FvH4_1g05640

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008537
Physical Location & Seq
Forward (+)
2983094 .. 2985342
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05640.t1

Sequence Viewer

Length: 636 bp
ATGAAACTAAAGCAGCTCGAAAGCCTTCTTGGTGCTCTCCAACAGTTCTCAAACCCAAAGGTGGAGCTGGAACAATACCCAACTGGAGCCCACATTGCATCTCGCATGCTCTACACTGCAGAGAATTCATTTGAGGATGTGTGTGACAAGGTTGTGGCTGATTTTGGTTGTGGTTGTGGTACATTGGGGGTAGCAGCTGGACTCTTGGGTGCAGAACATGTGATTGGCATTGACGTCGATCCAGAATCTCTTGAAGTAGCATCACTAAATGCTGAGGAACTTGAGTTGGATATAGAGTATATTCAAGGCAACATCAAGAACTTAGGATGGAGAGCTGAAGTTGTTGATACTGTTGTAATGAATCCTCCATTTGGAACTCGGCAAAAGGGTGCTGACATGGATTTTCTCTCTGTGGCTTTGAAGGTTGCTTCTCAAGCTGTTTATTCGTTACATAAAACCTCCACAAGAGATCATGTGAAAAGGGCAGCCTTGCGGCAGTTCAATGCTAGTAGTGCTGAGGTTATATGTGAGCTTCGATATGATTTACCACAAACATACAAGTTTCATAAGAAACGAGAGGTGGATATTGCTGTGGACTTGTGGCGATTTGTTCCCAAGAGTAGGCAGGGTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MTS PrmA

Protein Analysis

212

Amino Acids

23.35

Weight (kDa)

