Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012556

Physical Location & Seq

Genomic Coordinates Reverse (-)

3587027 .. 3587617

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016060

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGATAAAGGTGAAAGTGATGCAGAAAGTGATGCAAAATATGGTCACCTCTACTGATGATATATATGAGATGGAAATAGAAGTCCACCCCATGCAGACACTGAAAAAGATTAGGGAGAAGTTGGCGACGGCAGAAAATTTGAGAGGCTGGCCTCTCCCGACAAATGGATATTCGTTTCGGCGTCAACCTCTCCCCAGTAACCATGATGATAACGGTGAAGACTTGCTTGAGGGTGGGGGGAGAACCTTCCGAAAACTCGGAATAAGAAATGGTGATACTATCCTGGTGGTACCATCCAGTTTCCAAGTGAACATAACTGGGATGGGCATGGATGCAATTTCGGTGAACATCCAGCCATCGGACAAGGTAGTGACTTTGAGAGAGGAGTTGCAAAGACGCCAAACTCAAAATCTCCCAACTTATTTTAAGTTTTCCTTCGGACATGTGTTGATGAACGATGACATGCCGTTTCAGTTGTATGGCTTATGCCGGGGGGCTCACGTCAGAGTCACTCCTCAATCTGCCCCTGAAACTACTGATCCTGATCGACCTGGGAACACCGAGGAACAAGTACTAGAAACAGGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

22.23

Weight (kDa)

