RchiOBHm_Chr2g0089961
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
3992603 .. 3997856
5254 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46524

Sequence Viewer

Length: 1503 bp
ATGTGGGTCCGCCAACGTGAACCATACTCGATGTACAAGCGTGCGTCATCGAGAGATTATATGAATACCACTGATATGGAATCAAAAGAGTTTGTAGATACTCTTGACATGGAAGACAACTCAGCTCTTTTGCAGAAAAGTATGGTTCCAGAACTTTCAAACCCCTCATGGAGGCTTTCCTTACCCCATGTACTAGTGGCAACTATATCTTCATTCTTGTTTGGGTACCATCTCGGAGTAGTCAATGAACCACTTGAAAGCATTTCTGCAGATCTTGGTTTCAAGGGGAATGCCTTGGCTGAAGGTCTGGTGGTGAGTACATGCTTGGGAGGTGCCTTTCTTGGATCTTTATTTAGTGGATGGATAGCTGATGGAGTTGGACGTCGTAGGGCTTTTCAACTGTGTGCATTGCCCATGATTATTGGTGCTGTTATGAGTGCAACAGCCAAAACTCTTGCTGGTATGCTTATAGGAAGGTTATTTGTTGGGACTGGTATGGGTCTGGGCCCTCCTGTTGCTTCTCTTTATGTAACAGAGGTTTCTCCTTCTTTTGTGAGGGGTACTTACGGTAGTTTCATCCAGATTGCAACATGCCTTGGACTTATGGGGGCTCTTCTTGTTGGAATCCCTGTGAAAGAAATTGCGGGCTGGTGGCGTGTTTGTTTTTGGGTATCTACAATTCCAGCTGCAATACTTGCTCTAGCCATGGTATTCTGTGCAGAGAGTCCACACTGGCTACATAAGCAAGGAAGAACTTACGAGGCAGAAGCTGCATTTGAGAAACTCCTTGGTGGATCACATGTCAAAACTGCAATGGTACAGTTAAACAAGGTGGACAGTGGAGATGAGACAGATGCTGTAAGCCTTTCAGAGTTGTTCTATGGCCGCCATTTCAGAGTTGTTTTTATTGGGTCAACCCTATTTGCTTTACAACAGCTATCTGGTATAAATGCTGTCTTTTATTTCTCCTCAACTGTATTCAAAAGTGCTGGAGTACCATCAGGCCTTGCTAATGCCTTCATAGGAATTGCAAATATATCAGGATCTGTTGTCGCAATGGCTTTGATGGATAAAGTAGGAAGGAAGGTGCTACTGTTATGGAGCTTCTTTGGCATGGCAATGGCAATGGCTGTTCAAGTAGTTGCAGCAAGTTCTTATTCTTCAGGCTCTGGGTCACTGTACCTATCTGTTGGTGGAATGCTGATGTTTGTCTTAACATTTGCCCTAGGAGCCGGACCAGTTCCAGGTCTCCTTTTACCAGAAATATTTCCAGGTCGCATCAGGGCAAAAGCAATGGCTGTCTGTATGTCAGTGCATTGGGTGATAAATTTCTTCGTGGGTTTGCTGTTCTTGCAACTATTAGAAAATCTTGGCCCACAGCTTCTGTATTCTATGTTTGGTACCGTTTGCATGATGGCTGTGGTTTTTGTGAAACGGAATGTGGTGGAAACTAAAGGAAAATCGCTCCAAGAGATTGAGATAGCGCTCCTTCCACAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

500

Amino Acids

53.85

Weight (kDa)

8.1

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 64 - 494 1.7e-93 Sugar (and other) transporter
MFS_1 PF07690 72 - 408 1.1e-20 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 385
Acc65I GGTACC 2 cut(s) 225, 1400
AccB1I GGYRCC 3 cut(s) 225, 332, 1400
AciI CCGC 3 cut(s) 10, 644, 886
AclWI GGATC 3 cut(s) 352, 802, 1051
AcoI YGGCCR 1 cut(s) 883
AcsI RAATTY 1 cut(s) 1327
AcuI CTGAAG 2 cut(s) 321, 1146
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 9 cut(s) 35, 192, 227, 319, 562, 819, 996, 1181, 1402
AfeI AGCGCT 1 cut(s) 1485
AfiI CCNNNNNNNGG 2 cut(s) 171, 1244
AflIII ACRYGT 1 cut(s) 799
AgsI TTSAA 6 cut(s) 159, 257, 283, 398, 982, 1136
AhlI ACTAGT 1 cut(s) 193
AjnI CCWGG 2 cut(s) 1243, 1270
