Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012556

Physical Location & Seq

Genomic Coordinates Forward (+)

32742099 .. 32746043

Gene Structure 3945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG148900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGACATCATGGGCAGCAAGGCCCATGCCTCAATGCTCCCCAAACAGTTTTGGAAGGCTAGCTGGGGAGTTTGAGGTAGTGCCTTGTGGCGATGCGGATTCTTCTACTGTCGGGATGGACCATGTGAGGATTCATCCCAAGTTTCTGCATTCCAATGCAACCAGTCATAAGTGGGCTCTTGGAGCTTTTGCGAAGCTATTAGACAATGCAATAGATGAGGTTTGCATTGGTGCTACTTATGTTAAGGTAGATATGCTTGAAAATCAGAAAGACAAAAGCAGAATGTTGCTGATTGAAGATAATGGTGGTGGGATGAATCCAGATAAGATACGAGACTGCATGTCATTGGGGTTTTCTACAAAGAGCAAAATCGCAAACACAATTGGACAATATGGAAATGGTTTTAAAACAAGTACCATGAGGCTTGGGGCAGACGTGATTGTGTTCACTCGTTGTTGTGGAAAAGATGGAAAAAGTGCTACGCAGAGCATTGGATTGCTGTCTTACACATTTTTGAGGAGCACAGGAAAGGAAGATACTGTTGTTCCCATGGTCCACTGGAAACAAGCTTCTGGAATGGTTTTGTCATTGTATAGCAAAAAGAAACTTTGCTACAGCGCTAGCATTCACTTACTAAGAAATCATATACTGAATCTGCCAAAGCATCGAGACAGCAGCTCAAAGAAGCCAAAAAAAAAGCTGGAGTTTCCTAGGCATAAGCTAGCATACAGTTACTTTGGTGCTGCAATTCTTTCTCCTCCTGAACTAGTACATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

259

Amino Acids

28.6

Weight (kDa)

