RLG00000016064
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
3617903 .. 3624504
6602 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016064

Sequence Viewer

Length: 1611 bp
ATGGCAGAGAGGGAGAGTAGCTCGATTTGGTACAAGCTGGCATACGAGGAGGCGAAGGGTCGGGTTGGGCGAGATCCATTGAATGATCGGAGCGCAGAGAAGCTTCTTATGTGGGCCCGCCAACGTGAACCATACTCGATGTACAAGCGTGCGTCATCGAGAGATTATATGAATACCACTGATATGGAATCAAAAGAGTTTGTAGATACTCTTGACATGGAAGACAACTCAGCTCTTTTGCAGAAAAGTATGGTTCCAGAACTTTCAAACCCCTCATGGAGGCTTTCCTTACCCCATGTACTTGTGGCAACTATATCTTCATTCTTGTTTGGGTACCATCTCGGAGTAGTCAATGAACCACTTGAAAGCATTTCTGCAGATCTTGGTTTCAAGGGGAATGCCTTGGCTGAAGGTCTGGTGGTGAGTACATGCTTGGGAGGTGCCTTTCTTGGATCTTTATTTAGTGGATGGATAGCTGATGGAGTTGGACGTCGTAGGGCTTTTCAACTGTGTGCATTGCCTATGATTATTGGTGCTGTTATGAGTGCAACAGCCAAGACTCTTGCTGGTATGCTTATAGGAAGGTTATTTGTTGGGACTGGTATGGGTCTGGGCCCTCCTGTTGCTTCGCTTTATGTAACAGAGGTTTCTCCTTCTTTTGTGAGGGGTACTTACGGTAGTTTCATCCAGATTGCAACATGCCTTGGACTTATGGGGGCTCTTCTTGTTGGAATCCCTGTGAAAGAAATTGCGGGCTGGTGGCGTGTTTGTTTTTGGGTATCTACAATTCCAGCTGCAATACTTGCTCTAGCCATGGTATTCTGTGCAGAGAGTCCACATTGGCTACATAAGAAAGGAAGAACTTACGAGGCAGAAGCTGCATTTGAGAAACTCCTTGGTGGATCACATGTCAAAACTGCAATGGTACAATTAAACAAGGTGGACAGTGGAGATGAGACAGATGCTGTAAGCCTTTCAGAGTTGTTCTATGGCCGCCATTTCAGAGTTGTTTTTATTGGGTCAACCCTATTTGCTTTACAACAGCTATCTGGTATAAATGCTGTCTTTTATTTCTCCTCAACTGTATTCAAAAGTGCTGGAGTACCATCAGGCCTTGCTAATGCCTTCATAGGAATTGCAAATATATCAGGATCTGTTGTCGCAATGGCTTTGATGGATAAAGTAGGAAGGAAGGTGCTACTGTTATGGAGCTTCTTTGGCATGGCAATGGCAATGGCTGTTCAAGTTGTTGCAGCGAGTTCTTATTCATCAGGATCTGGGTCACTGTACCTATCTGTTGGTGGAATGCTGATGTTTGTCTTAACATTTGCCCTAGGAGCAGGCCCAGTTCCAGGTCTCCTTTTACCAGAAATATTTCCAGGCCGCATCAGGGCAAAAGCAATGGCTGTCTGTATGTCAGTGCATTGGGTGATAAATTTCTTCGTGGGTTTGCTGTTCTTGCAACTACTAGAAAATCTTGGCCCACAGCTTCTGTATTCCATGTTTGGTACCGTTTGCATGATGGCTGTGGTTTTTGTGAAACGGAATGTGGTGGAAACTAAAGGAAAATCGCTCCAAGAGATTGAGATAGCGCTCCTTCCACAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

537

Amino Acids

57.97

Weight (kDa)

8.36

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 100 - 530 8.6e-94 Sugar (and other) transporter
MFS_1 PF07690 108 - 445 1e-20 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 493
Acc65I GGTACC 2 cut(s) 333, 1508
AccB1I GGYRCC 3 cut(s) 333, 440, 1508
AciI CCGC 4 cut(s) 118, 752, 994, 1384
AclWI GGATC 5 cut(s) 68, 460, 910, 1159, 1282
AcoI YGGCCR 1 cut(s) 991
AcsI RAATTY 1 cut(s) 1435
AcuI CTGAAG 1 cut(s) 429
AcyI GRCGYC 1 cut(s) 490
AfeI AGCGCT 1 cut(s) 1593
AfiI CCNNNNNNNGG 3 cut(s) 279, 1352, 1390
AflIII ACRYGT 1 cut(s) 907
AgsI TTSAA 7 cut(s) 82, 267, 365, 391, 506, 1090, 1244
