Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012556

Physical Location & Seq

Genomic Coordinates Reverse (-)

2286872 .. 2287525

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04281.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCTGGGGCTAGGGCAACTACTGTGCATGTGGTACAGCTCCCAAAATGCTCAGATAAGATAAAGATTAGGGTAATGCAGAGAGTGATCCGAAATATGGTCACATCTAGTGATGAGCTATATGAGATGGATGTAAAAGTCCATCCAAGGCTGCATACCCTCAAAAGGATTAGAGAGAAGTTGGAGATTGCAGCAAATTTGAGAGGTTGGCCTCTGCCAATAAATGACTACACTTTTAGGCATCAACCTCTCAATGACGATGATGCTGATAATGATGGTGTAGAATTGATCGAGGGTGGGGGGAGGACCTTCCAGAAACTAGGGATCAATGATGGTGATGCTATCATGGTGGTACCGGTGCCTTTCAGTTTCAAAGTAAGCATTGCTGGAATGGGCGTGGATGCGATCTTGGTGGAAATTAGGTCATCAGACAAGGAGGTGACTTTAAGACAAGTGTTGCAAAGGCGTCATACTGAAAATCTACCAACGCATTTTCAGTTCTCCTTCGGAGAGATATTGATGGATGATGAAATGCCATTTCATTTGTATGGCCTTCGCAAGGGTGATCGCATAAGAGTGACCCCTCAATCTGCCTCTCAAACTTCTGCTCTTGATCGAACTGGGAACACCCAAGAAGCACAAACAAACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.6

Weight (kDa)

