Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0012556

Physical Location & Seq

Genomic Coordinates Forward (+)

30242781 .. 30247333

Gene Structure 4553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG159700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCTTGAAAATCAGAAAGACAAAAGCAGAATGTTGCTGATTGAAGATAATGGTGGTGGGATGAATCCAGATAAGATACGAGACTGCATGTCATTGGGGTTTTCTACAAAGAGCAAAATCGCAAACACAATTGGACAATATGGAAATGGTTTTAAAACAAGTACCATGAGGCTTGGGGCAGACGTGATTGTGTTCACTCGTTGTTGTGGAAAAGATGGAAAAAGTGCTACGCAGAGCATTGGATTGCTGTCTTACACATTTTTGAGGAGCACAGGAAAGGAAGATACTGTTGTTCCCATGGTCCACTGGAAACAAGCTTCTGGAATGGTTTTGTCATTGTATAGCAAAAAGAAACTTTGCTACAGCGCTAGCATTCACTTACTAAGAAATCATGTATGTCAATCTTGTTTGTCTATATGTTTGTTGAGAAAGTATATATGTGCCATTGCATTTGCACATATTCTTCTTACACCCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

159

Amino Acids

17.54

Weight (kDa)

9.38

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	4 - 73	2.9e-13	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04272 FvH4_1g04281
rosa_chinensis	RchiOBHm_Chr6g0254811
rosa_laevigata	RLG00000016060
rosa_roxburghii	Rroxscaffold_2G00151550
rosa_rugosa	Rorug01G0212700
rosa_samantha	Rh1AG060600 Rh1AG159700 Rh1BG196100 Rh1CG148900 Rh1DG224100 Rh2BG047700 Rh2BG531100 Rh2CG049800 Rh2DG540100 Rh7CG018700
rosa_wichuraiana	Rw2G004150 Rw2G004160 Rw6G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	163
AfeI	AGCGCT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	8, 44
AhdI	GACNNNNNGTC	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	184
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	75
Aor51HI	AGCGCT	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	301
AsuNHI	GCTAGC	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	301
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
Bbv12I	GWGCWC	1 cut(s)	272
BccI	CCATC	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	361
BfoI	RGCGCY	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	301
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	301
BmtI	GCTAGC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp19I	CCATGG	1 cut(s)	297
BspOI	GCTAGC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	368
BstMAI	GTCTC	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	297
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	4 cut(s)	88, 166, 298, 392
CviJI	RGCY	2 cut(s)	172, 317
CviKI_1	RGCY	2 cut(s)	172, 317
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	383
DraI	TTTAAA	1 cut(s)	154
DriI	GACNNNNNGTC	1 cut(s)	88
Eam1105I	GACNNNNNGTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	301
Eco47III	AGCGCT	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	4 cut(s)	91, 169, 301, 395
FatI	CATG	4 cut(s)	87, 165, 297, 391
FokI	GGATG	1 cut(s)	73
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	367
HaeII	RGCGCY	1 cut(s)	369
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	4 cut(s)	91, 169, 301, 395
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	195, 304
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	2 cut(s)	68, 321
Hpy8I	GTNNAC	2 cut(s)	195, 304
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	87, 449, 455
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	91, 169, 301, 395
HspAI	GCGC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	4 cut(s)	81, 258, 292, 306
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	183
MboII	GAAGA	3 cut(s)	56, 293, 455
MfeI	CAATTG	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	1 cut(s)	129
MnlI	CCTC	2 cut(s)	162, 258
MseI	TTAA	1 cut(s)	153
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	372
NcoI	CCATGG	1 cut(s)	297
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	4 cut(s)	91, 169, 301, 395
NspI	RCATGY	1 cut(s)	91
PctI	GAATGC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	301
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	2 cut(s)	186, 319
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	301
Sse9I	AATT	1 cut(s)	129
SspMI	CTAG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	186
TasI	AATT	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	301
XceI	RCATGY	1 cut(s)	91
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.