Rh1AG411800
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
64510546 .. 64513313
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG411800.1

Sequence Viewer

Length: 729 bp
ATGAACCACTTGAAAGCATTTCTGCAGAGAATCCCTTGGCTGAAGGTCTGGGCTTTTCAGCTGTGTGCATTGCCCATGATAATTGGTGCTTTTATGAGTGCAACAGCCAGAACTCTTGCTGGTATGCTTATAGGAAGGTTATTTGTTGGGACTGGTATGGGTCCGGGGGCTCCTGTTGCTTCTCTTTATATAACAGAGGTTTCTTCTTCTTTTGTGAGGGGTACTTACGGTAGTTTCATCCAGATTGCAACATGCCTTGGACTTACGGCGGCTTTTATTGTTGGAATCCCTGAGAAAGAAATTGCGGGCTGGTGGCGTAGAGTCCACATTGGCTACATAAGCAAGGAAGAACTTACAAGGCAGAAGCTGCATTTGAGAAACTCCTTGGTCGTTCACATGTCAAAACTGCAGTGGTACAATTTACCAAGTTGGACAGTGGAGATGGGGAAGATGCTGGAAGCCTTTCAGAGTTGTTTTATGGCCACCATTTCAGAGCTGTCTGGTATAAATGCCGTCTTATATTTCTCCGTATTCAAAAGTGCCAGAAGACCATCAGGCCTTGCAAATGGCTTCATAGGAATTGCAACTTTATCAGGATCTGTTGTCGCAGCGGCTTTGATGGATAAAGTAGGAAGGAAGGTGCTACTGTTATGTAGCTTCTTTGGCATGGCAATAGCAATGGCTGTTCAAGCTGTTGCAGCAAGTTCTTACCCATCAGGTTTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

242

Amino Acids

26.3

Weight (kDa)

