FvH4_1g04310
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
2304681 .. 2310134
5454 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04310.t5

Sequence Viewer

Length: 1503 bp
ATGTGGGTCCGCCAACGTGAAGCATACTCGATGTACAAGCGGTTGTCATCGAGAGATTATTTGAATGCAGCTGATATGGAATCAAAAGAGTTTGATGATACTTTAGACATGGAAGACAACTCAGCTCTTTTGCAGAAAAGTATGGTTCCAGAAGTTTCAGACCCCTCATGGAAGCTTTCCTTACCCCATGTACTAGTGGCAACTATATCTTCATTCTTGTTCGGGTACCATCTCGGAGTAGTCAATGAACCACTTGAAAGCATTTCTGCAGATCTTGGTTTCAAGGGTAACGCATTGGCTGAAGGTCTGGTGGTGAGTACATGCTTGGGAGGTGCCTTTCTCGGATCATTATTTAGTGGATGGATAGCTGATGGAGTTGGACGTCGTAGGGCTTTTCAACTGTGTGCATTGCCCATGATTATTGGTGCTGTTATCAGTGCAACATCCAAAACTCTTGCTGGTATGCTTATAGGAAGGTTGTTTGTTGGGACTGGTATGGGTCTGGGCCCTCCTGTTGCTTCTCTTTACGTAACTGAGGTTTCTCCTTCTTTTGTGAGGGGTACATATGGTAGTTTCATCCAGATTGCAACATGCCTTGGACTTATGGGGGCTCTTCTTGTTGGAATCCCTGTGAAAGAAATTGCGGGCTGGTGGCGTGTTTGCTTTTGGTTATCTACAATTCCAGCAGCAATACTTGCTCTAGCCATGGTATTCTGTACGGAGAGTCCACATTGGCTACATAAGCAAGGAAGAACTTACGAGGCAGAAGCTGCATTTGAGAAACTCCTTGGTGGATCACATGTCAAAACGGCAATGGTACAATTAGCCAAGTTGGACAGCGGAGATGAGACAGATGCTGTAAGCCTTTCAGAGTTGTTCTATGGCCGCCATTTCAGAGTTGTTTTTATTGGGTCAACCCTGTTTGCTTTACAACAGCTATCTGGTATAAATGCCGTCTTTTATTTCTCCTCAACTGTATTCAAAAGTGCCGGAGTACCATCAGGCCTTGCAAATGCCTTCATAGGAATTGCAAATTTATCAGGGTCTGTTGTCGCAATGACATTGATGGATAAAGTAGGAAGGAAGGTGCTACTGTTAGGGAGCTTCTTTGGCATGGCAATGGCAATGGCTGTTCAAGTCGTTGCAGCGAGTTCTTATTCATCAGGACCTGGGTCACTGTACCTATCTGTTGGTGGAATGCTGATGTTTGTTTTAACATTTGCCCTAGGAGCAGGTCCAGTTCCAGGTCTCCTTTTACCAGAAATATTTCCTGGCCGCATCAGGGCAAAAGCAATGGCTGTCTGTATGTCAGTGCATTGGGTGATAAATTTCTTCGTGGGTTTGCTCTTCTTGCAACTACTTGAAAAACTTGGCCCACAGCTTCTCTATTCTATGTTTGGTACCGTTTGCATGATGGCCGTGGTTTTTGTGAAACGAAATGTGGTGGAAACTAAAGGAAAATCGCTCCAAGAAATTGAGATAGCGCTCCTTCCACAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

501

Amino Acids

53.7

Weight (kDa)

7.6

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 17 - 447 2.7e-93 Sugar (and other) transporter
MFS_1 PF07690 25 - 363 2.3e-20 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 1223
Acc65I GGTACC 2 cut(s) 225, 1400
AccB1I GGYRCC 3 cut(s) 225, 332, 1400
AciI CCGC 6 cut(s) 10, 40, 644, 840, 886, 1276
AclWI GGATC 2 cut(s) 352, 802
AcoI YGGCCR 3 cut(s) 883, 1273, 1416
AcsI RAATTY 2 cut(s) 1033, 1327
AcuI CTGAAG 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 382
AfeI AGCGCT 1 cut(s) 1485
AfiI CCNNNNNNNGG 2 cut(s) 1244, 1282
AflIII ACRYGT 1 cut(s) 799
AgsI TTSAA 7 cut(s) 64, 257, 283, 398, 982, 1136, 1364
AhlI ACTAGT 1 cut(s) 193
AjnI CCWGG 3 cut(s) 1168, 1243, 1270
AluBI AGCT 8 cut(s) 71, 125, 175, 368, 770, 937, 1104, 1381