AluBI AGCT 7 cut(s) 125, 368, 686, 770, 937, 1104, 1381
AluI AGCT 7 cut(s) 125, 368, 686, 770, 937, 1104, 1381
Alw26I GTCTC 2 cut(s) 842, 1253
AlwI GGATC 3 cut(s) 352, 802, 1051
AlwNI CAGNNNCTG 5 cut(s) 770, 857, 1046, 1169, 1384
Aor51HI AGCGCT 1 cut(s) 1485
AoxI GGCC 4 cut(s) 505, 883, 1003, 1372
ApaI GGGCCC 1 cut(s) 509
ApeKI GCWGC 3 cut(s) 686, 770, 1145
ApoI RAATTY 1 cut(s) 1327
Asp700I GAANNNNTTC 1 cut(s) 1266
Asp718I GGTACC 2 cut(s) 225, 1400
AspA2I CCTAGG 1 cut(s) 1225
AspLEI GCGC 1 cut(s) 1486
AspS9I GGNCC 5 cut(s) 7, 505, 506, 1235, 1373
AsuHPI GGTGA 2 cut(s) 325, 1333
AvaII GGWCC 2 cut(s) 7, 1235
AvrII CCTAGG 1 cut(s) 1225
BaeGI GKGCMC 1 cut(s) 509
BanI GGYRCC 3 cut(s) 225, 332, 1400
BanII GRGCYC 2 cut(s) 509, 613
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 673, 757, 1157
BccI CCATC 6 cut(s) 237, 354, 365, 1006, 1060, 1408
BciT130I CCWGG 2 cut(s) 1245, 1272
BcoDI GTCTC 2 cut(s) 842, 1253
BcuI ACTAGT 1 cut(s) 193
BfaI CTAG 3 cut(s) 194, 701, 1226
BfmI CTRYAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 1487
BglII AGATCT 1 cut(s) 271
BisI GCNGC 4 cut(s) 687, 771, 886, 1146
BlnI CCTAGG 1 cut(s) 1225
BlsI GCNGC 4 cut(s) 688, 772, 887, 1147
Bme1390I CCNGG 2 cut(s) 1245, 1272
Bme18I GGWCC 2 cut(s) 7, 1235
BmgT120I GGNCC 5 cut(s) 7, 505, 506, 1235, 1373
BmiI GGNNCC 7 cut(s) 8, 147, 227, 334, 507, 1231, 1402
BmrFI CCNGG 2 cut(s) 1245, 1272
BmsI GCATC 2 cut(s) 844, 1287
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 1011
BsaHI GRCGYC 1 cut(s) 382
BsaI GGTCTC 1 cut(s) 1253
BsaJI CCNNGG 5 cut(s) 294, 595, 705, 787, 1225
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 1244
Bse1I ACTGG 3 cut(s) 496, 737, 1238
Bse3DI GCAATG 6 cut(s) 407, 819, 1062, 1125, 1131, 1299
BseBI CCWGG 2 cut(s) 1245, 1272
BseDI CCNNGG 5 cut(s) 294, 595, 705, 787, 1225
BseGI GGATG 2 cut(s) 365, 576
BseLI CCNNNNNNNGG 2 cut(s) 171, 1244
BseMI GCAATG 6 cut(s) 407, 819, 1062, 1125, 1131, 1299
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 3 cut(s) 496, 737, 1238
BseRI GAGGAG 1 cut(s) 958
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 3 cut(s) 673, 757, 1157
BsgI GTGCAG 1 cut(s) 738
BshFI GGCC 4 cut(s) 507, 885, 1005, 1374
BshNI GGYRCC 3 cut(s) 225, 332, 1400
BsiSI CCGG 1 cut(s) 1233
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 2 cut(s) 171, 1244
BsmAI GTCTC 2 cut(s) 842, 1253
BsmFI GGGAC 1 cut(s) 502
BsmI GAATGC 2 cut(s) 295, 1203
BsnI GGCC 4 cut(s) 507, 885, 1005, 1374
Bso31I GGTCTC 1 cut(s) 1253
Bsp120I GGGCCC 1 cut(s) 505
Bsp1286I GDGCHC 2 cut(s) 509, 613