9.51

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	61 - 157	3.5e-16	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	63 - 141	1e-05	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04272 FvH4_1g04281
rosa_chinensis	RchiOBHm_Chr6g0254811
rosa_laevigata	RLG00000016060
rosa_roxburghii	Rroxscaffold_2G00151550
rosa_rugosa	Rorug01G0212700
rosa_samantha	Rh1AG060600 Rh1AG159700 Rh1BG196100 Rh1CG148900 Rh1DG224100 Rh2BG047700 Rh2BG531100 Rh2CG049800 Rh2DG540100 Rh7CG018700
rosa_wichuraiana	Rw2G004150 Rw2G004160 Rw6G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AfaI	GTAC	2 cut(s)	415, 771
AfeI	AGCGCT	1 cut(s)	619
AgsI	TTSAA	2 cut(s)	260, 296
AhdI	GACNNNNNGTC	1 cut(s)	340
AhlI	ACTAGT	1 cut(s)	766
AjiI	CACGTC	1 cut(s)	436
AluBI	AGCT	7 cut(s)	62, 185, 196, 569, 678, 700, 721
AluI	AGCT	7 cut(s)	62, 185, 196, 569, 678, 700, 721
Alw21I	GWGCWC	1 cut(s)	524
Alw26I	GTCTC	2 cut(s)	327, 663
Aor51HI	AGCGCT	1 cut(s)	619
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	14, 675, 743
AspA2I	CCTAGG	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	620
AspS9I	GGNCC	3 cut(s)	21, 118, 553
AsuNHI	GCTAGC	3 cut(s)	58, 620, 721
AvaII	GGWCC	2 cut(s)	118, 553
AvrII	CCTAGG	1 cut(s)	710
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	524
BbvI	GCAGC	3 cut(s)	26, 687, 730
BccI	CCATC	2 cut(s)	109, 461
BcoDI	GTCTC	2 cut(s)	327, 663
BcuI	ACTAGT	1 cut(s)	766
BfaI	CTAG	5 cut(s)	59, 621, 711, 722, 767
BfmI	CTRYAG	1 cut(s)	613
BfoI	RGCGCY	1 cut(s)	621
BisI	GCNGC	3 cut(s)	15, 676, 744
BlnI	CCTAGG	1 cut(s)	710
BlsI	GCNGC	3 cut(s)	16, 677, 745
Bme18I	GGWCC	2 cut(s)	118, 553
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmgBI	CACGTC	1 cut(s)	436
BmgT120I	GGNCC	3 cut(s)	21, 118, 553
BmsI	GCATC	2 cut(s)	82, 673
BmtI	GCTAGC	3 cut(s)	62, 624, 725
BpmI	CTGGAG	1 cut(s)	722
BsaJI	CCNNGG	2 cut(s)	549, 710
Bse1I	ACTGG	2 cut(s)	162, 563
BseDI	CCNNGG	2 cut(s)	549, 710
BseGI	GGATG	3 cut(s)	120, 133, 318
BseNI	ACTGG	2 cut(s)	162, 563
BseRI	GAGGAG	2 cut(s)	532, 747
BseXI	GCAGC	3 cut(s)	26, 687, 730
BseYI	CCCAGC	1 cut(s)	62
BshFI	GGCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	524
BsmAI	GTCTC	2 cut(s)	327, 663
BsmI	GAATGC	2 cut(s)	148, 624
BsnI	GGCC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	178, 524
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	22
BspOI	GCTAGC	3 cut(s)	62, 624, 725
BsrI	ACTGG	2 cut(s)	162, 563
BssECI	CCNNGG	2 cut(s)	549, 710
BssT1I	CCWWGG	2 cut(s)	549, 710
Bst4CI	ACNGT	4 cut(s)	47, 109, 541, 731
BstC8I	GCNNGC	3 cut(s)	60, 622, 723
BstDEI	CTNAG	1 cut(s)	635
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	3 cut(s)	120, 133, 318
BstH2I	RGCGCY	1 cut(s)	621
BstHHI	GCGC	1 cut(s)	620
BstMAI	GTCTC	2 cut(s)	327, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	613
BstV1I	GCAGC	3 cut(s)	26, 687, 730
BsuRI	GGCC	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	549
BtgZI	GCGATG	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	3 cut(s)	120, 133, 318
BtsIMutI	CAGTG	1 cut(s)	556
Cac8I	GCNNGC	3 cut(s)	60, 622, 723
CfoI	GCGC	1 cut(s)	620
Cfr13I	GGNCC	3 cut(s)	21, 118, 553
Csp6I	GTAC	2 cut(s)	414, 770
CviAII	CATG	6 cut(s)	9, 25, 122, 340, 418, 550
CviQI	GTAC	2 cut(s)	414, 770
DdeI	CTNAG	1 cut(s)	635
DraI	TTTAAA	1 cut(s)	406
DriI	GACNNNNNGTC	1 cut(s)	340
Eam1105I	GACNNNNNGTC	1 cut(s)	340
Eco130I	CCWWGG	2 cut(s)	549, 710
Eco24I	GRGCYC	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	118, 553
Eco47III	AGCGCT	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	549, 710
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	549, 710
FaeI	CATG	6 cut(s)	12, 28, 125, 343, 421, 553
FatI	CATG	6 cut(s)	8, 24, 121, 339, 417, 549
Fnu4HI	GCNGC	3 cut(s)	15, 676, 744
FokI	GGATG	3 cut(s)	120, 127, 325
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	3 cut(s)	15, 676, 744
FspBI	CTAG	5 cut(s)	59, 621, 711, 722, 767
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	3 cut(s)	15, 676, 744
GsaI	CCCAGC	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	722
HaeII	RGCGCY	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	620
Hin1II	CATG	6 cut(s)	12, 28, 125, 343, 421, 553
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	4 cut(s)	98, 130, 316, 652
Hpy166II	GTNNAC	2 cut(s)	447, 556
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	5 cut(s)	112, 320, 573, 668, 761
Hpy8I	GTNNAC	2 cut(s)	447, 556
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	4 cut(s)	47, 109, 541, 731
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	6 cut(s)	148, 158, 209, 225, 339, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	635
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	6 cut(s)	12, 28, 125, 343, 421, 553
HspAI	GCGC	1 cut(s)	618
LmnI	GCTCC	3 cut(s)	41, 182, 519
LpnPI	CCDG	8 cut(s)	48, 175, 333, 510, 544, 558, 686, 774
Lsp1109I	GCAGC	3 cut(s)	26, 687, 730
LweI	GCATC	2 cut(s)	82, 673
MaeI	CTAG	5 cut(s)	59, 621, 711, 722, 767
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	731
MboII	GAAGA	3 cut(s)	93, 308, 545
MfeI	CAATTG	1 cut(s)	381
MhlI	GDGCHC	2 cut(s)	178, 524
MluCI	AATT	2 cut(s)	381, 747
MnlI	CCTC	7 cut(s)	39, 67, 120, 211, 414, 510, 768
MseI	TTAA	2 cut(s)	243, 405
MslI	CAYNNNNRTG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	2 cut(s)	148, 624
MwoI	GCNNNNNNNGC	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	549
NheI	GCTAGC	3 cut(s)	58, 620, 721
NlaIII	CATG	6 cut(s)	12, 28, 125, 343, 421, 553
NspI	RCATGY	1 cut(s)	343
PctI	GAATGC	2 cut(s)	148, 624
PfeI	GAWTC	4 cut(s)	98, 130, 316, 652
PkrI	GCNGC	3 cut(s)	16, 677, 745
PspFI	CCCAGC	1 cut(s)	62
PspPI	GGNCC	3 cut(s)	21, 118, 553
RsaI	GTAC	2 cut(s)	415, 771
RsaNI	GTAC	2 cut(s)	414, 770
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	243, 405
SatI	GCNGC	3 cut(s)	15, 676, 744
Sau96I	GGNCC	3 cut(s)	21, 118, 553
SduI	GDGCHC	2 cut(s)	178, 524
SfaNI	GCATC	2 cut(s)	82, 673
SfcI	CTRYAG	1 cut(s)	613
SinI	GGWCC	2 cut(s)	118, 553
SmiMI	CAYNNNNRTG	1 cut(s)	153
SpeI	ACTAGT	1 cut(s)	766
Sse9I	AATT	2 cut(s)	381, 747
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	5 cut(s)	59, 621, 711, 722, 767
StyI	CCWWGG	2 cut(s)	549, 710
TaaI	ACNGT	4 cut(s)	47, 109, 541, 731
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	1 cut(s)	667
TasI	AATT	2 cut(s)	381, 747
TatI	WGTACW	1 cut(s)	769
TfiI	GAWTC	4 cut(s)	98, 130, 316, 652
Tru1I	TTAA	2 cut(s)	243, 405
Tru9I	TTAA	2 cut(s)	243, 405
TscAI	CASTG	1 cut(s)	563
TseI	GCWGC	3 cut(s)	14, 675, 743
TspDTI	ATGAA	2 cut(s)	122, 329
TspRI	CASTG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	118, 553
XceI	RCATGY	1 cut(s)	343
XmaJI	CCTAGG	1 cut(s)	710
XspI	CTAG	5 cut(s)	59, 621, 711, 722, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.