6.66

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04272 FvH4_1g04281
rosa_chinensis	RchiOBHm_Chr6g0254811
rosa_laevigata	RLG00000016060
rosa_roxburghii	Rroxscaffold_2G00151550
rosa_rugosa	Rorug01G0212700
rosa_samantha	Rh1AG060600 Rh1AG159700 Rh1BG196100 Rh1CG148900 Rh1DG224100 Rh2BG047700 Rh2BG531100 Rh2CG049800 Rh2DG540100 Rh7CG018700
rosa_wichuraiana	Rw2G004150 Rw2G004160 Rw6G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	2 cut(s)	352, 358
AclWI	GGATC	2 cut(s)	82, 332
AcsI	RAATTY	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	466
AfaI	GTAC	2 cut(s)	36, 354
AfiI	CCNNNNNNNGG	3 cut(s)	97, 165, 559
AgeI	ACCGGT	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	373
AluBI	AGCT	2 cut(s)	40, 118
AluI	AGCT	2 cut(s)	40, 118
AlwI	GGATC	2 cut(s)	82, 332
AoxI	GGCC	2 cut(s)	209, 550
ApeKI	GCWGC	2 cut(s)	151, 191
ApoI	RAATTY	1 cut(s)	196
AsiGI	ACCGGT	1 cut(s)	355
Asp718I	GGTACC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	347, 451, 575
AvaII	GGWCC	1 cut(s)	306
BanI	GGYRCC	2 cut(s)	352, 358
BbvI	GCAGC	2 cut(s)	138, 203
BccI	CCATC	5 cut(s)	121, 150, 269, 326, 514
BfaI	CTAG	3 cut(s)	12, 108, 320
BisI	GCNGC	2 cut(s)	152, 192
BlsI	GCNGC	2 cut(s)	153, 193
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	2 cut(s)	354, 360
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	4 cut(s)	250, 253, 328, 391
BmuI	ACTGGG	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 165, 559
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	625
Bse3DI	GCAATG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	4 cut(s)	136, 142, 406, 529
BseLI	CCNNNNNNNGG	3 cut(s)	97, 165, 559
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	625
BseXI	GCAGC	2 cut(s)	138, 203
BshFI	GGCC	2 cut(s)	211, 552
BshNI	GGYRCC	2 cut(s)	352, 358
BshTI	ACCGGT	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	356
BslI	CCNNNNNNNGG	3 cut(s)	97, 165, 559
BsnI	GGCC	2 cut(s)	211, 552
Bsp143I	GATC	6 cut(s)	87, 288, 324, 405, 565, 613
BspANI	GGCC	2 cut(s)	211, 552
BspCNI	CTCAG	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	354, 360
BspPI	GGATC	2 cut(s)	82, 332
BspT107I	GGYRCC	2 cut(s)	352, 358
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	625
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	6 cut(s)	87, 288, 324, 405, 565, 613
BssNI	GRCGYC	1 cut(s)	466
BssT1I	CCWWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	466
BstDEI	CTNAG	1 cut(s)	52
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	4 cut(s)	136, 142, 406, 529
BstKTI	GATC	6 cut(s)	90, 291, 327, 408, 568, 616
BstMBI	GATC	6 cut(s)	87, 288, 324, 405, 565, 613
BstNSI	RCATGY	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	138, 203
BsuRI	GGCC	2 cut(s)	211, 552
BtsCI	GGATG	4 cut(s)	136, 142, 406, 529
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	306
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	35, 353
CspAI	ACCGGT	1 cut(s)	355
CviAII	CATG	2 cut(s)	29, 346
CviJI	RGCY	6 cut(s)	11, 40, 118, 151, 211, 552
CviKI_1	RGCY	6 cut(s)	11, 40, 118, 151, 211, 552
CviQI	GTAC	2 cut(s)	35, 353
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	6 cut(s)	89, 290, 326, 407, 567, 615
DpnII	GATC	6 cut(s)	87, 288, 324, 405, 565, 613
Eco130I	CCWWGG	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	2 cut(s)	32, 349
FaiI	YATR	9 cut(s)	30, 98, 121, 123, 156, 347, 471, 549, 572
FatI	CATG	2 cut(s)	28, 345
Fnu4HI	GCNGC	2 cut(s)	152, 192
FokI	GGATG	4 cut(s)	129, 143, 413, 536
Fsp4HI	GCNGC	2 cut(s)	152, 192
FspBI	CTAG	3 cut(s)	12, 108, 320
GluI	GCNGC	2 cut(s)	152, 192
HaeIII	GGCC	2 cut(s)	211, 552
HapII	CCGG	1 cut(s)	356
HgaI	GACGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	466
Hin1II	CATG	2 cut(s)	32, 349
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	3 cut(s)	347, 451, 575
Hpy188I	TCNGA	4 cut(s)	55, 92, 430, 509
Hpy188III	TCNNGA	2 cut(s)	313, 611
HpyAV	CCTTC	3 cut(s)	319, 514, 563
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	5 cut(s)	28, 79, 154, 191, 460
HpyF3I	CTNAG	1 cut(s)	52
Hsp92I	GRCGYC	1 cut(s)	466
Hsp92II	CATG	2 cut(s)	32, 349
KpnI	GGTACC	1 cut(s)	356
Kzo9I	GATC	6 cut(s)	87, 288, 324, 405, 565, 613
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	4 cut(s)	326, 369, 372, 606
Lsp1109I	GCAGC	2 cut(s)	138, 203
LweI	GCATC	4 cut(s)	250, 253, 328, 391
MaeI	CTAG	3 cut(s)	12, 108, 320
MaeIII	GTNAC	3 cut(s)	100, 439, 577
MalI	GATC	6 cut(s)	89, 290, 326, 407, 567, 615
MboI	GATC	6 cut(s)	87, 288, 324, 405, 565, 613
MluCI	AATT	3 cut(s)	196, 284, 417
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	9 cut(s)	170, 197, 222, 258, 286, 297, 430, 594, 604
MseI	TTAA	2 cut(s)	446, 652
MslI	CAYNNNNRTG	2 cut(s)	546, 575
MspI	CCGG	1 cut(s)	356
NdeII	GATC	6 cut(s)	87, 288, 324, 405, 565, 613
NlaIII	CATG	2 cut(s)	32, 349
NlaIV	GGNNCC	2 cut(s)	354, 360
NmuCI	GTSAC	3 cut(s)	100, 439, 577
NspI	RCATGY	1 cut(s)	32
PinAI	ACCGGT	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	153, 193
PpuMI	RGGWCCY	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	354, 360
PspPI	GGNCC	1 cut(s)	306
PspPPI	RGGWCCY	1 cut(s)	306
RsaI	GTAC	2 cut(s)	36, 354
RsaNI	GTAC	2 cut(s)	35, 353
RseI	CAYNNNNRTG	2 cut(s)	546, 575
SaqAI	TTAA	2 cut(s)	446, 652
SatI	GCNGC	2 cut(s)	152, 192
Sau3AI	GATC	6 cut(s)	87, 288, 324, 405, 565, 613
Sau96I	GGNCC	1 cut(s)	306
SetI	ASST	7 cut(s)	42, 120, 208, 250, 311, 425, 441
SfaNI	GCATC	4 cut(s)	250, 253, 328, 391
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	2 cut(s)	546, 575
Sse9I	AATT	3 cut(s)	196, 284, 417
SspMI	CTAG	3 cut(s)	12, 108, 320
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	291, 616
TasI	AATT	3 cut(s)	196, 284, 417
Tru1I	TTAA	2 cut(s)	446, 652
Tru9I	TTAA	2 cut(s)	446, 652
TseFI	GTSAC	3 cut(s)	100, 439, 577
TseI	GCWGC	2 cut(s)	151, 191
Tsp45I	GTSAC	3 cut(s)	100, 439, 577
TspDTI	ATGAA	2 cut(s)	530, 543
VpaK11BI	GGWCC	1 cut(s)	306
XagI	CCTNNNNNAGG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	32
XspI	CTAG	3 cut(s)	12, 108, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.