Bsp1407I TGTACA 1 cut(s) 33
Bsp143I GATC 4 cut(s) 271, 344, 794, 1043
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 3 cut(s) 10, 644, 886
BspANI GGCC 4 cut(s) 507, 885, 1005, 1374
BspCNI CTCAG 1 cut(s) 134
BspLI GGNNCC 7 cut(s) 8, 147, 227, 334, 507, 1231, 1402
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 3 cut(s) 352, 802, 1051
BspQI GCTCTTC 1 cut(s) 618
BspT107I GGYRCC 3 cut(s) 225, 332, 1400
BspTNI GGTCTC 1 cut(s) 1253
BsrDI GCAATG 6 cut(s) 407, 819, 1062, 1125, 1131, 1299
BsrGI TGTACA 1 cut(s) 33
BsrI ACTGG 3 cut(s) 496, 737, 1238
BssECI CCNNGG 5 cut(s) 294, 595, 705, 787, 1225
BssMI GATC 4 cut(s) 271, 344, 794, 1043
BssNI GRCGYC 1 cut(s) 382
BssT1I CCWWGG 5 cut(s) 294, 595, 705, 787, 1225
Bst2UI CCWGG 2 cut(s) 1245, 1272
Bst4CI ACNGT 8 cut(s) 402, 569, 822, 839, 976, 1095, 1179, 1405
Bst6I CTCTTC 1 cut(s) 618
BstACI GRCGYC 1 cut(s) 382
BstAPI GCANNNNNTGC 2 cut(s) 695, 770
BstAUI TGTACA 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 42, 646
BstDEI CTNAG 1 cut(s) 121
BstDSI CCRYGG 1 cut(s) 705
BstENI CCTNNNNNAGG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 365, 576
BstH2I RGCGCY 1 cut(s) 1487
BstHHI GCGC 1 cut(s) 1486
BstKTI GATC 4 cut(s) 274, 347, 797, 1046
BstMAI GTCTC 2 cut(s) 842, 1253
BstMBI GATC 4 cut(s) 271, 344, 794, 1043
BstMWI GCNNNNNNNGC 6 cut(s) 695, 742, 770, 1110, 1229, 1351
BstNI CCWGG 2 cut(s) 1245, 1272
BstNSI RCATGY 3 cut(s) 324, 594, 803
BstSCI CCNGG 2 cut(s) 1243, 1270
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 509
BstV1I GCAGC 3 cut(s) 673, 757, 1157
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 3 cut(s) 271, 344, 1043
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 3 cut(s) 271, 344, 1043
BsuRI GGCC 4 cut(s) 507, 885, 1005, 1374
BtgI CCRYGG 1 cut(s) 705
BtsCI GGATG 2 cut(s) 365, 576
BtsIMutI CAGTG 5 cut(s) 69, 730, 844, 1175, 1317
Cac8I GCNNGC 2 cut(s) 42, 646
CaiI CAGNNNCTG 5 cut(s) 770, 857, 1046, 1169, 1384
CfoI GCGC 1 cut(s) 1486
Cfr13I GGNCC 5 cut(s) 7, 505, 506, 1235, 1373
CseI GACGC 1 cut(s) 33
Csp6I GTAC 9 cut(s) 34, 191, 226, 318, 561, 818, 995, 1180, 1401
CviQI GTAC 9 cut(s) 34, 191, 226, 318, 561, 818, 995, 1180, 1401
DdeI CTNAG 1 cut(s) 121
DpnI GATC 4 cut(s) 273, 346, 796, 1045
DpnII GATC 4 cut(s) 271, 344, 794, 1043
EaeI YGGCCR 1 cut(s) 883
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco130I CCWWGG 5 cut(s) 294, 595, 705, 787, 1225
Eco147I AGGCCT 1 cut(s) 1005
Eco24I GRGCYC 2 cut(s) 509, 613
Eco31I GGTCTC 1 cut(s) 1253
Eco47I GGWCC 2 cut(s) 7, 1235
Eco47III AGCGCT 1 cut(s) 1485