AjnI CCWGG 2 cut(s) 1351, 1378
Alw26I GTCTC 2 cut(s) 950, 1361
AlwI GGATC 5 cut(s) 68, 460, 910, 1159, 1282
AlwNI CAGNNNCTG 5 cut(s) 878, 965, 1154, 1277, 1492
Aor51HI AGCGCT 1 cut(s) 1593
AoxI GGCC 7 cut(s) 114, 613, 991, 1111, 1342, 1381, 1480
ApaI GGGCCC 2 cut(s) 118, 617
ApeKI GCWGC 3 cut(s) 794, 878, 1253
ApoI RAATTY 1 cut(s) 1435
Asp700I GAANNNNTTC 1 cut(s) 1374
Asp718I GGTACC 2 cut(s) 333, 1508
AspA2I CCTAGG 1 cut(s) 1333
AspLEI GCGC 2 cut(s) 95, 1594
AspS9I GGNCC 6 cut(s) 114, 115, 613, 614, 1343, 1481
AsuHPI GGTGA 2 cut(s) 433, 1441
AvrII CCTAGG 1 cut(s) 1333
BaeGI GKGCMC 2 cut(s) 118, 617
BanI GGYRCC 3 cut(s) 333, 440, 1508
BanII GRGCYC 3 cut(s) 118, 617, 721
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 781, 865, 1265
BccI CCATC 6 cut(s) 345, 462, 473, 1114, 1168, 1516
BciT130I CCWGG 2 cut(s) 1353, 1380
BcoDI GTCTC 2 cut(s) 950, 1361
BfaI CTAG 3 cut(s) 809, 1334, 1469
BfmI CTRYAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 1595
BglII AGATCT 1 cut(s) 379
BisI GCNGC 5 cut(s) 795, 879, 994, 1254, 1384
BlnI CCTAGG 1 cut(s) 1333
BlsI GCNGC 5 cut(s) 796, 880, 995, 1255, 1385
Bme1390I CCNGG 2 cut(s) 1353, 1380
BmgT120I GGNCC 6 cut(s) 114, 115, 613, 614, 1343, 1481
BmiI GGNNCC 6 cut(s) 116, 255, 335, 442, 615, 1510
BmrFI CCNGG 2 cut(s) 1353, 1380
BmrI ACTGGG 1 cut(s) 1340
BmsI GCATC 2 cut(s) 952, 1395
BmuI ACTGGG 1 cut(s) 1340
BpiI GAAGAC 1 cut(s) 228
BplI GAGNNNNNCTC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 1119
BsaHI GRCGYC 1 cut(s) 490
BsaI GGTCTC 1 cut(s) 1361
BsaJI CCNNGG 5 cut(s) 402, 703, 813, 895, 1333
Bsc4I CCNNNNNNNGG 3 cut(s) 279, 1352, 1390
Bse1I ACTGG 2 cut(s) 604, 1346
Bse3DI GCAATG 6 cut(s) 515, 927, 1170, 1233, 1239, 1407
BseBI CCWGG 2 cut(s) 1353, 1380
BseDI CCNNGG 5 cut(s) 402, 703, 813, 895, 1333
BseGI GGATG 2 cut(s) 473, 684
BseLI CCNNNNNNNGG 3 cut(s) 279, 1352, 1390
BseMI GCAATG 6 cut(s) 515, 927, 1170, 1233, 1239, 1407
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 2 cut(s) 604, 1346
BseRI GAGGAG 2 cut(s) 62, 1066
BseSI GKGCMC 2 cut(s) 118, 617
BseXI GCAGC 3 cut(s) 781, 865, 1265
BsgI GTGCAG 1 cut(s) 846
BshFI GGCC 7 cut(s) 116, 615, 993, 1113, 1344, 1383, 1482
BshNI GGYRCC 3 cut(s) 333, 440, 1508
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 3 cut(s) 279, 1352, 1390
BsmAI GTCTC 2 cut(s) 950, 1361
BsmFI GGGAC 1 cut(s) 610
BsmI GAATGC 2 cut(s) 403, 1311
BsnI GGCC 7 cut(s) 116, 615, 993, 1113, 1344, 1383, 1482
Bso31I GGTCTC 1 cut(s) 1361
Bsp120I GGGCCC 2 cut(s) 114, 613
Bsp1286I GDGCHC 3 cut(s) 118, 617, 721
