Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0012556

Physical Location & Seq

Genomic Coordinates Forward (+)

3948723 .. 3959854

Gene Structure 11132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGCATGGATGCAATTCCGGTGAACATCCAGCCATCGGACAAGGTAGTGACTTTGAGAGAGGAGTTGCAAAGACGCCAAACTCAAAATCTCCCAACTTATTTTATGTTTTCCTTCGGACATGTGTTGATGAAAGATGACATGCCGTTTCAGTTGTATGGCTTATGCCGGGGGGCTCGCGTCAGAGTCACTCCTCAATCTGCCCCTGAAACTTCTGATCCTGATCGACCTGGGGACACCGAGGAACAATTTTGGAAGGCTGAGGAGTTTGAGGTAGTGCCTTGTGGCGATGCGGATTCTTCTGCTGGCGGGATGGACCATGTGAGGATTTATCCCAAGTTTCTGCATTCCAATGCAACCAGTCATAAGTGGGCTCTTGGAGCTTTTGCGGAGCTATTAGACAATGCAATAGATGAGGTTTGCACTGGTGCTACTTATGTTAAGGTAGATATGCTTGAAAATCAGAAAGACGGAAGCAGAATGTTGCTGATTGAAGATAATGGTGGTGGGATGAATCCAGATAAGATACGAGACTGCATGTCATTGGGGTTTTCTACAAAAAGCAAAATCGCAAACACAATTGGACAATGTATAGAACTAGAATTTAACCAAAGTACTTTTCGTTTAAAACCCTTCTCCAAACAATCATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

217

Amino Acids

24.29

Weight (kDa)