Eco57I CTGAAG 2 cut(s) 321, 1146
EcoNI CCTNNNNNAGG 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 506
EcoRII CCWGG 2 cut(s) 1243, 1270
EcoT14I CCWWGG 5 cut(s) 294, 595, 705, 787, 1225
EcoT38I GRGCYC 2 cut(s) 509, 613
ErhI CCWWGG 5 cut(s) 294, 595, 705, 787, 1225
FaqI GGGAC 1 cut(s) 502
FauI CCCGC 1 cut(s) 637
Fnu4HI GCNGC 4 cut(s) 687, 771, 886, 1146
FokI GGATG 2 cut(s) 372, 563
FriOI GRGCYC 2 cut(s) 509, 613
Fsp4HI GCNGC 4 cut(s) 687, 771, 886, 1146
FspBI CTAG 3 cut(s) 194, 701, 1226
GlaI GCGC 1 cut(s) 1485
GluI GCNGC 4 cut(s) 687, 771, 886, 1146
GsuI CTGGAG 1 cut(s) 1011
HaeII RGCGCY 1 cut(s) 1487
HaeIII GGCC 4 cut(s) 507, 885, 1005, 1374
HapII CCGG 1 cut(s) 1233
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 1486
Hin1I GRCGYC 1 cut(s) 382
Hin6I GCGC 1 cut(s) 1484
HinP1I GCGC 1 cut(s) 1484
HincII GTYRAC 1 cut(s) 915
HindII GTYRAC 1 cut(s) 915
HinfI GANTC 3 cut(s) 80, 624, 724
HpaII CCGG 1 cut(s) 1233
HphI GGTGA 2 cut(s) 325, 1333
Hpy166II GTNNAC 4 cut(s) 20, 728, 835, 915
Hpy188I TCNGA 3 cut(s) 236, 871, 896
Hpy188III TCNNGA 5 cut(s) 51, 104, 149, 580, 1041
Hpy8I GTNNAC 4 cut(s) 20, 728, 835, 915
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 7 cut(s) 296, 468, 555, 1027, 1074, 1078, 1499
HpyCH4III ACNGT 8 cut(s) 402, 569, 822, 839, 976, 1095, 1179, 1405
HpyCH4IV ACGT 2 cut(s) 16, 382
HpyF10VI GCNNNNNNNGC 6 cut(s) 695, 742, 770, 1110, 1229, 1351
HpyF3I CTNAG 1 cut(s) 121
HpySE526I ACGT 2 cut(s) 16, 382
Hsp92I GRCGYC 1 cut(s) 382
HspAI GCGC 1 cut(s) 1484
KpnI GGTACC 2 cut(s) 229, 1404
Kzo9I GATC 4 cut(s) 271, 344, 794, 1043
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 4 cut(s) 1101, 1229, 1470, 1491
Lsp1109I GCAGC 3 cut(s) 673, 757, 1157
LweI GCATC 2 cut(s) 844, 1287
MaeI CTAG 3 cut(s) 194, 701, 1226
MaeII ACGT 2 cut(s) 16, 382
MaeIII GTNAC 2 cut(s) 529, 1173
MalI GATC 4 cut(s) 273, 346, 796, 1045
MboI GATC 4 cut(s) 271, 344, 794, 1043
MboII GAAGA 6 cut(s) 125, 201, 605, 762, 1152, 1324
MflI RGATCY 3 cut(s) 271, 344, 1043
MhlI GDGCHC 2 cut(s) 509, 613
MluCI AATT 4 cut(s) 639, 678, 1026, 1327
MlyI GAGTC 1 cut(s) 733
MmeI TCCRAC 2 cut(s) 358, 601
MnlI CCTC 8 cut(s) 165, 175, 323, 519, 529, 549, 754, 979
MroXI GAANNNNTTC 1 cut(s) 1266
MseI TTAA 2 cut(s) 824, 1214
MslI CAYNNNNRTG 2 cut(s) 74, 1118
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 1 cut(s) 1233
MspR9I CCNGG 2 cut(s) 1245, 1272
Mva1269I GAATGC 2 cut(s) 295, 1203
MvaI CCWGG 2 cut(s) 1245, 1272
MwoI GCNNNNNNNGC 6 cut(s) 695, 742, 770, 1110, 1229, 1351
