s)	455
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	342, 632
Eco53kI	GAGCTC	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	342
EcoO65I	GGTNACC	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	4 cut(s)	302, 568, 620, 665
FaqI	GGGAC	3 cut(s)	70, 487, 657
FatI	CATG	4 cut(s)	298, 564, 616, 661
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	1 cut(s)	654
FokI	GGATG	5 cut(s)	47, 168, 349, 436, 437
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	654
FspBI	CTAG	3 cut(s)	18, 396, 647
GluI	GCNGC	1 cut(s)	654
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	227, 247, 457
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	3 cut(s)	266, 578, 592
Hin1I	GRCGYC	2 cut(s)	277, 499
Hin1II	CATG	4 cut(s)	302, 568, 620, 665
HincII	GTYRAC	4 cut(s)	219, 281, 503, 562
HindII	GTYRAC	4 cut(s)	219, 281, 503, 562
HinfI	GANTC	3 cut(s)	205, 609, 620
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	3 cut(s)	323, 383, 457
Hpy166II	GTNNAC	5 cut(s)	219, 281, 409, 503, 562
Hpy188I	TCNGA	3 cut(s)	34, 608, 625
Hpy188III	TCNNGA	4 cut(s)	109, 209, 472, 617
Hpy8I	GTNNAC	5 cut(s)	219, 281, 409, 503, 562
Hpy99I	CGWCG	2 cut(s)	542, 594
HpyAV	CCTTC	4 cut(s)	55, 232, 355, 460
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	3 cut(s)	96, 124, 139
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	499
Hsp92I	GRCGYC	2 cut(s)	277, 499
Hsp92II	CATG	4 cut(s)	302, 568, 620, 665
KpnI	GGTACC	1 cut(s)	392
Kzo9I	GATC	4 cut(s)	105, 111, 596, 625
LmnI	GCTCC	1 cut(s)	90
Lsp1109I	GCAGC	1 cut(s)	665
LweI	GCATC	2 cut(s)	111, 126
MaeI	CTAG	3 cut(s)	18, 396, 647
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	4 cut(s)	148, 371, 445, 610
MalI	GATC	4 cut(s)	107, 113, 598, 627
MboI	GATC	4 cut(s)	105, 111, 596, 625
MboII	GAAGA	4 cut(s)	39, 42, 115, 326
MfeI	CAATTG	1 cut(s)	575
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	5 cut(s)	72, 232, 317, 360, 575
MlyI	GAGTC	2 cut(s)	614, 618
MmeI	TCCRAC	2 cut(s)	12, 471
MseI	TTAA	1 cut(s)	174
MspI	CCGG	1 cut(s)	454
MunI	CAATTG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	603
NdeII	GATC	4 cut(s)	105, 111, 596, 625
NlaIII	CATG	4 cut(s)	302, 568, 620, 665
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	4 cut(s)	148, 371, 445, 610
NspI	RCATGY	1 cut(s)	568
PagI	TCATGA	1 cut(s)	616
PfeI	GAWTC	1 cut(s)	205
PflMI	CCANNNNNTGG	2 cut(s)	187, 260
PkrI	GCNGC	1 cut(s)	655
PleI	GAGTC	2 cut(s)	614, 617
PpsI	GAGTC	2 cut(s)	614, 617
PpuMI	RGGWCCY	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	670
Psp124BI	GAGCTC	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	342
PspEI	GGTNACC	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	3 cut(s)	225, 342, 632
PspPPI	RGGWCCY	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	2 cut(s)	390, 410
RsaNI	GTAC	2 cut(s)	389, 409
SacI	GAGCTC	1 cut(s)	87
SalI	GTCGAC	1 cut(s)	560
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	654
Sau3AI	GATC	4 cut(s)	105, 111, 596, 625
Sau96I	GGNCC	3 cut(s)	225, 342, 632
SchI	GAGTC	2 cut(s)	614, 618
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	111, 126
SinI	GGWCC	2 cut(s)	342, 632
SpeI	ACTAGT	1 cut(s)	646
Sse9I	AATT	5 cut(s)	72, 232, 317, 360, 575
SspMI	CTAG	3 cut(s)	18, 396, 647
SstI	GAGCTC	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	1 cut(s)	561
TasI	AATT	5 cut(s)	72, 232, 317, 360, 575
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	4 cut(s)	148, 371, 445, 610
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	4 cut(s)	148, 371, 445, 610
TspGWI	ACGGA	2 cut(s)	526, 653
TspRI	CASTG	1 cut(s)	411
Van91I	CCANNNNNTGG	2 cut(s)	187, 260
VpaK11BI	GGWCC	2 cut(s)	342, 632
XapI	RAATTY	2 cut(s)	232, 360
XceI	RCATGY	1 cut(s)	568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	3 cut(s)	18, 396, 647
ZraI	GACGTC	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.