Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005594.1

Orthogroup ID

OG0004000

Physical Location & Seq

Genomic Coordinates Reverse (-)

95718 .. 97450

Gene Structure 1733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005594.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggggaagatgctggaagcctttcagagttgttttatggccaccatttcagagctgtctggtataaatgccgtcttatatttctccgtattcaaaagtgccagaagaccatcaggccttgcaaatggcttcataggaattgcaactttatcaggatctgttgtcgcagtggctttgatggataaagtaggaaggaaggtgctactgttatgtagcttctttggcatggcaatagcaatggctgttcaagctgttgcagcaagttcttacccgtcaggctctgggtcaacgtacccatttgttggtggagctgatgtttgtattaacatttgccctagcagcgggaccagttctaggtcttcttttaccagaaatatttcctgggtgcatcagggcaaaggcaatggctttctctctatggggttggagatggtgactggaaagaacccaataaaaccggatgtggatgccattgatggcgagcagggaaggctgatcatgtgggtgatcagggagaaagtactgaatggaacttgtgctagtgaaattgaagctcggataggagacgtcatagaaccttcgtttgcaggtgaatgtgatgtgacaaagatggggattcacaaagaccaagagcattggcggaaaattagggacaggcggctttgctgtgtcatgatctatttaagaaactattgtacagagataaagttcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

238

Amino Acids

25.8

Weight (kDa)