NcoI CCATGG 1 cut(s) 705
NdeII GATC 4 cut(s) 271, 344, 794, 1043
NlaIV GGNNCC 7 cut(s) 8, 147, 227, 334, 507, 1231, 1402
NmuCI GTSAC 1 cut(s) 1173
NspI RCATGY 3 cut(s) 324, 594, 803
PceI AGGCCT 1 cut(s) 1005
PciI ACATGT 1 cut(s) 799
PciSI GCTCTTC 1 cut(s) 618
PctI GAATGC 2 cut(s) 295, 1203
PdmI GAANNNNTTC 1 cut(s) 1266
PfeI GAWTC 2 cut(s) 80, 624
PkrI GCNGC 4 cut(s) 688, 772, 887, 1147
PleI GAGTC 1 cut(s) 732
PpsI GAGTC 1 cut(s) 732
PscI ACATGT 1 cut(s) 799
Psp6I CCWGG 2 cut(s) 1243, 1270
PspGI CCWGG 2 cut(s) 1243, 1270
PspN4I GGNNCC 7 cut(s) 8, 147, 227, 334, 507, 1231, 1402
PspOMI GGGCCC 1 cut(s) 505
PspPI GGNCC 5 cut(s) 7, 505, 506, 1235, 1373
PstI CTGCAG 1 cut(s) 271
PstNI CAGNNNCTG 5 cut(s) 770, 857, 1046, 1169, 1384
PsuI RGATCY 3 cut(s) 271, 344, 1043
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 9 cut(s) 35, 192, 227, 319, 562, 819, 996, 1181, 1402
RsaNI GTAC 9 cut(s) 34, 191, 226, 318, 561, 818, 995, 1180, 1401
RseI CAYNNNNRTG 2 cut(s) 74, 1118
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 2 cut(s) 824, 1214
SatI GCNGC 4 cut(s) 687, 771, 886, 1146
Sau3AI GATC 4 cut(s) 271, 344, 794, 1043
Sau96I GGNCC 5 cut(s) 7, 505, 506, 1235, 1373
SchI GAGTC 1 cut(s) 733
ScrFI CCNGG 2 cut(s) 1245, 1272
SduI GDGCHC 2 cut(s) 509, 613
SfaNI GCATC 2 cut(s) 844, 1287
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 2 cut(s) 7, 1235
SmiMI CAYNNNNRTG 2 cut(s) 74, 1118
SpeI ACTAGT 1 cut(s) 193
Sse9I AATT 4 cut(s) 639, 678, 1026, 1327
SseBI AGGCCT 1 cut(s) 1005
SsiI CCGC 3 cut(s) 10, 644, 886
SspI AATATT 1 cut(s) 1266
SspMI CTAG 3 cut(s) 194, 701, 1226
StuI AGGCCT 1 cut(s) 1005
StyD4I CCNGG 2 cut(s) 1243, 1270
StyI CCWWGG 5 cut(s) 294, 595, 705, 787, 1225
TaaI ACNGT 8 cut(s) 402, 569, 822, 839, 976, 1095, 1179, 1405
TaiI ACGT 2 cut(s) 19, 385
TaqI TCGA 2 cut(s) 29, 50
TasI AATT 4 cut(s) 639, 678, 1026, 1327
TatI WGTACW 3 cut(s) 33, 190, 317
TauI GCSGC 1 cut(s) 888
TfiI GAWTC 2 cut(s) 80, 624
Tru1I TTAA 2 cut(s) 824, 1214
Tru9I TTAA 2 cut(s) 824, 1214
TscAI CASTG 5 cut(s) 76, 737, 844, 1182, 1317
TseFI GTSAC 1 cut(s) 1173
TseI GCWGC 3 cut(s) 686, 770, 1145
Tsp45I GTSAC 1 cut(s) 1173
TspDTI ATGAA 5 cut(s) 77, 201, 261, 565, 1009
TspGWI ACGGA 1 cut(s) 1450
TspRI CASTG 5 cut(s) 76, 737, 844, 1182, 1317
VpaK11BI GGWCC 2 cut(s) 7, 1235
XagI CCTNNNNNAGG 1 cut(s) 169
XapI RAATTY 1 cut(s) 1327
XceI RCATGY 3 cut(s) 324, 594, 803
XmaJI CCTAGG 1 cut(s) 1225
XmnI GAANNNNTTC 1 cut(s) 1266
XspI CTAG 3 cut(s) 194, 701, 1226
ZraI GACGTC 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.