Rorug01G0212700

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012556
Physical Location & Seq
Reverse (-)
30331105 .. 30335795
4691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0212700.1

Sequence Viewer

Length: 876 bp
ATGTATAGGGAACGCGGAGGTGGGTCGTCGAAAACAGAGCTCGTCGGTGGGCCGCTGGACCGCAAGCGCATCAACGATGCGCTGGACAAGCACCTAGAGAAGTCCTCCCCATCCACATCCAGAGCTTTGGCCAATAGTAAAGACAAAGAGAGGCTCTCTGTGCCCTCCACTTCCGCCGGAAAGTCTCAGCTCGATCACCGCGCCGCCGCCGCCGCCGCCGCCTCGCTCGCCAAGAACAAGTGCTCCGATGAGGAATCTGAGACGGACAGTGAAGAATCAGATGTCAGTGGTTCTGATGGAGACGACACATCTTGGATTTCATGGTTCTGCAATTTGCGAGGAAACGAATTTTTTTGTGAAGTCGATGATGAATACATCCAAGATGATTTTAATCTCTGTGGTTTGAGCAGTCAAGTTCCATATTATGATTATGCTCTTGATCTGATTTTAGATGTTGAATCTTCTCATGGTGATATGTTCACTGAAGAGCAGAATGAGTTGGTTGAATCAGCAGCGGAGATGCTGTACGGTCTTATTCATGTTAGATACATATTGACAAGCAAAGGAATGTCTGCAATGTTGGAGAAATACAAAAACTATGACTTTGGAAGATGTCCAAGAGTTTACTGCTGTGGACAACCCTGCCTTCCAGTTGGTCAATCTGACATTCCTCGATCAAGCACTGTAAAAATATACTGCCCCAAATGCGAAGATATATATTACCCTCGATCCAAGTACCAAGGCAATATTGATGGAGCTTATTTCGGCACCACATTTCCGCACCTATTCTTGATGACGTATGGACACCTTAAACCACAAAAGGCTTCACAGAGTTATGTGCCAAGAGTTTTCGGCTTCAAGCTCCACAAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

291

Amino Acids

32.55

Weight (kDa)