AluI AGCT 8 cut(s) 71, 125, 175, 368, 770, 937, 1104, 1381
Alw26I GTCTC 2 cut(s) 842, 1253
AlwI GGATC 2 cut(s) 352, 802
AlwNI CAGNNNCTG 4 cut(s) 770, 857, 1046, 1169
Aor51HI AGCGCT 1 cut(s) 1485
AoxI GGCC 6 cut(s) 505, 883, 1003, 1273, 1372, 1416
ApaI GGGCCC 1 cut(s) 509
ApeKI GCWGC 4 cut(s) 68, 686, 770, 1145
ApoI RAATTY 2 cut(s) 1033, 1327
Asp700I GAANNNNTTC 1 cut(s) 1266
Asp718I GGTACC 2 cut(s) 225, 1400
AspA2I CCTAGG 1 cut(s) 1225
AspLEI GCGC 1 cut(s) 1486
AspS9I GGNCC 6 cut(s) 7, 505, 506, 1166, 1235, 1373
AsuHPI GGTGA 2 cut(s) 325, 1333
AvaII GGWCC 3 cut(s) 7, 1166, 1235
AvrII CCTAGG 1 cut(s) 1225
BaeGI GKGCMC 1 cut(s) 509
BanI GGYRCC 3 cut(s) 225, 332, 1400
BanII GRGCYC 2 cut(s) 509, 613
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 4 cut(s) 80, 698, 757, 1157
BccI CCATC 6 cut(s) 237, 354, 365, 1006, 1060, 1408
BceAI ACGGC 3 cut(s) 825, 938, 1403
BciT130I CCWGG 3 cut(s) 1170, 1245, 1272
BcoDI GTCTC 2 cut(s) 842, 1253
BcuI ACTAGT 1 cut(s) 193
BfaI CTAG 3 cut(s) 194, 701, 1226
BfmI CTRYAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 1487
BfuAI ACCTGC 1 cut(s) 1223
BglII AGATCT 1 cut(s) 271
BisI GCNGC 6 cut(s) 69, 687, 771, 886, 1146, 1276
BlnI CCTAGG 1 cut(s) 1225
BlsI GCNGC 6 cut(s) 70, 688, 772, 887, 1147, 1277
Bme1390I CCNGG 3 cut(s) 1170, 1245, 1272
Bme18I GGWCC 3 cut(s) 7, 1166, 1235
BmgT120I GGNCC 6 cut(s) 7, 505, 506, 1166, 1235, 1373
BmiI GGNNCC 6 cut(s) 8, 147, 227, 334, 507, 1402
BmrFI CCNGG 3 cut(s) 1170, 1245, 1272
BmsI GCATC 2 cut(s) 844, 1287
BoxI GACNNNNGTC 1 cut(s) 1171
BpiI GAAGAC 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 529
BsaHI GRCGYC 1 cut(s) 382
BsaI GGTCTC 1 cut(s) 1253
BsaJI CCNNGG 6 cut(s) 595, 705, 787, 1169, 1225, 1419
Bsc4I CCNNNNNNNGG 2 cut(s) 1244, 1282
Bse1I ACTGG 2 cut(s) 496, 1238
Bse3DI GCAATG 6 cut(s) 407, 819, 1062, 1125, 1131, 1299
BseBI CCWGG 3 cut(s) 1170, 1245, 1272
BseDI CCNNGG 6 cut(s) 595, 705, 787, 1169, 1225, 1419
BseGI GGATG 3 cut(s) 365, 443, 576
BseLI CCNNNNNNNGG 2 cut(s) 1244, 1282
BseMI GCAATG 6 cut(s) 407, 819, 1062, 1125, 1131, 1299
BseMII CTCAG 2 cut(s) 135, 525
BseNI ACTGG 2 cut(s) 496, 1238
BseRI GAGGAG 1 cut(s) 958
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 4 cut(s) 80, 698, 757, 1157
BshFI GGCC 6 cut(s) 507, 885, 1005, 1275, 1374, 1418
BshNI GGYRCC 3 cut(s) 225, 332, 1400
BsiSI CCGG 1 cut(s) 990
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 2 cut(s) 1244, 1282
BsmAI GTCTC 2 cut(s) 842, 1253
BsmFI GGGAC 1 cut(s) 502
BsmI GAATGC 2 cut(s) 70, 1203
BsnI GGCC 6 cut(s) 507, 885, 1005, 1275, 1374, 1418