8.73

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67300 AT1G67300 AT1G67300 AT1G67300 AT1G67300 AT1G67300 AT1G67300
fragaria_vesca	FvH4_1g04310 FvH4_1g04310 FvH4_1g04310 FvH4_1g04310 FvH4_1g04310
malus_domestica	MD02G1042800.v1.1 MD15G1181400.v1.1
prunus_persica	Prupe.7G234100_v2.0.a1
pyrus_communis	pycom02g03560 pycom15g16380
rosa_chinensis	RchiOBHm_Chr2g0089961
rosa_laevigata	RLG00000016064
rosa_multiflora	Rmu_sc0002384.1_g000011 Rmu_sc0005594.1_g000018
rosa_roxburghii	Rroxscaffold_2G00151510
rosa_rugosa	Rorug02G0003800 Rorug02G0003900 Rorug02G0004000
rosa_samantha	Rh1AG411000 Rh1AG411600 Rh1AG411800 Rh2AG049200 Rh2BG048100 Rh2CG050200 Rh2DG049300
rosa_wichuraiana	Rw2G004100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	578
AatII	GACGTC	1 cut(s)	570
Acc36I	ACCTGC	1 cut(s)	578
AccB7I	CCANNNNNTGG	1 cut(s)	302
AciI	CCGC	3 cut(s)	342, 640, 658
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	567
AfaI	GTAC	3 cut(s)	293, 522, 697
AfiI	CCNNNNNNNGG	3 cut(s)	302, 341, 354
AgsI	TTSAA	3 cut(s)	94, 248, 551
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	5 cut(s)	55, 216, 251, 311, 554
AluI	AGCT	5 cut(s)	55, 216, 251, 311, 554
Alw26I	GTCTC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	163
AlwNI	CAGNNNCTG	2 cut(s)	158, 281
AoxI	GGCC	2 cut(s)	39, 115
ApeKI	GCWGC	2 cut(s)	257, 339
Asp700I	GAANNNNTTC	2 cut(s)	21, 376
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	3 cut(s)	445, 517, 602
AvaII	GGWCC	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	41
BbsI	GAAGAC	2 cut(s)	112, 351
BbvI	GCAGC	2 cut(s)	269, 351
BccI	CCATC	5 cut(s)	118, 172, 424, 470, 604
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	382
BclI	TGATCA	2 cut(s)	495, 507
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	3 cut(s)	336, 354, 540
BfuAI	ACCTGC	1 cut(s)	578
BisI	GCNGC	3 cut(s)	258, 340, 659
BlsI	GCNGC	3 cut(s)	259, 341, 660
BmcAI	AGTACT	1 cut(s)	522
Bme1390I	CCNGG	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	382
BmsI	GCATC	2 cut(s)	397, 457
BpiI	GAAGAC	2 cut(s)	112, 351
BsaHI	GRCGYC	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 341, 354
Bse1I	ACTGG	2 cut(s)	348, 442
Bse3DI	GCAATG	2 cut(s)	243, 409
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	466, 472
BseLI	CCNNNNNNNGG	3 cut(s)	302, 341, 354
BseMI	GCAATG	2 cut(s)	243, 409
BseNI	ACTGG	2 cut(s)	348, 442
BseXI	GCAGC	2 cut(s)	269, 351
BshFI	GGCC	2 cut(s)	41, 117
BsiSI	CCGG	1 cut(s)	458
BslFI	GGGAC	2 cut(s)	358, 665
BslI	CCNNNNNNNGG	3 cut(s)	302, 341, 354
BsmAI	GTCTC	1 cut(s)	558
BsmBI	CGTCTC	1 cut(s)	558
BsmFI	GGGAC	2 cut(s)	358, 665
BsnI	GGCC	2 cut(s)	41, 117
Bsp1407I	TGTACA	1 cut(s)	695
Bsp143I	GATC	4 cut(s)	155, 495, 507, 675
BspACI	CCGC	3 cut(s)	342, 640, 658
BspANI	GGCC	2 cut(s)	41, 117
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	1 cut(s)	346
BspMI	ACCTGC	1 cut(s)	578
BspPI	GGATC	1 cut(s)	163
BsrDI	GCAATG	2 cut(s)	243, 409
BsrGI	TGTACA	1 cut(s)	695
BsrI	ACTGG	2 cut(s)	348, 442
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	4 cut(s)	155, 495, 507, 675
BssNI	GRCGYC	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	567
BstAUI	TGTACA	1 cut(s)	695
BstC8I	GCNNGC	1 cut(s)	482
BstF5I	GGATG	2 cut(s)	466, 472
BstKTI	GATC	4 cut(s)	158, 498, 510, 678
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	4 cut(s)	155, 495, 507, 675
BstMWI	GCNNNNNNNGC	5 cut(s)	222, 248, 257, 339, 490
BstNI	CCWGG	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	269, 351
BstV2I	GAAGAC	2 cut(s)	112, 351
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	41, 117
BtsCI	GGATG	2 cut(s)	466, 472
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	578
Cac8I	GCNNGC	1 cut(s)	482
CaiI	CAGNNNCTG	2 cut(s)	158, 281
CciI	TCATGA	1 cut(s)	672
Cfr13I	GGNCC	1 cut(s)	345
Csp6I	GTAC	3 cut(s)	292, 521, 696
CviAII	CATG	3 cut(s)	226, 499, 673
CviQI	GTAC	3 cut(s)	292, 521, 696
DpnI	GATC	4 cut(s)	157, 497, 509, 677
DpnII	GATC	4 cut(s)	155, 495, 507, 675
EaeI	YGGCCR	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	655
Eco147I	AGGCCT	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	3 cut(s)	229, 502, 676
FaqI	GGGAC	2 cut(s)	358, 665
FatI	CATG	3 cut(s)	225, 498, 672
FauI	CCCGC	1 cut(s)	335
FbaI	TGATCA	2 cut(s)	495, 507
Fnu4HI	GCNGC	3 cut(s)	258, 340, 659
FokI	GGATG	2 cut(s)	473, 479
Fsp4HI	GCNGC	3 cut(s)	258, 340, 659
FspBI	CTAG	3 cut(s)	336, 354, 540
GluI	GCNGC	3 cut(s)	258, 340, 659
HaeIII	GGCC	2 cut(s)	41, 117
HapII	CCGG	1 cut(s)	458
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	3 cut(s)	229, 502, 676
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	1 cut(s)	616
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	3 cut(s)	445, 517, 602
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	3 cut(s)	27, 52, 558
Hpy188III	TCNNGA	2 cut(s)	153, 673
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	4 cut(s)	186, 190, 483, 588
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	2 cut(s)	290, 567
HpyCH4V	TGCA	5 cut(s)	122, 143, 257, 388, 587
HpyF10VI	GCNNNNNNNGC	5 cut(s)	222, 248, 257, 339, 490
HpySE526I	ACGT	2 cut(s)	290, 567
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	3 cut(s)	229, 502, 676
Ksp22I	TGATCA	2 cut(s)	495, 507
Kzo9I	GATC	4 cut(s)	155, 495, 507, 675
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	2 cut(s)	269, 351
LweI	GCATC	2 cut(s)	397, 457
MaeI	CTAG	3 cut(s)	336, 354, 540
MaeII	ACGT	2 cut(s)	290, 567
MaeIII	GTNAC	2 cut(s)	433, 601
MalI	GATC	4 cut(s)	157, 497, 509, 677
MboI	GATC	4 cut(s)	155, 495, 507, 675
MboII	GAAGA	3 cut(s)	19, 117, 351
MflI	RGATCY	1 cut(s)	155
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	3 cut(s)	138, 546, 645
MluNI	TGGCCA	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	405
Mox20I	TGGCCA	1 cut(s)	41
MroXI	GAANNNNTTC	2 cut(s)	21, 376
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	2 cut(s)	324, 683
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	382
MwoI	GCNNNNNNNGC	5 cut(s)	222, 248, 257, 339, 490
NdeII	GATC	4 cut(s)	155, 495, 507, 675
NlaIII	CATG	3 cut(s)	229, 502, 676
NlaIV	GGNNCC	1 cut(s)	346
NmuCI	GTSAC	2 cut(s)	433, 601
PagI	TCATGA	1 cut(s)	672
PaqCI	CACCTGC	1 cut(s)	578
PceI	AGGCCT	1 cut(s)	117
PdmI	GAANNNNTTC	2 cut(s)	21, 376
PfeI	GAWTC	1 cut(s)	616
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	259, 341, 660
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	345
PstNI	CAGNNNCTG	2 cut(s)	158, 281
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	3 cut(s)	293, 522, 697
RsaNI	GTAC	3 cut(s)	292, 521, 696
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	2 cut(s)	324, 683
SatI	GCNGC	3 cut(s)	258, 340, 659
Sau3AI	GATC	4 cut(s)	155, 495, 507, 675
Sau96I	GGNCC	1 cut(s)	345
ScaI	AGTACT	1 cut(s)	522
ScrFI	CCNGG	1 cut(s)	382
SfaNI	GCATC	2 cut(s)	397, 457
SinI	GGWCC	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	3 cut(s)	138, 546, 645
SseBI	AGGCCT	1 cut(s)	117
SsiI	CCGC	3 cut(s)	342, 640, 658
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	3 cut(s)	336, 354, 540
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	2 cut(s)	293, 570
TasI	AATT	3 cut(s)	138, 546, 645
TatI	WGTACW	2 cut(s)	520, 695
TauI	GCSGC	1 cut(s)	661
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	2 cut(s)	324, 683
Tru9I	TTAA	2 cut(s)	324, 683
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	2 cut(s)	433, 601
TseI	GCWGC	2 cut(s)	257, 339
Tsp45I	GTSAC	2 cut(s)	433, 601
TspDTI	ATGAA	1 cut(s)	121
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	345
XmnI	GAANNNNTTC	2 cut(s)	21, 376
XspI	CTAG	3 cut(s)	336, 354, 540
ZraI	GACGTC	1 cut(s)	568
ZrmI	AGTACT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.