9.88

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 18 - 103 1e-08 Sugar (and other) transporter
Sugar_tr PF00083 153 - 233 1.9e-10 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 269, 305, 611
AclWI GGATC 1 cut(s) 604
AcoI YGGCCR 1 cut(s) 480
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 2 cut(s) 223, 416
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 3 cut(s) 13, 535, 689
AluBI AGCT 5 cut(s) 61, 367, 496, 657, 692
AluI AGCT 5 cut(s) 61, 367, 496, 657, 692
AlwI GGATC 1 cut(s) 604
AlwNI CAGNNNCTG 2 cut(s) 367, 599
AoxI GGCC 2 cut(s) 480, 556
ApeKI GCWGC 3 cut(s) 367, 608, 698
Asp700I GAANNNNTTC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 161
BalI TGGCCA 1 cut(s) 482
BanII GRGCYC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 553
BbvI GCAGC 3 cut(s) 354, 620, 710
BccI CCATC 4 cut(s) 436, 559, 613, 721
BceAI ACGGC 2 cut(s) 282, 497
BcnI CCSGG 1 cut(s) 165
BfmI CTRYAG 2 cut(s) 23, 407
BisI GCNGC 5 cut(s) 270, 368, 609, 612, 699
BlsI GCNGC 5 cut(s) 271, 369, 610, 613, 700
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 162, 171
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 553
BpuMI CCSGG 1 cut(s) 165
BsaJI CCNNGG 4 cut(s) 35, 164, 256, 384
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 2 cut(s) 68, 684
BseDI CCNNGG 4 cut(s) 35, 164, 256, 384
BseGI GGATG 1 cut(s) 237
BseMI GCAATG 2 cut(s) 68, 684
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 157
BseXI GCAGC 3 cut(s) 354, 620, 710
BshFI GGCC 2 cut(s) 482, 558
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 2 cut(s) 482, 558
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 596
BspACI CCGC 3 cut(s) 269, 305, 611
BspANI GGCC 2 cut(s) 482, 558
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 162, 171
BspMAI CTGCAG 2 cut(s) 27, 411
BspPI GGATC 1 cut(s) 604
BsrDI GCAATG 2 cut(s) 68, 684
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 4 cut(s) 35, 164, 256, 384
BssMI GATC 1 cut(s) 596
BssT1I CCWWGG 3 cut(s) 35, 256, 384
Bst4CI ACNGT 3 cut(s) 230, 436, 648
BstAPI GCANNNNNTGC 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 237
BstKTI GATC 1 cut(s) 599
BstMBI GATC 1 cut(s) 596
BstMWI GCNNNNNNNGC 6 cut(s) 176, 339, 367, 663, 689, 698
BstNSI RCATGY 2 cut(s) 255, 400
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 2 cut(s) 23, 407
BstV1I GCAGC 3 cut(s) 354, 620, 710
BstV2I GAAGAC 1 cut(s) 553
BstX2I RGATCY 1 cut(s) 596
BstYI RGATCY 1 cut(s) 596
BsuRI GGCC 2 cut(s) 482, 558
BtsCI GGATG 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 416
BtsIMutI CAGTG 2 cut(s) 416, 441
Cac8I GCNNGC 1 cut(s) 307
CaiI CAGNNNCTG 2 cut(s) 367, 599
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 222, 415
CviAII CATG 4 cut(s) 76, 252, 397, 667
CviQI GTAC 2 cut(s) 222, 415
DdeI CTNAG 1 cut(s) 291
DpnI GATC 1 cut(s) 598
DpnII GATC 1 cut(s) 596
EaeI YGGCCR 1 cut(s) 480
Eco130I CCWWGG 3 cut(s) 35, 256, 384
Eco147I AGGCCT 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 62
EcoT14I CCWWGG 3 cut(s) 35, 256, 384
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 3 cut(s) 35, 256, 384
FaeI CATG 4 cut(s) 79, 255, 400, 670
FaqI GGGAC 1 cut(s) 163
FatI CATG 4 cut(s) 75, 251, 396, 666
FauI CCCGC 1 cut(s) 298
Fnu4HI GCNGC 5 cut(s) 270, 368, 609, 612, 699
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 5 cut(s) 270, 368, 609, 612, 699
GluI GCNGC 5 cut(s) 270, 368, 609, 612, 699
HaeIII GGCC 2 cut(s) 482, 558
HapII CCGG 1 cut(s) 164
Hin1II CATG 4 cut(s) 79, 255, 400, 670
HinfI GANTC 3 cut(s) 30, 285, 321
HpaII CCGG 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 325, 394
Hpy188I TCNGA 2 cut(s) 468, 493
Hpy188III TCNNGA 2 cut(s) 241, 594
Hpy8I GTNNAC 2 cut(s) 325, 394
HpyAV CCTTC 4 cut(s) 37, 129, 627, 631
HpyCH4III ACNGT 3 cut(s) 230, 436, 648
HpyCH4V TGCA 9 cut(s) 25, 68, 101, 248, 370, 409, 563, 584, 698
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 339, 367, 663, 689, 698
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 4 cut(s) 79, 255, 400, 670
Kzo9I GATC 1 cut(s) 596
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 3 cut(s) 354, 620, 710
LweI GCATC 1 cut(s) 441
MalI GATC 1 cut(s) 598
MboI GATC 1 cut(s) 596
MboII GAAGA 5 cut(s) 195, 198, 359, 460, 558
MflI RGATCY 1 cut(s) 596
MhlI GDGCHC 1 cut(s) 172
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 4 cut(s) 81, 300, 418, 579
MluNI TGGCCA 1 cut(s) 482
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 2 cut(s) 262, 410
MnlI CCTC 2 cut(s) 190, 210
Mox20I TGGCCA 1 cut(s) 482
MroXI GAANNNNTTC 1 cut(s) 462
MscI TGGCCA 1 cut(s) 482
MseI TTAA 1 cut(s) 727
Msp20I TGGCCA 1 cut(s) 482
MspA1I CMGCKG 2 cut(s) 61, 611
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 165
MwoI GCNNNNNNNGC 6 cut(s) 176, 339, 367, 663, 689, 698
NciI CCSGG 1 cut(s) 165
NdeII GATC 1 cut(s) 596
NlaIII CATG 4 cut(s) 79, 255, 400, 670
NlaIV GGNNCC 2 cut(s) 162, 171
NspI RCATGY 2 cut(s) 255, 400
PceI AGGCCT 1 cut(s) 558
PciI ACATGT 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 2 cut(s) 30, 285
PkrI GCNGC 5 cut(s) 271, 369, 610, 613, 700
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PscI ACATGT 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 162, 171
PspPI GGNCC 1 cut(s) 161
PstI CTGCAG 2 cut(s) 27, 411
PstNI CAGNNNCTG 2 cut(s) 367, 599
PsuI RGATCY 1 cut(s) 596
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 223, 416
RsaNI GTAC 2 cut(s) 222, 415
SaqAI TTAA 1 cut(s) 727
SatI GCNGC 5 cut(s) 270, 368, 609, 612, 699
Sau3AI GATC 1 cut(s) 596
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 172
SfaNI GCATC 1 cut(s) 441
SfcI CTRYAG 2 cut(s) 23, 407
SinI GGWCC 1 cut(s) 161
Sse9I AATT 4 cut(s) 81, 300, 418, 579
SseBI AGGCCT 1 cut(s) 558
SsiI CCGC 3 cut(s) 269, 305, 611
StuI AGGCCT 1 cut(s) 558
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 3 cut(s) 35, 256, 384
TaaI ACNGT 3 cut(s) 230, 436, 648
TasI AATT 4 cut(s) 81, 300, 418, 579
TauI GCSGC 2 cut(s) 272, 614
TfiI GAWTC 2 cut(s) 30, 285
Tru1I TTAA 1 cut(s) 727
Tru9I TTAA 1 cut(s) 727
TscAI CASTG 2 cut(s) 416, 441
TseI GCWGC 3 cut(s) 367, 608, 698
TspDTI ATGAA 3 cut(s) 17, 226, 562
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 2 cut(s) 416, 441
VpaK11BI GGWCC 1 cut(s) 161
XceI RCATGY 2 cut(s) 255, 400
XmnI GAANNNNTTC 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.