Bso31I GGTCTC 1 cut(s) 1253
Bsp120I GGGCCC 1 cut(s) 505
Bsp1286I GDGCHC 2 cut(s) 509, 613
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 3 cut(s) 271, 344, 794
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 6 cut(s) 10, 40, 644, 840, 886, 1276
BspANI GGCC 6 cut(s) 507, 885, 1005, 1275, 1374, 1418
BspCNI CTCAG 2 cut(s) 134, 526
BspLI GGNNCC 6 cut(s) 8, 147, 227, 334, 507, 1402
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 1223
BspPI GGATC 2 cut(s) 352, 802
BspQI GCTCTTC 2 cut(s) 618, 1352
BspT107I GGYRCC 3 cut(s) 225, 332, 1400
BspTNI GGTCTC 1 cut(s) 1253
BsrDI GCAATG 6 cut(s) 407, 819, 1062, 1125, 1131, 1299
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 2 cut(s) 496, 1238
BssECI CCNNGG 6 cut(s) 595, 705, 787, 1169, 1225, 1419
BssMI GATC 3 cut(s) 271, 344, 794
BssNI GRCGYC 1 cut(s) 382
BssT1I CCWWGG 4 cut(s) 595, 705, 787, 1225
Bst2UI CCWGG 3 cut(s) 1170, 1245, 1272
Bst4CI ACNGT 5 cut(s) 402, 976, 1095, 1179, 1405
Bst6I CTCTTC 2 cut(s) 618, 1352
BstACI GRCGYC 1 cut(s) 382
BstAPI GCANNNNNTGC 2 cut(s) 695, 770
BstAUI TGTACA 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 646
BstDEI CTNAG 2 cut(s) 121, 534
BstDSI CCRYGG 2 cut(s) 705, 1419
BstF5I GGATG 3 cut(s) 365, 443, 576
BstH2I RGCGCY 1 cut(s) 1487
BstHHI GCGC 1 cut(s) 1486
BstKTI GATC 3 cut(s) 274, 347, 797
BstMAI GTCTC 2 cut(s) 842, 1253
BstMBI GATC 3 cut(s) 271, 344, 794
BstMWI GCNNNNNNNGC 6 cut(s) 695, 742, 770, 1110, 1229, 1351
BstNI CCWGG 3 cut(s) 1170, 1245, 1272
BstNSI RCATGY 3 cut(s) 324, 594, 803
BstPAI GACNNNNGTC 1 cut(s) 1171
BstSCI CCNGG 3 cut(s) 1168, 1243, 1270
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 509
BstSNI TACGTA 1 cut(s) 529
BstV1I GCAGC 4 cut(s) 80, 698, 757, 1157
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 6 cut(s) 507, 885, 1005, 1275, 1374, 1418
BtgI CCRYGG 2 cut(s) 705, 1419
BtsCI GGATG 3 cut(s) 365, 443, 576
BtsIMutI CAGTG 3 cut(s) 442, 1175, 1317
BveI ACCTGC 1 cut(s) 1223
Cac8I GCNNGC 1 cut(s) 646
CaiI CAGNNNCTG 4 cut(s) 770, 857, 1046, 1169
CfoI GCGC 1 cut(s) 1486
Cfr13I GGNCC 6 cut(s) 7, 505, 506, 1166, 1235, 1373
DdeI CTNAG 2 cut(s) 121, 534
DpnI GATC 3 cut(s) 273, 346, 796
DpnII GATC 3 cut(s) 271, 344, 794
EaeI YGGCCR 3 cut(s) 883, 1273, 1416
Eam1104I CTCTTC 2 cut(s) 618, 1352
EarI CTCTTC 2 cut(s) 618, 1352
Eco105I TACGTA 1 cut(s) 529
Eco130I CCWWGG 4 cut(s) 595, 705, 787, 1225
Eco147I AGGCCT 1 cut(s) 1005
Eco24I GRGCYC 2 cut(s) 509, 613
Eco31I GGTCTC 1 cut(s) 1253
Eco47I GGWCC 3 cut(s) 7, 1166, 1235
Eco47III AGCGCT 1 cut(s) 1485