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 7 cut(s) 73, 85, 379, 452, 902, 1151, 1274
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 4 cut(s) 118, 752, 994, 1384
BspANI GGCC 7 cut(s) 116, 615, 993, 1113, 1344, 1383, 1482
BspCNI CTCAG 1 cut(s) 242
BspLI GGNNCC 6 cut(s) 116, 255, 335, 442, 615, 1510
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 5 cut(s) 68, 460, 910, 1159, 1282
BspQI GCTCTTC 1 cut(s) 726
BspT107I GGYRCC 3 cut(s) 333, 440, 1508
BspTNI GGTCTC 1 cut(s) 1361
BsrDI GCAATG 6 cut(s) 515, 927, 1170, 1233, 1239, 1407
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 2 cut(s) 604, 1346
BssECI CCNNGG 5 cut(s) 402, 703, 813, 895, 1333
BssMI GATC 7 cut(s) 73, 85, 379, 452, 902, 1151, 1274
BssNI GRCGYC 1 cut(s) 490
BssT1I CCWWGG 5 cut(s) 402, 703, 813, 895, 1333
Bst2UI CCWGG 2 cut(s) 1353, 1380
Bst4CI ACNGT 7 cut(s) 510, 677, 947, 1084, 1203, 1287, 1513
Bst6I CTCTTC 1 cut(s) 726
BstACI GRCGYC 1 cut(s) 490
BstAPI GCANNNNNTGC 2 cut(s) 803, 878
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 5 cut(s) 39, 118, 150, 754, 1342
BstDEI CTNAG 1 cut(s) 229
BstDSI CCRYGG 1 cut(s) 813
BstENI CCTNNNNNAGG 1 cut(s) 277
BstF5I GGATG 2 cut(s) 473, 684
BstH2I RGCGCY 1 cut(s) 1595
BstHHI GCGC 2 cut(s) 95, 1594
BstKTI GATC 7 cut(s) 76, 88, 382, 455, 905, 1154, 1277
BstMAI GTCTC 2 cut(s) 950, 1361
BstMBI GATC 7 cut(s) 73, 85, 379, 452, 902, 1151, 1274
BstMWI GCNNNNNNNGC 5 cut(s) 803, 878, 1218, 1337, 1459
BstNI CCWGG 2 cut(s) 1353, 1380
BstNSI RCATGY 3 cut(s) 432, 702, 911
BstSCI CCNGG 2 cut(s) 1351, 1378
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 2 cut(s) 118, 617
BstV1I GCAGC 3 cut(s) 781, 865, 1265
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 5 cut(s) 73, 379, 452, 1151, 1274
BstXI CCANNNNNNTGG 1 cut(s) 184
BstYI RGATCY 5 cut(s) 73, 379, 452, 1151, 1274
BsuRI GGCC 7 cut(s) 116, 615, 993, 1113, 1344, 1383, 1482
BtgI CCRYGG 1 cut(s) 813
BtsCI GGATG 2 cut(s) 473, 684
BtsIMutI CAGTG 4 cut(s) 177, 952, 1283, 1425
Cac8I GCNNGC 5 cut(s) 39, 118, 150, 754, 1342
CaiI CAGNNNCTG 5 cut(s) 878, 965, 1154, 1277, 1492
CfoI GCGC 2 cut(s) 95, 1594
Cfr13I GGNCC 6 cut(s) 114, 115, 613, 614, 1343, 1481
CseI GACGC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 229
DpnI GATC 7 cut(s) 75, 87, 381, 454, 904, 1153, 1276
DpnII GATC 7 cut(s) 73, 85, 379, 452, 902, 1151, 1274
EaeI YGGCCR 1 cut(s) 991
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
Eco130I CCWWGG 5 cut(s) 402, 703, 813, 895, 1333
Eco147I AGGCCT 1 cut(s) 1113