5.25

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CK_II_beta PF01214 104 - 287 2.2e-77 Casein kinase II regulatory subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 767
AccII CGCG 2 cut(s) 15, 201
AclWI GGATC 1 cut(s) 723
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 2 cut(s) 527, 737
AgsI TTSAA 3 cut(s) 458, 506, 859
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 5 cut(s) 40, 125, 190, 758, 862
AluI AGCT 5 cut(s) 40, 125, 190, 758, 862
Alw21I GWGCWC 2 cut(s) 42, 245
Alw26I GTCTC 3 cut(s) 189, 254, 294
AlwI GGATC 1 cut(s) 723
AoxI GGCC 2 cut(s) 50, 129
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 3 cut(s) 69, 82, 203
AspS9I GGNCC 2 cut(s) 50, 58
AsuHPI GGTGA 2 cut(s) 188, 482
AvaII GGWCC 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 165
BalI TGGCCA 1 cut(s) 131
BanI GGYRCC 1 cut(s) 767
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 2 cut(s) 42, 245
BbvI GCAGC 1 cut(s) 524
BccI CCATC 3 cut(s) 118, 290, 746
BcoDI GTCTC 3 cut(s) 189, 254, 294
BfaI CTAG 1 cut(s) 95
BisI GCNGC 8 cut(s) 53, 204, 207, 210, 213, 216, 219, 513
BlsI GCNGC 8 cut(s) 54, 205, 208, 211, 214, 217, 220, 514
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 50, 58
BmiI GGNNCC 1 cut(s) 769
BmsI GCATC 3 cut(s) 67, 78, 510
BplI GAGNNNNNCTC 4 cut(s) 89, 121, 140, 172
BsaBI GATNNNNATC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 739
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 509, 539
Bse1I ACTGG 1 cut(s) 650
Bse3DI GCAATG 1 cut(s) 582
Bse8I GATNNNNATC 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 739
BseGI GGATG 3 cut(s) 110, 116, 375
BseJI GATNNNNATC 1 cut(s) 390
BseMI GCAATG 1 cut(s) 582
BseMII CTCAG 2 cut(s) 200, 249
BseNI ACTGG 1 cut(s) 650
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 1 cut(s) 524
Bsh1236I CGCG 2 cut(s) 15, 201
BshFI GGCC 2 cut(s) 52, 131
BshNI GGYRCC 1 cut(s) 767
BsiHKAI GWGCWC 2 cut(s) 42, 245
BsiSI CCGG 1 cut(s) 177
BsmAI GTCTC 3 cut(s) 189, 254, 294
BsmBI CGTCTC 2 cut(s) 254, 294
BsnI GGCC 2 cut(s) 52, 131
Bsp1286I GDGCHC 3 cut(s) 42, 165, 245
Bsp143I GATC 4 cut(s) 193, 439, 674, 728
BspANI GGCC 2 cut(s) 52, 131
BspCNI CTCAG 2 cut(s) 199, 250
BspFNI CGCG 2 cut(s) 15, 201
BspLI GGNNCC 1 cut(s) 769
BspPI GGATC 1 cut(s) 723
BspQI GCTCTTC 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 767
BsrDI GCAATG 1 cut(s) 582
BsrI ACTGG 1 cut(s) 650
BssECI CCNNGG 1 cut(s) 739
BssMI GATC 4 cut(s) 193, 439, 674, 728
BssT1I CCWWGG 1 cut(s) 739
Bst4CI ACNGT 3 cut(s) 269, 530, 685
Bst6I CTCTTC 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 65, 228
BstDEI CTNAG 2 cut(s) 186, 258
BstF5I GGATG 3 cut(s) 110, 116, 375
BstFNI CGCG 2 cut(s) 15, 201
BstHHI GCGC 3 cut(s) 69, 82, 203
BstKTI GATC 4 cut(s) 196, 442, 677, 731
BstMAI GTCTC 3 cut(s) 189, 254, 294
BstMBI GATC 4 cut(s) 193, 439, 674, 728
BstMWI GCNNNNNNNGC 8 cut(s) 88, 160, 209, 212, 215, 218, 227, 705
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 2 cut(s) 15, 201
BstV1I GCAGC 1 cut(s) 524
BstXI CCANNNNNNTGG 1 cut(s) 127
BsuRI GGCC 2 cut(s) 52, 131
BtsCI GGATG 3 cut(s) 110, 116, 375
BtsIMutI CAGTG 4 cut(s) 274, 292, 480, 681
Cac8I GCNNGC 2 cut(s) 65, 228
CfoI GCGC 3 cut(s) 69, 82, 203
Cfr13I GGNCC 2 cut(s) 50, 58
Csp6I GTAC 2 cut(s) 526, 736
CviAII CATG 3 cut(s) 321, 467, 539
CviQI GTAC 2 cut(s) 526, 736
DdeI CTNAG 2 cut(s) 186, 258
DpnI GATC 4 cut(s) 195, 441, 676, 730
DpnII GATC 4 cut(s) 193, 439, 674, 728
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
EciI GGCGGA 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 504