Eco57I CTGAAG 1 cut(s) 321
EcoO109I RGGNCCY 2 cut(s) 506, 1166
EcoRII CCWGG 3 cut(s) 1168, 1243, 1270
EcoT14I CCWWGG 4 cut(s) 595, 705, 787, 1225
EcoT38I GRGCYC 2 cut(s) 509, 613
ErhI CCWWGG 4 cut(s) 595, 705, 787, 1225
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 1 cut(s) 502
FauI CCCGC 1 cut(s) 637
FauNDI CATATG 1 cut(s) 565
Fnu4HI GCNGC 6 cut(s) 69, 687, 771, 886, 1146, 1276
FokI GGATG 3 cut(s) 372, 430, 563
FriOI GRGCYC 2 cut(s) 509, 613
Fsp4HI GCNGC 6 cut(s) 69, 687, 771, 886, 1146, 1276
FspBI CTAG 3 cut(s) 194, 701, 1226
GlaI GCGC 1 cut(s) 1485
GluI GCNGC 6 cut(s) 69, 687, 771, 886, 1146, 1276
HaeII RGCGCY 1 cut(s) 1487
HaeIII GGCC 6 cut(s) 507, 885, 1005, 1275, 1374, 1418
HapII CCGG 1 cut(s) 990
HhaI GCGC 1 cut(s) 1486
Hin1I GRCGYC 1 cut(s) 382
Hin6I GCGC 1 cut(s) 1484
HinP1I GCGC 1 cut(s) 1484
HincII GTYRAC 1 cut(s) 915
HindII GTYRAC 1 cut(s) 915
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 3 cut(s) 80, 624, 724
HpaII CCGG 1 cut(s) 990
HphI GGTGA 2 cut(s) 325, 1333
Hpy166II GTNNAC 2 cut(s) 728, 915
Hpy188I TCNGA 5 cut(s) 160, 236, 344, 871, 896
Hpy188III TCNNGA 4 cut(s) 51, 149, 580, 1164
Hpy8I GTNNAC 2 cut(s) 728, 915
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 7 cut(s) 296, 468, 555, 1027, 1074, 1078, 1499
HpyCH4III ACNGT 5 cut(s) 402, 976, 1095, 1179, 1405
HpyCH4IV ACGT 3 cut(s) 16, 382, 528
HpyF10VI GCNNNNNNNGC 6 cut(s) 695, 742, 770, 1110, 1229, 1351
HpyF3I CTNAG 2 cut(s) 121, 534
HpySE526I ACGT 3 cut(s) 16, 382, 528
Hsp92I GRCGYC 1 cut(s) 382
HspAI GCGC 1 cut(s) 1484
KpnI GGTACC 2 cut(s) 229, 1404
Kzo9I GATC 3 cut(s) 271, 344, 794
LguI GCTCTTC 2 cut(s) 618, 1352
LmnI GCTCC 4 cut(s) 1101, 1229, 1470, 1491
Lsp1109I GCAGC 4 cut(s) 80, 698, 757, 1157
LweI GCATC 2 cut(s) 844, 1287
MaeI CTAG 3 cut(s) 194, 701, 1226
MaeII ACGT 3 cut(s) 16, 382, 528
MaeIII GTNAC 3 cut(s) 287, 529, 1173
MalI GATC 3 cut(s) 273, 346, 796
MboI GATC 3 cut(s) 271, 344, 794
MboII GAAGA 6 cut(s) 125, 201, 605, 762, 1324, 1339
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 2 cut(s) 509, 613
MluCI AATT 7 cut(s) 639, 678, 821, 1026, 1033, 1327, 1473
MlyI GAGTC 1 cut(s) 733
MmeI TCCRAC 3 cut(s) 358, 601, 813
MnlI CCTC 7 cut(s) 175, 323, 519, 529, 549, 754, 979
MroXI GAANNNNTTC 1 cut(s) 1266
MseI TTAA 1 cut(s) 1214
MslI CAYNNNNRTG 1 cut(s) 1118
MspA1I CMGCKG 2 cut(s) 71, 840
MspI CCGG 1 cut(s) 990
MspR9I CCNGG 3 cut(s) 1170, 1245, 1272
Mva1269I GAATGC 2 cut(s) 70, 1203
MvaI CCWGG 3 cut(s) 1170, 1245, 1272
MwoI GCNNNNNNNGC 6 cut(s) 695, 742, 770, 1110, 1229, 1351
NcoI CCATGG 1 cut(s) 705
