Rorug02G0003900
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004000
Physical Location & Seq
Forward (+)
446055 .. 448140
2086 bp
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UTR
Exon/CDS
Intron
Rorug02G0003900.1

Sequence Viewer

Length: 408 bp
ATGGCCGATAACAAGGCGGTTACGATCCGAACCAGGAAGTTCATGACAAATCGTCTTCTCTCCAGGAAGCAATTCGTCATCGATGTTTTGCATCCAGGAAGACCAAACGTCTCCAAGGCGGAGTTGAAGGAGAAACTGGCAAGGATGTACGAAGTGAAGGATACAAATGCCATCTTTGTTTTCAAGTTCCGCACCCATTTTGGAGGGGGTAAATCCACTGGTTTTGGTCTGATTTATGATTCTGTAGAGAATGCCAAGAAGTTTGAGCCAAAGTACAGGCTCATCAGGAATGGACTGGACAAAAAGGTGGATAAGTCAAGGAAGCAACTCAAGGAAAGGAAGAACAGAGCTAAGAAGATCCGTGGAATAAAGAAGACCAAGGCTGGTGATGCTGCCAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

135

Amino Acids

15.61

Weight (kDa)

10.72

Isoelectric Point (pI)

10.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S24e PF01282 7 - 98 9.7e-40 Ribosomal protein S24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 17, 119, 190
AclWI GGATC 2 cut(s) 19, 352
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 149, 275
AgsI TTSAA 2 cut(s) 127, 184
AhdI GACNNNNNGTC 2 cut(s) 51, 107
AjnI CCWGG 3 cut(s) 32, 62, 94
AluBI AGCT 1 cut(s) 350
AluI AGCT 1 cut(s) 350
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 2 cut(s) 19, 352
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 392
Asp700I GAANNNNTTC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 398
BbsI GAAGAC 3 cut(s) 47, 106, 380
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 3 cut(s) 34, 64, 96
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 115
BfmI CTRYAG 1 cut(s) 243
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 3 cut(s) 34, 64, 96
BmeRI GACNNNNNGTC 2 cut(s) 51, 107
BmrFI CCNGG 3 cut(s) 34, 64, 96
BmsI GCATC 2 cut(s) 100, 379
BpiI GAAGAC 3 cut(s) 47, 106, 380
BpmI CTGGAG 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 114, 361, 378
Bse1I ACTGG 3 cut(s) 141, 223, 300
BseBI CCWGG 3 cut(s) 34, 64, 96
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 114, 361, 378
BseGI GGATG 2 cut(s) 91, 150
BseNI ACTGG 3 cut(s) 141, 223, 300
BseXI GCAGC 1 cut(s) 379
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 24, 357
BspACI CCGC 3 cut(s) 17, 119, 190
BspANI GGCC 1 cut(s) 5
BspDI ATCGAT 1 cut(s) 81
BspHI TCATGA 1 cut(s) 42
BspPI GGATC 2 cut(s) 19, 352
BsrI ACTGG 3 cut(s) 141, 223, 300
BssECI CCNNGG 3 cut(s) 114, 361, 378
BssMI GATC 2 cut(s) 24, 357
BssT1I CCWWGG 2 cut(s) 114, 378
Bst2UI CCWGG 3 cut(s) 34, 64, 96
BstDEI CTNAG 1 cut(s) 351
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 2 cut(s) 91, 150
BstKTI GATC 2 cut(s) 27, 360
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 24, 357
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 3 cut(s) 34, 64, 96
BstSCI CCNGG 3 cut(s) 32, 62, 94
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 3 cut(s) 47, 106, 380
BstX2I RGATCY 1 cut(s) 357
BstYI RGATCY 1 cut(s) 357
Bsu15I ATCGAT 1 cut(s) 81
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 2 cut(s) 91, 150
BtsIMutI CAGTG 1 cut(s) 216
CciI TCATGA 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 81
Csp6I GTAC 2 cut(s) 148, 274
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 1 cut(s) 43
CviJI RGCY 5 cut(s) 5, 268, 280, 350, 383
CviKI_1 RGCY 5 cut(s) 5, 268, 280, 350, 383
CviQI GTAC 2 cut(s) 148, 274
DdeI CTNAG 1 cut(s) 351
DpnI GATC 2 cut(s) 26, 359
DpnII GATC 2 cut(s) 24, 357
DriI GACNNNNNGTC 2 cut(s) 51, 107
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 2 cut(s) 51, 107
EciI GGCGGA 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 114, 378
EcoRII CCWGG 3 cut(s) 32, 62, 94
EcoT14I CCWWGG 2 cut(s) 114, 378
ErhI CCWWGG 2 cut(s) 114, 378
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 1 cut(s) 46
FaiI YATR 2 cut(s) 44, 237
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 2 cut(s) 78, 157
Fsp4HI GCNGC 1 cut(s) 393
GluI GCNGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 46
HinfI GANTC 1 cut(s) 239
HphI GGTGA 1 cut(s) 398
Hpy188I TCNGA 2 cut(s) 29, 231
Hpy188III TCNNGA 2 cut(s) 43, 286
HpyAV CCTTC 2 cut(s) 121, 151
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 46
Kzo9I GATC 2 cut(s) 24, 357
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 2 cut(s) 100, 379
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 19
MalI GATC 2 cut(s) 26, 359
MboI GATC 2 cut(s) 24, 357
MboII GAAGA 5 cut(s) 47, 111, 352, 367, 385
MflI RGATCY 1 cut(s) 357
MluCI AATT 1 cut(s) 71
MnlI CCTC 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 71
MspR9I CCNGG 3 cut(s) 34, 64, 96
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 3 cut(s) 34, 64, 96
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 2 cut(s) 24, 357
NlaIII CATG 1 cut(s) 46
PagI TCATGA 1 cut(s) 42
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 239
PfoI TCCNGGA 2 cut(s) 62, 94
PkrI GCNGC 1 cut(s) 394
Psp6I CCWGG 3 cut(s) 32, 62, 94
PspGI CCWGG 3 cut(s) 32, 62, 94
PsuI RGATCY 1 cut(s) 357
RsaI GTAC 2 cut(s) 149, 275
RsaNI GTAC 2 cut(s) 148, 274
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 2 cut(s) 24, 357
ScrFI CCNGG 3 cut(s) 34, 64, 96
SetI ASST 3 cut(s) 111, 309, 352
SfaNI GCATC 2 cut(s) 100, 379
SfcI CTRYAG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 1 cut(s) 71
SsiI CCGC 3 cut(s) 17, 119, 190
StyD4I CCNGG 3 cut(s) 32, 62, 94
StyI CCWWGG 2 cut(s) 114, 378
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 71
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 1 cut(s) 239
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 392
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.