Eco24I GRGCYC 3 cut(s) 118, 617, 721
Eco31I GGTCTC 1 cut(s) 1361
Eco47III AGCGCT 1 cut(s) 1593
Eco57I CTGAAG 1 cut(s) 429
EcoNI CCTNNNNNAGG 1 cut(s) 277
EcoO109I RGGNCCY 1 cut(s) 614
EcoRII CCWGG 2 cut(s) 1351, 1378
EcoT14I CCWWGG 5 cut(s) 402, 703, 813, 895, 1333
EcoT38I GRGCYC 3 cut(s) 118, 617, 721
ErhI CCWWGG 5 cut(s) 402, 703, 813, 895, 1333
FaqI GGGAC 1 cut(s) 610
FauI CCCGC 2 cut(s) 125, 745
Fnu4HI GCNGC 5 cut(s) 795, 879, 994, 1254, 1384
FokI GGATG 2 cut(s) 480, 671
FriOI GRGCYC 3 cut(s) 118, 617, 721
Fsp4HI GCNGC 5 cut(s) 795, 879, 994, 1254, 1384
FspBI CTAG 3 cut(s) 809, 1334, 1469
GlaI GCGC 2 cut(s) 94, 1593
GluI GCNGC 5 cut(s) 795, 879, 994, 1254, 1384
GsuI CTGGAG 1 cut(s) 1119
HaeII RGCGCY 1 cut(s) 1595
HaeIII GGCC 7 cut(s) 116, 615, 993, 1113, 1344, 1383, 1482
HgaI GACGC 1 cut(s) 141
HhaI GCGC 2 cut(s) 95, 1594
Hin1I GRCGYC 1 cut(s) 490
Hin6I GCGC 2 cut(s) 93, 1592
HinP1I GCGC 2 cut(s) 93, 1592
HincII GTYRAC 1 cut(s) 1023
HindII GTYRAC 1 cut(s) 1023
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 4 cut(s) 188, 559, 732, 832
HphI GGTGA 2 cut(s) 433, 1441
Hpy166II GTNNAC 4 cut(s) 128, 836, 943, 1023
Hpy188I TCNGA 4 cut(s) 90, 344, 979, 1004
Hpy188III TCNNGA 6 cut(s) 159, 212, 257, 688, 1149, 1272
Hpy8I GTNNAC 4 cut(s) 128, 836, 943, 1023
Hpy99I CGWCG 1 cut(s) 495
HpyAV CCTTC 8 cut(s) 49, 404, 576, 663, 1135, 1182, 1186, 1607
HpyCH4III ACNGT 7 cut(s) 510, 677, 947, 1084, 1203, 1287, 1513
HpyCH4IV ACGT 2 cut(s) 124, 490
HpyF10VI GCNNNNNNNGC 5 cut(s) 803, 878, 1218, 1337, 1459
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 2 cut(s) 124, 490
Hsp92I GRCGYC 1 cut(s) 490
HspAI GCGC 2 cut(s) 93, 1592
KpnI GGTACC 2 cut(s) 337, 1512
Kzo9I GATC 7 cut(s) 73, 85, 379, 452, 902, 1151, 1274
LguI GCTCTTC 1 cut(s) 726
LmnI GCTCC 5 cut(s) 90, 1209, 1337, 1578, 1599
Lsp1109I GCAGC 3 cut(s) 781, 865, 1265
LweI GCATC 2 cut(s) 952, 1395
MaeI CTAG 3 cut(s) 809, 1334, 1469
MaeII ACGT 2 cut(s) 124, 490
MaeIII GTNAC 2 cut(s) 637, 1281
MalI GATC 7 cut(s) 75, 87, 381, 454, 904, 1153, 1276
MboI GATC 7 cut(s) 73, 85, 379, 452, 902, 1151, 1274
MboII GAAGA 5 cut(s) 233, 309, 713, 870, 1432
MflI RGATCY 5 cut(s) 73, 379, 452, 1151, 1274
MhlI GDGCHC 3 cut(s) 118, 617, 721
MluCI AATT 5 cut(s) 747, 786, 929, 1134, 1435
MlyI GAGTC 2 cut(s) 553, 841
MmeI TCCRAC 2 cut(s) 466, 709
MroXI GAANNNNTTC 1 cut(s) 1374
MseI TTAA 2 cut(s) 932, 1322
MslI CAYNNNNRTG 2 cut(s) 182, 1226
MspA1I CMGCKG 1 cut(s) 794
MspR9I CCNGG 2 cut(s) 1353, 1380
Mva1269I GAATGC 2 cut(s) 403, 1311