5.83

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04272 FvH4_1g04281
rosa_chinensis	RchiOBHm_Chr6g0254811
rosa_laevigata	RLG00000016060
rosa_roxburghii	Rroxscaffold_2G00151550
rosa_rugosa	Rorug01G0212700
rosa_samantha	Rh1AG060600 Rh1AG159700 Rh1BG196100 Rh1CG148900 Rh1DG224100 Rh2BG047700 Rh2BG531100 Rh2CG049800 Rh2DG540100 Rh7CG018700
rosa_wichuraiana	Rw2G004150 Rw2G004160 Rw6G010670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	289
AclWI	GGATC	1 cut(s)	533
AcsI	RAATTY	1 cut(s)	136
AcyI	GRCGYC	2 cut(s)	181, 397
AfaI	GTAC	2 cut(s)	291, 573
AfiI	CCNNNNNNNGG	2 cut(s)	164, 358
AflIII	ACRYGT	1 cut(s)	442
AjiI	CACGTC	1 cut(s)	502
AjnI	CCWGG	2 cut(s)	282, 550
AlwI	GGATC	1 cut(s)	533
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	136
Asp718I	GGTACC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	5 cut(s)	22, 37, 227, 284, 355
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	225
BccI	CCATC	4 cut(s)	64, 301, 316, 364
BceAI	ACGGC	2 cut(s)	144, 451
BciT130I	CCWGG	2 cut(s)	284, 552
BcnI	CCSGG	1 cut(s)	491
BfaI	CTAG	1 cut(s)	575
BmcAI	AGTACT	1 cut(s)	573
Bme1390I	CCNGG	3 cut(s)	284, 491, 552
BmgBI	CACGTC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	3 cut(s)	284, 491, 552
BmrI	ACTGGG	2 cut(s)	189, 327
BmsI	GCATC	3 cut(s)	9, 21, 322
BmuI	ACTGGG	2 cut(s)	189, 327
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	491
BsaBI	GATNNNNATC	1 cut(s)	543
BsaHI	GRCGYC	2 cut(s)	181, 397
BsaJI	CCNNGG	3 cut(s)	490, 551, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 358
Bse1I	ACTGG	3 cut(s)	195, 297, 322
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	284, 552
BseDI	CCNNGG	3 cut(s)	490, 551, 561
BseGI	GGATG	4 cut(s)	293, 327, 337, 348
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	2 cut(s)	164, 358
BseNI	ACTGG	3 cut(s)	195, 297, 322
BseRI	GAGGAG	2 cut(s)	398, 504
BshFI	GGCC	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	490
BslI	CCNNNNNNNGG	2 cut(s)	164, 358
BsnI	GGCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp143I	GATC	2 cut(s)	538, 544
BspANI	GGCC	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	289
BsrI	ACTGG	3 cut(s)	195, 297, 322
BssECI	CCNNGG	3 cut(s)	490, 551, 561
BssMI	GATC	2 cut(s)	538, 544
BssNI	GRCGYC	2 cut(s)	181, 397
Bst2UI	CCWGG	2 cut(s)	284, 552
Bst4CI	ACNGT	1 cut(s)	215
BstACI	GRCGYC	2 cut(s)	181, 397
BstC8I	GCNNGC	1 cut(s)	149
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	4 cut(s)	293, 327, 337, 348
BstKTI	GATC	2 cut(s)	541, 547
BstMBI	GATC	2 cut(s)	538, 544
BstNI	CCWGG	2 cut(s)	284, 552
BstNSI	RCATGY	2 cut(s)	446, 466
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	282, 489, 550
BstV2I	GAAGAC	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	502
BtsCI	GGATG	4 cut(s)	293, 327, 337, 348
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	149
CaiI	CAGNNNCTG	1 cut(s)	100
CseI	GACGC	2 cut(s)	170, 405
Csp6I	GTAC	2 cut(s)	290, 572
CviAII	CATG	5 cut(s)	91, 203, 328, 443, 463
CviJI	RGCY	6 cut(s)	147, 151, 355, 483, 497, 585
CviKI_1	RGCY	6 cut(s)	147, 151, 355, 483, 497, 585
CviQI	GTAC	2 cut(s)	290, 572
DpnI	GATC	2 cut(s)	540, 546
DpnII	GATC	2 cut(s)	538, 544
Eco24I	GRGCYC	1 cut(s)	499
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	282, 550
EcoT38I	GRGCYC	1 cut(s)	499
FaeI	CATG	5 cut(s)	94, 206, 331, 446, 466
FalI	AAGNNNNNCTT	4 cut(s)	210, 242, 419, 451
FatI	CATG	5 cut(s)	90, 202, 327, 442, 462
FokI	GGATG	4 cut(s)	280, 334, 335, 344
FriOI	GRGCYC	1 cut(s)	499
FspBI	CTAG	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	1 cut(s)	490
HgaI	GACGC	2 cut(s)	170, 405
Hin1I	GRCGYC	2 cut(s)	181, 397
Hin1II	CATG	5 cut(s)	94, 206, 331, 446, 466
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HinfI	GANTC	1 cut(s)	507
HpaII	CCGG	1 cut(s)	490
HphI	GGTGA	5 cut(s)	22, 37, 227, 284, 355
Hpy166II	GTNNAC	4 cut(s)	85, 185, 310, 346
Hpy188I	TCNGA	5 cut(s)	251, 260, 361, 440, 506
Hpy188III	TCNNGA	2 cut(s)	157, 542
Hpy8I	GTNNAC	4 cut(s)	85, 185, 310, 346
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	256, 445
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	5 cut(s)	22, 34, 94, 335, 391
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	2 cut(s)	181, 397
Hsp92II	CATG	5 cut(s)	94, 206, 331, 446, 466
KpnI	GGTACC	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	538, 544
LweI	GCATC	3 cut(s)	9, 21, 322
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	4 cut(s)	43, 197, 370, 508
MalI	GATC	2 cut(s)	540, 546
MboI	GATC	2 cut(s)	538, 544
MboII	GAAGA	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	2 cut(s)	136, 336
MlyI	GAGTC	1 cut(s)	516
MnlI	CCTC	8 cut(s)	58, 137, 162, 198, 223, 376, 525, 556
MseI	TTAA	2 cut(s)	426, 589
MspI	CCGG	1 cut(s)	490
MspR9I	CCNGG	3 cut(s)	284, 491, 552
MvaI	CCWGG	2 cut(s)	284, 552
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	2 cut(s)	538, 544
NlaIII	CATG	5 cut(s)	94, 206, 331, 446, 466
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	3 cut(s)	43, 370, 508
NspI	RCATGY	2 cut(s)	446, 466
PciI	ACATGT	1 cut(s)	442
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
PscI	ACATGT	1 cut(s)	442
Psp6I	CCWGG	2 cut(s)	282, 550
PspEI	GGTNACC	1 cut(s)	43
PspGI	CCWGG	2 cut(s)	282, 550
PspN4I	GGNNCC	1 cut(s)	291
PstNI	CAGNNNCTG	1 cut(s)	100
RsaI	GTAC	2 cut(s)	291, 573
RsaNI	GTAC	2 cut(s)	290, 572
SaqAI	TTAA	2 cut(s)	426, 589
Sau3AI	GATC	2 cut(s)	538, 544
ScaI	AGTACT	1 cut(s)	573
SchI	GAGTC	1 cut(s)	516
ScrFI	CCNGG	3 cut(s)	284, 491, 552
SduI	GDGCHC	1 cut(s)	499
SetI	ASST	7 cut(s)	12, 50, 190, 248, 369, 504, 553
SfaNI	GCATC	3 cut(s)	9, 21, 322
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	136, 336
SspMI	CTAG	1 cut(s)	575
StyD4I	CCNGG	3 cut(s)	282, 489, 550
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	1 cut(s)	547
TasI	AATT	2 cut(s)	136, 336
TatI	WGTACW	1 cut(s)	571
Tru1I	TTAA	2 cut(s)	426, 589
Tru9I	TTAA	2 cut(s)	426, 589
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	3 cut(s)	43, 370, 508
Tsp45I	GTSAC	3 cut(s)	43, 370, 508
TspDTI	ATGAA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	136
XceI	RCATGY	2 cut(s)	446, 466
XspI	CTAG	1 cut(s)	575
ZrmI	AGTACT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.