NdeI CATATG 1 cut(s) 565
NdeII GATC 3 cut(s) 271, 344, 794
NlaIV GGNNCC 6 cut(s) 8, 147, 227, 334, 507, 1402
NmuCI GTSAC 1 cut(s) 1173
NspI RCATGY 3 cut(s) 324, 594, 803
PceI AGGCCT 1 cut(s) 1005
PciI ACATGT 1 cut(s) 799
PciSI GCTCTTC 2 cut(s) 618, 1352
PctI GAATGC 2 cut(s) 70, 1203
PdmI GAANNNNTTC 1 cut(s) 1266
PfeI GAWTC 2 cut(s) 80, 624
PkrI GCNGC 6 cut(s) 70, 688, 772, 887, 1147, 1277
PleI GAGTC 1 cut(s) 732
PpsI GAGTC 1 cut(s) 732
Ppu21I YACGTR 1 cut(s) 529
PpuMI RGGWCCY 1 cut(s) 1166
PscI ACATGT 1 cut(s) 799
PshAI GACNNNNGTC 1 cut(s) 1171
Psp5II RGGWCCY 1 cut(s) 1166
Psp6I CCWGG 3 cut(s) 1168, 1243, 1270
PspGI CCWGG 3 cut(s) 1168, 1243, 1270
PspN4I GGNNCC 6 cut(s) 8, 147, 227, 334, 507, 1402
PspOMI GGGCCC 1 cut(s) 505
PspPI GGNCC 6 cut(s) 7, 505, 506, 1166, 1235, 1373
PspPPI RGGWCCY 1 cut(s) 1166
PstI CTGCAG 1 cut(s) 271
PstNI CAGNNNCTG 4 cut(s) 770, 857, 1046, 1169
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 1118
SapI GCTCTTC 2 cut(s) 618, 1352
SaqAI TTAA 1 cut(s) 1214
SatI GCNGC 6 cut(s) 69, 687, 771, 886, 1146, 1276
Sau3AI GATC 3 cut(s) 271, 344, 794
Sau96I GGNCC 6 cut(s) 7, 505, 506, 1166, 1235, 1373
SchI GAGTC 1 cut(s) 733
ScrFI CCNGG 3 cut(s) 1170, 1245, 1272
SduI GDGCHC 2 cut(s) 509, 613
SfaNI GCATC 2 cut(s) 844, 1287
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 3 cut(s) 7, 1166, 1235
SmiMI CAYNNNNRTG 1 cut(s) 1118
SnaBI TACGTA 1 cut(s) 529
SpeI ACTAGT 1 cut(s) 193
Sse9I AATT 7 cut(s) 639, 678, 821, 1026, 1033, 1327, 1473
SseBI AGGCCT 1 cut(s) 1005
SsiI CCGC 6 cut(s) 10, 40, 644, 840, 886, 1276
SspI AATATT 1 cut(s) 1266
SspMI CTAG 3 cut(s) 194, 701, 1226
StuI AGGCCT 1 cut(s) 1005
StyD4I CCNGG 3 cut(s) 1168, 1243, 1270
StyI CCWWGG 4 cut(s) 595, 705, 787, 1225
TaaI ACNGT 5 cut(s) 402, 976, 1095, 1179, 1405
TaiI ACGT 3 cut(s) 19, 385, 531
TaqI TCGA 2 cut(s) 29, 50
TasI AATT 7 cut(s) 639, 678, 821, 1026, 1033, 1327, 1473
TatI WGTACW 3 cut(s) 33, 190, 317
TauI GCSGC 2 cut(s) 888, 1278
TfiI GAWTC 2 cut(s) 80, 624
Tru1I TTAA 1 cut(s) 1214
Tru9I TTAA 1 cut(s) 1214
TscAI CASTG 3 cut(s) 442, 1182, 1317
TseFI GTSAC 1 cut(s) 1173
TseI GCWGC 4 cut(s) 68, 686, 770, 1145
Tsp45I GTSAC 1 cut(s) 1173
TspDTI ATGAA 5 cut(s) 201, 261, 565, 1009, 1149
TspGWI ACGGA 1 cut(s) 734
TspRI CASTG 3 cut(s) 442, 1182, 1317
VpaK11BI GGWCC 3 cut(s) 7, 1166, 1235
XapI RAATTY 2 cut(s) 1033, 1327
XceI RCATGY 3 cut(s) 324, 594, 803
XmaJI CCTAGG 1 cut(s) 1225
XmnI GAANNNNTTC 1 cut(s) 1266
XspI CTAG 3 cut(s) 194, 701, 1226
ZraI GACGTC 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.