MvaI CCWGG 2 cut(s) 1353, 1380
MwoI GCNNNNNNNGC 5 cut(s) 803, 878, 1218, 1337, 1459
NcoI CCATGG 1 cut(s) 813
NdeII GATC 7 cut(s) 73, 85, 379, 452, 902, 1151, 1274
NlaIV GGNNCC 6 cut(s) 116, 255, 335, 442, 615, 1510
NmuCI GTSAC 1 cut(s) 1281
NspI RCATGY 3 cut(s) 432, 702, 911
PceI AGGCCT 1 cut(s) 1113
PciI ACATGT 1 cut(s) 907
PciSI GCTCTTC 1 cut(s) 726
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PctI GAATGC 2 cut(s) 403, 1311
PdmI GAANNNNTTC 1 cut(s) 1374
PfeI GAWTC 2 cut(s) 188, 732
PkrI GCNGC 5 cut(s) 796, 880, 995, 1255, 1385
PleI GAGTC 2 cut(s) 553, 840
PpsI GAGTC 2 cut(s) 553, 840
PscI ACATGT 1 cut(s) 907
Psp6I CCWGG 2 cut(s) 1351, 1378
PspGI CCWGG 2 cut(s) 1351, 1378
PspN4I GGNNCC 6 cut(s) 116, 255, 335, 442, 615, 1510
PspOMI GGGCCC 2 cut(s) 114, 613
PspPI GGNCC 6 cut(s) 114, 115, 613, 614, 1343, 1481
PstI CTGCAG 1 cut(s) 379
PstNI CAGNNNCTG 5 cut(s) 878, 965, 1154, 1277, 1492
PsuI RGATCY 5 cut(s) 73, 379, 452, 1151, 1274
PvuII CAGCTG 1 cut(s) 794
RseI CAYNNNNRTG 2 cut(s) 182, 1226
SapI GCTCTTC 1 cut(s) 726
SaqAI TTAA 2 cut(s) 932, 1322
SatI GCNGC 5 cut(s) 795, 879, 994, 1254, 1384
Sau3AI GATC 7 cut(s) 73, 85, 379, 452, 902, 1151, 1274
Sau96I GGNCC 6 cut(s) 114, 115, 613, 614, 1343, 1481
SchI GAGTC 2 cut(s) 553, 841
ScrFI CCNGG 2 cut(s) 1353, 1380
SduI GDGCHC 3 cut(s) 118, 617, 721
SfaNI GCATC 2 cut(s) 952, 1395
SfcI CTRYAG 1 cut(s) 375
SmiMI CAYNNNNRTG 2 cut(s) 182, 1226
Sse9I AATT 5 cut(s) 747, 786, 929, 1134, 1435
SseBI AGGCCT 1 cut(s) 1113
SsiI CCGC 4 cut(s) 118, 752, 994, 1384
SspI AATATT 1 cut(s) 1374
SspMI CTAG 3 cut(s) 809, 1334, 1469
StuI AGGCCT 1 cut(s) 1113
StyD4I CCNGG 2 cut(s) 1351, 1378
StyI CCWWGG 5 cut(s) 402, 703, 813, 895, 1333
TaaI ACNGT 7 cut(s) 510, 677, 947, 1084, 1203, 1287, 1513
TaiI ACGT 2 cut(s) 127, 493
TaqI TCGA 3 cut(s) 23, 137, 158
TasI AATT 5 cut(s) 747, 786, 929, 1134, 1435
TatI WGTACW 3 cut(s) 141, 298, 425
TauI GCSGC 2 cut(s) 996, 1386
TfiI GAWTC 2 cut(s) 188, 732
Tru1I TTAA 2 cut(s) 932, 1322
Tru9I TTAA 2 cut(s) 932, 1322
TscAI CASTG 4 cut(s) 184, 952, 1290, 1425
TseFI GTSAC 1 cut(s) 1281
TseI GCWGC 3 cut(s) 794, 878, 1253
Tsp45I GTSAC 1 cut(s) 1281
TspDTI ATGAA 6 cut(s) 185, 309, 369, 673, 1117, 1257
TspGWI ACGGA 1 cut(s) 1558
TspRI CASTG 4 cut(s) 184, 952, 1290, 1425
XagI CCTNNNNNAGG 1 cut(s) 277
XapI RAATTY 1 cut(s) 1435
XceI RCATGY 3 cut(s) 432, 702, 911
XmaJI CCTAGG 1 cut(s) 1333
XmnI GAANNNNTTC 1 cut(s) 1374
XspI CTAG 3 cut(s) 809, 1334, 1469
ZraI GACGTC 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.