Rh1DG224100

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012556
Physical Location & Seq
Forward (+)
43466213 .. 43468239
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG224100.1

Sequence Viewer

Length: 336 bp
ATGGACCCTGATGCTATTCGCCGCTGTATGAGTTTTGGGTTTTCAGATAAGAAGTCGAAATCAGCCATTGGCCAATATGGTAATGGCTTCAAGACCAGTACTATGAGACTTGGTGCGGATGTTATTGTATTCAGCCGCCACCAGGATGAGAGGACATTGACTCAAAGCATTGGTCTTCTCTCTTACACGTTTTTGGCACGAACAGGACATGATAGAATAGTAGTACCGATGGTGGATTACGAATTCAACCCTACAACTGAGACATTAGATATAATGCACGGCTTGTCAATTGATGCTTCATATACATTGGTAGTTCTTATCTGCTTCACATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009889 GO:0009892 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0030054 GO:0031047 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031967 GO:0031975 GO:0032101 GO:0032103 GO:0032259 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0055044 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

111

Amino Acids

12.42

Weight (kDa)

6.25

Isoelectric Point (pI)

23.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 1 - 55 6e-08 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 22, 116, 136
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 2 cut(s) 100, 225
AfiI CCNNNNNNNGG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 2 cut(s) 91, 247
AjnI CCWGG 1 cut(s) 141
Alw26I GTCTC 2 cut(s) 100, 254
AoxI GGCC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 157, 189
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 167
BccI CCATC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 100, 254
BisI GCNGC 2 cut(s) 22, 136
BlsI GCNGC 2 cut(s) 23, 137
BmcAI AGTACT 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 124, 151
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 96
BshFI GGCC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 100, 254
BsnI GGCC 1 cut(s) 72
BspACI CCGC 3 cut(s) 22, 116, 136
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 124, 151
BstMAI GTCTC 2 cut(s) 100, 254
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 2 cut(s) 124, 151
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 99, 224
CviAII CATG 2 cut(s) 209, 330
CviJI RGCY 5 cut(s) 65, 72, 87, 135, 282
CviKI_1 RGCY 5 cut(s) 65, 72, 87, 135, 282
CviQI GTAC 2 cut(s) 99, 224
DdeI CTNAG 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 4
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 212, 333
FaiI YATR 8 cut(s) 29, 78, 104, 210, 272, 301, 303, 331
FatI CATG 2 cut(s) 208, 329
Fnu4HI GCNGC 2 cut(s) 22, 136
FokI GGATG 2 cut(s) 131, 158
Fsp4HI GCNGC 2 cut(s) 22, 136
GluI GCNGC 2 cut(s) 22, 136
HaeIII GGCC 1 cut(s) 72
Hin1II CATG 2 cut(s) 212, 333
HinfI GANTC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 2 cut(s) 212, 333
LpnPI CCDG 5 cut(s) 21, 109, 128, 155, 189
LweI GCATC 1 cut(s) 283
MaeII ACGT 1 cut(s) 188
MboII GAAGA 1 cut(s) 167
MfeI CAATTG 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 72
MluCI AATT 2 cut(s) 242, 288
MluNI TGGCCA 1 cut(s) 72
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 72
MscI TGGCCA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 72
MspA1I CMGCKG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 143
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 330
NlaIII CATG 2 cut(s) 212, 333
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 333
PkrI GCNGC 2 cut(s) 23, 137
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 100, 225
RsaNI GTAC 2 cut(s) 99, 224
RseI CAYNNNNRTG 1 cut(s) 144
SatI GCNGC 2 cut(s) 22, 136
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 100
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 143
SetI ASST 1 cut(s) 191
SfaNI GCATC 1 cut(s) 283
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 2 cut(s) 242, 288
SsiI CCGC 3 cut(s) 22, 116, 136
StyD4I CCNGG 1 cut(s) 141
TaiI ACGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 56
TasI AATT 2 cut(s) 242, 288
TatI WGTACW 1 cut(s) 98
TauI GCSGC 2 cut(s) 24, 138
TspDTI ATGAA 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 242
XceI RCATGY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
ZrmI AGTACT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.