5.42

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 28 - 121 8.9e-12 Ribosomal protein L11 methyltransferase (PrmA)
MTS PF05175 45 - 129 1e-12 Methyltransferase small domain
UPF0020 PF01170 49 - 130 1.4e-07 RMKL-like, methyltransferase domain
Methyltransf_31 PF13847 50 - 124 7.1e-10 Methyltransferase domain
Methyltransf_25 PF13649 52 - 121 1.3e-10 Methyltransferase domain
Methyltransf_11 PF08241 54 - 121 4.5e-08 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 237
AciI CCGC 1 cut(s) 493
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 3 cut(s) 61, 371, 621
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 4 cut(s) 254, 305, 421, 502
AjuI GAANNNNNNNTTGG 4 cut(s) 12, 44, 207, 239
AluBI AGCT 6 cut(s) 16, 67, 197, 335, 437, 532
AluI AGCT 6 cut(s) 16, 67, 197, 335, 437, 532
Alw21I GWGCWC 1 cut(s) 37
AlwI GGATC 1 cut(s) 233
ApeKI GCWGC 3 cut(s) 13, 194, 485
ApoI RAATTY 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 24
BaeI ACNNNNGTAYC 2 cut(s) 339, 372
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 37
BbvCI CCTCAGC 2 cut(s) 273, 516
BbvI GCAGC 3 cut(s) 25, 206, 497
BccI CCATC 1 cut(s) 321
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 4 cut(s) 14, 195, 486, 494
BlsI GCNGC 4 cut(s) 15, 196, 487, 495
BmiI GGNNCC 1 cut(s) 88
BmsI GCATC 2 cut(s) 107, 269
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 2 cut(s) 273, 516
BpuEI CTTGAG 2 cut(s) 302, 417
BsaHI GRCGYC 1 cut(s) 234
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 371, 621
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 2 cut(s) 142, 332
BseLI CCNNNNNNNGG 3 cut(s) 61, 371, 621
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 264, 507
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 3 cut(s) 25, 206, 497
BsgI GTGCAG 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 37
BslI CCNNNNNNNGG 3 cut(s) 61, 371, 621
Bsp1286I GDGCHC 2 cut(s) 37, 91
Bsp143I GATC 2 cut(s) 238, 469
BspACI CCGC 1 cut(s) 493
BspCNI CTCAG 2 cut(s) 265, 508
BspLI GGNNCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 88
BssMI GATC 2 cut(s) 238, 469
BssNI GRCGYC 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 45, 352
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 273, 322, 516
BstF5I GGATG 2 cut(s) 142, 332
BstKTI GATC 2 cut(s) 241, 472
BstMBI GATC 2 cut(s) 238, 469
BstMWI GCNNNNNNNGC 3 cut(s) 95, 434, 512
BstNSI RCATGY 2 cut(s) 109, 221
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 25, 206, 497
BtsCI GGATG 2 cut(s) 142, 332
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 180
CviAII CATG 4 cut(s) 106, 218, 397, 473
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 3 cut(s) 273, 322, 516
DpnI GATC 2 cut(s) 240, 471
DpnII GATC 2 cut(s) 238, 469
Eco24I GRGCYC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 4 cut(s) 109, 221, 400, 476
FatI CATG 4 cut(s) 105, 217, 396, 472
Fnu4HI GCNGC 4 cut(s) 14, 195, 486, 494
FokI GGATG 2 cut(s) 149, 339
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 4 cut(s) 14, 195, 486, 494
FspBI CTAG 1 cut(s) 507
GluI GCNGC 4 cut(s) 14, 195, 486, 494
GsuI CTGGAG 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 4 cut(s) 109, 221, 400, 476
HinfI GANTC 3 cut(s) 201, 245, 361
Hpy166II GTNNAC 1 cut(s) 595
Hpy188III TCNNGA 3 cut(s) 242, 251, 316
Hpy8I GTNNAC 1 cut(s) 595
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 2 cut(s) 35, 415
HpyCH4III ACNGT 2 cut(s) 45, 352
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 98, 119, 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 434, 512
HpyF3I CTNAG 3 cut(s) 273, 322, 516
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 4 cut(s) 109, 221, 400, 476
Kzo9I GATC 2 cut(s) 238, 469
LmnI GCTCC 2 cut(s) 64, 86
LpnPI CCDG 5 cut(s) 53, 69, 183, 255, 611
Lsp1109I GCAGC 3 cut(s) 25, 206, 497
LweI GCATC 2 cut(s) 107, 269
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 143, 447
MalI GATC 2 cut(s) 240, 471
MboI GATC 2 cut(s) 238, 469
MhlI GDGCHC 2 cut(s) 37, 91
MluCI AATT 1 cut(s) 124
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 2 cut(s) 64, 267
MnlI CCTC 6 cut(s) 127, 268, 375, 469, 511, 571
MroXI GAANNNNTTC 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 197
MwoI GCNNNNNNNGC 3 cut(s) 95, 434, 512
NdeII GATC 2 cut(s) 238, 469
NlaIII CATG 4 cut(s) 109, 221, 400, 476
NlaIV GGNNCC 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 2 cut(s) 109, 221
PaeI GCATGC 1 cut(s) 109
PciI ACATGT 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 245, 361
PkrI GCNGC 4 cut(s) 15, 196, 487, 495
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PscI ACATGT 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 88
PsrI GAACNNNNNNTAC 1 cut(s) 613
PstI CTGCAG 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SatI GCNGC 4 cut(s) 14, 195, 486, 494
Sau3AI GATC 2 cut(s) 238, 469
SchI GAGTC 1 cut(s) 195
SduI GDGCHC 2 cut(s) 37, 91
SfaNI GCATC 2 cut(s) 107, 269
SfcI CTRYAG 1 cut(s) 117
SmlI CTYRAG 2 cut(s) 281, 432
SmoI CTYRAG 2 cut(s) 281, 432
SphI GCATGC 1 cut(s) 109
Sse9I AATT 1 cut(s) 124
SsiI CCGC 1 cut(s) 493
SspMI CTAG 1 cut(s) 507
TaaI ACNGT 2 cut(s) 45, 352
TaiI ACGT 1 cut(s) 237
TaqI TCGA 3 cut(s) 18, 237, 535
TasI AATT 1 cut(s) 124
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 2 cut(s) 245, 361
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 3 cut(s) 13, 194, 485
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 4 cut(s) 17, 117, 374, 554
TspRI CASTG 1 cut(s) 121
XapI RAATTY 1 cut(s) 124
XceI RCATGY 2 cut(s) 109, 221
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 507
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.