Rh1AG411600
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004000
Physical Location & Seq
Forward (+)
64467809 .. 64468933
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG411600.1

Sequence Viewer

Length: 357 bp
ATGAACCACTTGAAAGCATTTCTGCAGAGAATCCCTTGGCTGAAGGTCTGGGCTTTTCAGCTGTGTGCATTGCCCATGATAATTGGTGCTTTTATGAGTGCAACAGCCAGAACTCTTGCTGGTATGCTTATAGGAAGGTTATTTGTTGGGACTGGTATGGGTCCGGGGGCTCCAGTTGCTTCTCTTTATATAACAGAGGTTTCTTCTTCTTTTGTGAGGGGTACTTACGGTAGTTTCATCCAGATTGCAACATGCCTTGGACTTACGGCGGCTTTTATTGTTGGAATCCCTGAGAAAGAAATTGCGGGCTGGTGGCGTGTTGTTTTTGGGTTTCTACAATTCCAGTTGCAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

118

Amino Acids

12.89

Weight (kDa)

9.59

Isoelectric Point (pI)

26.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 18 - 111 5e-10 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 269, 305
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 1 cut(s) 223
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 282
BcnI CCSGG 1 cut(s) 165
BfaI CTAG 1 cut(s) 355
BfmI CTRYAG 1 cut(s) 23
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 162, 171
BmrFI CCNGG 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 35, 164, 256
Bse1I ACTGG 3 cut(s) 157, 173, 343
Bse3DI GCAATG 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 35, 164, 256
BseGI GGATG 1 cut(s) 237
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 3 cut(s) 157, 173, 343
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 172
BspACI CCGC 2 cut(s) 269, 305
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 162, 171
BspMAI CTGCAG 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 3 cut(s) 157, 173, 343
BssECI CCNNGG 3 cut(s) 35, 164, 256
BssT1I CCWWGG 2 cut(s) 35, 256
Bst4CI ACNGT 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 23
BtsCI GGATG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 222
CviAII CATG 2 cut(s) 76, 252
CviJI RGCY 7 cut(s) 40, 53, 61, 107, 170, 272, 309
CviKI_1 RGCY 7 cut(s) 40, 53, 61, 107, 170, 272, 309
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 291
Eco130I CCWWGG 2 cut(s) 35, 256
Eco24I GRGCYC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 62
EcoT14I CCWWGG 2 cut(s) 35, 256
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 2 cut(s) 35, 256
FaeI CATG 2 cut(s) 79, 255
FaiI YATR 8 cut(s) 77, 95, 125, 131, 158, 189, 191, 253
FaqI GGGAC 1 cut(s) 163
FatI CATG 2 cut(s) 75, 251
FauI CCCGC 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 1 cut(s) 355
GluI GCNGC 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 156
HapII CCGG 1 cut(s) 164
Hin1II CATG 2 cut(s) 79, 255
HinfI GANTC 2 cut(s) 30, 285
HpaII CCGG 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 241
HpyAV CCTTC 2 cut(s) 37, 129
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 5 cut(s) 25, 68, 101, 248, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 2 cut(s) 79, 255
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 9 cut(s) 34, 105, 121, 138, 177, 186, 254, 295, 303
MaeI CTAG 1 cut(s) 355
MboII GAAGA 2 cut(s) 195, 198
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 3 cut(s) 81, 300, 338
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 2 cut(s) 190, 210
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 1 cut(s) 165
NlaIII CATG 2 cut(s) 79, 255
NlaIV GGNNCC 2 cut(s) 162, 171
NspI RCATGY 1 cut(s) 255
PfeI GAWTC 2 cut(s) 30, 285
PkrI GCNGC 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 162, 171
PspPI GGNCC 1 cut(s) 161
PstI CTGCAG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SatI GCNGC 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 172
SetI ASST 4 cut(s) 48, 63, 140, 201
SfcI CTRYAG 1 cut(s) 23
SinI GGWCC 1 cut(s) 161
Sse9I AATT 3 cut(s) 81, 300, 338
SsiI CCGC 2 cut(s) 269, 305
SspMI CTAG 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 2 cut(s) 35, 256
TaaI ACNGT 1 cut(s) 230
TasI AATT 3 cut(s) 81, 300, 338
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 2 cut(s) 30, 285
TspDTI ATGAA 2 cut(s) 17, 226
VpaK11BI GGWCC 1 cut(s) 161
XceI RCATGY 1 cut(s) 255
XspI CTAG 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.