5.05

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	127 - 189	1.9e-08	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	128 - 190	3.1e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04272 FvH4_1g04281
rosa_chinensis	RchiOBHm_Chr6g0254811
rosa_laevigata	RLG00000016060
rosa_roxburghii	Rroxscaffold_2G00151550
rosa_rugosa	Rorug01G0212700
rosa_samantha	Rh1AG060600 Rh1AG159700 Rh1BG196100 Rh1CG148900 Rh1DG224100 Rh2BG047700 Rh2BG531100 Rh2CG049800 Rh2DG540100 Rh7CG018700
rosa_wichuraiana	Rw2G004150 Rw2G004160 Rw6G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	180
AciI	CCGC	3 cut(s)	293, 309, 389
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	602
AcyI	GRCGYC	1 cut(s)	76
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	458, 494
AhdI	GACNNNNNGTC	1 cut(s)	538
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AluBI	AGCT	2 cut(s)	383, 394
AluI	AGCT	2 cut(s)	383, 394
Alw26I	GTCTC	1 cut(s)	525
AlwI	GGATC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	602
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	316
BanII	GRGCYC	2 cut(s)	178, 376
BbvCI	CCTCAGC	1 cut(s)	261
BccI	CCATC	2 cut(s)	43, 307
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	525
BfaI	CTAG	1 cut(s)	599
BmcAI	AGTACT	1 cut(s)	616
Bme1390I	CCNGG	2 cut(s)	170, 231
Bme18I	GGWCC	1 cut(s)	316
BmeRI	GACNNNNNGTC	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	170, 231
BmsI	GCATC	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	76
BsaJI	CCNNGG	3 cut(s)	169, 230, 240
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	360, 430
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	169, 230, 240
BseGI	GGATG	4 cut(s)	16, 27, 318, 516
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	360, 430
BseRI	GAGGAG	3 cut(s)	77, 183, 278
Bsh1236I	CGCG	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	20, 169
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	178, 376
Bsp143I	GATC	2 cut(s)	217, 223
BspACI	CCGC	3 cut(s)	293, 309, 389
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	180
BspPI	GGATC	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	360, 430
BssECI	CCNNGG	3 cut(s)	169, 230, 240
BssMI	GATC	2 cut(s)	217, 223
BssNI	GRCGYC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	178, 307
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	4 cut(s)	16, 27, 318, 516
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	2 cut(s)	220, 226
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	2 cut(s)	217, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	3 cut(s)	125, 145, 541
BstSCI	CCNGG	2 cut(s)	168, 229
BstUI	CGCG	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	4 cut(s)	16, 27, 318, 516
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	2 cut(s)	178, 307
Cfr13I	GGNCC	1 cut(s)	316
CseI	GACGC	2 cut(s)	84, 169
Csp6I	GTAC	1 cut(s)	615
CviAII	CATG	6 cut(s)	7, 122, 142, 320, 538, 648
CviJI	RGCY	7 cut(s)	34, 162, 176, 260, 374, 383, 394
CviKI_1	RGCY	7 cut(s)	34, 162, 176, 260, 374, 383, 394
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	2 cut(s)	219, 225
DpnII	GATC	2 cut(s)	217, 223
DraI	TTTAAA	1 cut(s)	627
DriI	GACNNNNNGTC	1 cut(s)	538
Eam1105I	GACNNNNNGTC	1 cut(s)	538
Eco24I	GRGCYC	2 cut(s)	178, 376
Eco47I	GGWCC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	229
EcoT38I	GRGCYC	2 cut(s)	178, 376
FaeI	CATG	6 cut(s)	10, 125, 145, 323, 541, 651
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	6 cut(s)	6, 121, 141, 319, 537, 647
FauI	CCCGC	1 cut(s)	302
FokI	GGATG	4 cut(s)	14, 23, 325, 523
FriOI	GRGCYC	2 cut(s)	178, 376
FspBI	CTAG	1 cut(s)	599
HapII	CCGG	2 cut(s)	20, 169
HgaI	GACGC	2 cut(s)	84, 169
Hin1I	GRCGYC	1 cut(s)	76
Hin1II	CATG	6 cut(s)	10, 125, 145, 323, 541, 651
HinfI	GANTC	3 cut(s)	186, 296, 514
HpaII	CCGG	2 cut(s)	20, 169
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	5 cut(s)	40, 119, 185, 217, 465
Hpy188III	TCNNGA	2 cut(s)	221, 518
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	3 cut(s)	124, 250, 643
HpyCH4V	TGCA	7 cut(s)	14, 70, 346, 356, 407, 423, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	76
Hsp92II	CATG	6 cut(s)	10, 125, 145, 323, 541, 651
Kzo9I	GATC	2 cut(s)	217, 223
LmnI	GCTCC	2 cut(s)	380, 391
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	599
MaeIII	GTNAC	2 cut(s)	49, 187
MalI	GATC	2 cut(s)	219, 225
MboI	GATC	2 cut(s)	217, 223
MboII	GAAGA	2 cut(s)	291, 506
MfeI	CAATTG	1 cut(s)	579
MhlI	GDGCHC	2 cut(s)	178, 376
MluCI	AATT	4 cut(s)	15, 248, 579, 602
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	7 cut(s)	55, 204, 235, 256, 265, 318, 409
MseI	TTAA	3 cut(s)	441, 606, 626
MslI	CAYNNNNRTG	1 cut(s)	351
MspI	CCGG	2 cut(s)	20, 169
MspR9I	CCNGG	2 cut(s)	170, 231
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	380
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	217, 223
NlaIII	CATG	6 cut(s)	10, 125, 145, 323, 541, 651
NmuCI	GTSAC	2 cut(s)	49, 187
NspI	RCATGY	3 cut(s)	125, 145, 541
PciI	ACATGT	1 cut(s)	121
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	296, 514
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PscI	ACATGT	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	316
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	441, 606, 626
Sau3AI	GATC	2 cut(s)	217, 223
Sau96I	GGNCC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	616
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	170, 231
SduI	GDGCHC	2 cut(s)	178, 376
SetI	ASST	7 cut(s)	48, 232, 276, 385, 396, 420, 447
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	4 cut(s)	15, 248, 579, 602
SsiI	CCGC	3 cut(s)	293, 309, 389
SspMI	CTAG	1 cut(s)	599
StyD4I	CCNGG	2 cut(s)	168, 229
TaqI	TCGA	1 cut(s)	226
TasI	AATT	4 cut(s)	15, 248, 579, 602
TatI	WGTACW	1 cut(s)	614
TfiI	GAWTC	2 cut(s)	296, 514
Tru1I	TTAA	3 cut(s)	441, 606, 626
Tru9I	TTAA	3 cut(s)	441, 606, 626
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	2 cut(s)	49, 187
Tsp45I	GTSAC	2 cut(s)	49, 187
TspDTI	ATGAA	2 cut(s)	146, 527
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	316
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	3 cut(s)	125, 145, 541
XspI	CTAG	1 cut(s)	599
ZrmI	AGTACT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.