EcoICRI GAGCTC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 739
Esp3I CGTCTC 2 cut(s) 254, 294
FaeI CATG 3 cut(s) 324, 470, 542
FatI CATG 3 cut(s) 320, 466, 538
Fnu4HI GCNGC 8 cut(s) 53, 204, 207, 210, 213, 216, 219, 513
FokI GGATG 3 cut(s) 97, 103, 362
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 8 cut(s) 53, 204, 207, 210, 213, 216, 219, 513
FspBI CTAG 1 cut(s) 95
GlaI GCGC 3 cut(s) 68, 81, 202
GluI GCNGC 8 cut(s) 53, 204, 207, 210, 213, 216, 219, 513
HaeIII GGCC 2 cut(s) 52, 131
HapII CCGG 1 cut(s) 177
HhaI GCGC 3 cut(s) 69, 82, 203
Hin1II CATG 3 cut(s) 324, 470, 542
Hin6I GCGC 3 cut(s) 67, 80, 201
HinP1I GCGC 3 cut(s) 67, 80, 201
HinfI GANTC 4 cut(s) 254, 275, 458, 506
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 188, 482
Hpy166II GTNNAC 3 cut(s) 480, 625, 635
Hpy188I TCNGA 6 cut(s) 247, 259, 280, 295, 444, 664
Hpy188III TCNNGA 3 cut(s) 120, 437, 790
Hpy8I GTNNAC 3 cut(s) 480, 625, 635
Hpy99I CGWCG 2 cut(s) 31, 47
HpyAV CCTTC 1 cut(s) 656
HpyCH4III ACNGT 3 cut(s) 269, 530, 685
HpyCH4IV ACGT 1 cut(s) 797
HpyCH4V TGCA 2 cut(s) 330, 575
HpyF10VI GCNNNNNNNGC 8 cut(s) 88, 160, 209, 212, 215, 218, 227, 705
HpyF3I CTNAG 2 cut(s) 186, 258
HpySE526I ACGT 1 cut(s) 797
Hsp92II CATG 3 cut(s) 324, 470, 542
HspAI GCGC 3 cut(s) 67, 80, 201
Kzo9I GATC 4 cut(s) 193, 439, 674, 728
LguI GCTCTTC 1 cut(s) 480
LmnI GCTCC 3 cut(s) 248, 755, 867
LpnPI CCDG 6 cut(s) 41, 68, 133, 190, 655, 663
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 3 cut(s) 67, 78, 510
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 797
MalI GATC 4 cut(s) 195, 441, 676, 730
MboI GATC 4 cut(s) 193, 439, 674, 728
MboII GAAGA 5 cut(s) 284, 453, 497, 621, 722
MhlI GDGCHC 3 cut(s) 42, 165, 245
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 2 cut(s) 331, 347
MluNI TGGCCA 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 561
MnlI CCTC 9 cut(s) 11, 115, 144, 175, 232, 244, 332, 681, 735
Mox20I TGGCCA 1 cut(s) 131
MscI TGGCCA 1 cut(s) 131
MseI TTAA 2 cut(s) 390, 810
Msp20I TGGCCA 1 cut(s) 131
MspA1I CMGCKG 2 cut(s) 55, 515
MspI CCGG 1 cut(s) 177
MvnI CGCG 2 cut(s) 15, 201
MwoI GCNNNNNNNGC 8 cut(s) 88, 160, 209, 212, 215, 218, 227, 705
NdeII GATC 4 cut(s) 193, 439, 674, 728
NlaIII CATG 3 cut(s) 324, 470, 542
NlaIV GGNNCC 1 cut(s) 769
PciSI GCTCTTC 1 cut(s) 480
PfeI GAWTC 4 cut(s) 254, 275, 458, 506
PkrI GCNGC 8 cut(s) 54, 205, 208, 211, 214, 217, 220, 514
Psp124BI GAGCTC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 769
PspPI GGNCC 2 cut(s) 50, 58
RsaI GTAC 2 cut(s) 527, 737
RsaNI GTAC 2 cut(s) 526, 736
SacI GAGCTC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 390, 810
SatI GCNGC 8 cut(s) 53, 204, 207, 210, 213, 216, 219, 513
Sau3AI GATC 4 cut(s) 193, 439, 674, 728
Sau96I GGNCC 2 cut(s) 50, 58
SduI GDGCHC 3 cut(s) 42, 165, 245
SfaNI GCATC 3 cut(s) 67, 78, 510
SinI GGWCC 1 cut(s) 58
Sse9I AATT 2 cut(s) 331, 347
SspI AATATT 1 cut(s) 748
SspMI CTAG 1 cut(s) 95
SstI GAGCTC 1 cut(s) 42
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 3 cut(s) 269, 530, 685
TaiI ACGT 1 cut(s) 800
TaqI TCGA 5 cut(s) 29, 192, 363, 673, 727
TasI AATT 2 cut(s) 331, 347
TauI GCSGC 7 cut(s) 55, 206, 209, 212, 215, 218, 221
TfiI GAWTC 4 cut(s) 254, 275, 458, 506
Tru1I TTAA 2 cut(s) 390, 810
Tru9I TTAA 2 cut(s) 390, 810
TscAI CASTG 4 cut(s) 274, 292, 487, 688
TseI GCWGC 1 cut(s) 512
TspDTI ATGAA 3 cut(s) 309, 384, 527
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 4 cut(s) 274, 292, 487, 688
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 347
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.