Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008537

Physical Location & Seq

Genomic Coordinates Forward (+)

3025676 .. 3027623

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04650.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAGCTGAAGCAGTTGGAAGGCCACCTTGGCGGTCTCCAACAGTTCTCCAATCCAAAGGTGGAGCTGGAGCAATACCCAACTGGACCCCACATTGCTTCTCGCATGCTCTTCACTGCGGAGAATTCATTCGGAGACGTGAGTGGGAAGGTAGTGGCTGATTTCGGTTGCGGTTGCGGCACATTGGGTGTTGCAGCTGCACTCTTGGGCGCGGAACAGGTGATTGGCATTGACATCGATGCTCAGTCGCTTGAAATAGCTGTGGAAAATGCCGAGGATCTTGAGTTGGACATGGATTTTATTCAGTGCAACATTAAGAACTTAGGATGGAGAGGTAGCGTTGTTGATACTGTCGTAATGAATCCTCCATTTGGAACTCGGATTAAGGGTGCTGACATGGATTTCCTCTCAGTAGCCTTGAAGATTGCTTCTCAAGCAGTTTATTCCTTGCACAAGACTTCCACAAGAGATCATGTGAAAAGGGCAGCCTTGCAGAACTTCAATGCGAGCAGTGCTGAAGTTATATGTGAGCTTCGATACGATGTACCACAGCTGTACAAATTTCACAAGAAAAGGGAGGTGGATATTGCCGTGGACTTGTGGCGATTCGTTCCCAAGAGTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS PrmA

Protein Analysis

209

Amino Acids

22.83

Weight (kDa)

5.54

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28830 AT4G28830 AT4G28830 AT4G28830
fragaria_vesca	FvH4_1g05640 FvH4_1g05640
malus_domestica	MD02G1057400.v1.1
prunus_persica	Prupe.7G225500_v2.0.a1 Prupe.7G225500_v2.0.a1 Prupe.7G225500_v2.0.a1
pyrus_communis	pycom02g04650
rosa_chinensis	RchiOBHm_Chr2g0091271
rosa_laevigata	RLG00000016200
rosa_multiflora	Rmu_co8413877.1_g000001 Rmu_sc0002270.1_g000030
rosa_roxburghii	Rroxscaffold_2G00150300
rosa_rugosa	Rorug02G0015400 Rorug02G0015500
rosa_samantha	Rh2AG060900 Rh2BG059900 Rh2CG061900 Rh2DG060400
rosa_wichuraiana	Rw2G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	212
AciI	CCGC	5 cut(s)	33, 119, 171, 177, 212
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	124, 560
AcuI	CTGAAG	2 cut(s)	29, 537
AfaI	GTAC	2 cut(s)	546, 557
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	254, 421, 502
AjiI	CACGTC	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	4 cut(s)	12, 44, 207, 239
AluBI	AGCT	6 cut(s)	7, 67, 197, 260, 532, 553
AluI	AGCT	6 cut(s)	7, 67, 197, 260, 532, 553
Alw26I	GTCTC	2 cut(s)	41, 129
AlwI	GGATC	1 cut(s)	285
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	3 cut(s)	194, 197, 485
ApoI	RAATTY	2 cut(s)	124, 560
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
BbvI	GCAGC	3 cut(s)	184, 206, 497
BccI	CCATC	1 cut(s)	321
BceAI	ACGGC	1 cut(s)	575
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BcoDI	GTCTC	2 cut(s)	41, 129
BfaI	CTAG	1 cut(s)	625
BglI	GCCNNNNNGGC	1 cut(s)	30
BisI	GCNGC	4 cut(s)	178, 195, 198, 486
BlsI	GCNGC	4 cut(s)	179, 196, 199, 487
Bme18I	GGWCC	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	302, 417
Bsa29I	ATCGAT	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	28, 273, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	93
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	3 cut(s)	28, 273, 591
BseGI	GGATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	257, 423
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	3 cut(s)	184, 206, 497
BsgI	GTGCAG	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	24
BshVI	ATCGAT	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	2 cut(s)	41, 129
BsmBI	CGTCTC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	2 cut(s)	277, 469
BspACI	CCGC	5 cut(s)	33, 119, 171, 177, 212
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	256, 422
BspDI	ATCGAT	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	93
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	28, 273, 591
BssMI	GATC	2 cut(s)	277, 469
BssT1I	CCWWGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	45, 352
Bst6I	CTCTTC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	107, 508
BstDEI	CTNAG	3 cut(s)	243, 322, 409
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	1 cut(s)	332
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	280, 472
BstMAI	GTCTC	2 cut(s)	41, 129
BstMBI	GATC	2 cut(s)	277, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 177, 434, 512
BstNSI	RCATGY	1 cut(s)	109
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	184, 206, 497
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	24
BsuTUI	ATCGAT	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	591
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	332
BtsI	GCAGTG	2 cut(s)	114, 517
BtsIMutI	CAGTG	3 cut(s)	114, 311, 517
Cac8I	GCNNGC	2 cut(s)	107, 508
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	545, 556
CviAII	CATG	4 cut(s)	106, 292, 397, 473
CviQI	GTAC	2 cut(s)	545, 556
DdeI	CTNAG	3 cut(s)	243, 322, 409
DpnI	GATC	2 cut(s)	279, 471
DpnII	GATC	2 cut(s)	277, 469
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	28
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	2 cut(s)	29, 537
EcoRI	GAATTC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	4 cut(s)	109, 295, 400, 476
FaiI	YATR	6 cut(s)	107, 293, 398, 474, 524, 526
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	4 cut(s)	105, 291, 396, 472
Fnu4HI	GCNGC	4 cut(s)	178, 195, 198, 486
FokI	GGATG	1 cut(s)	339
Fsp4HI	GCNGC	4 cut(s)	178, 195, 198, 486
FspBI	CTAG	1 cut(s)	625
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	4 cut(s)	178, 195, 198, 486
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	109, 295, 400, 476
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	2 cut(s)	361, 606
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	2 cut(s)	134, 381
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	595
HpyAV	CCTTC	2 cut(s)	14, 142
HpyCH4III	ACNGT	2 cut(s)	45, 352
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	5 cut(s)	194, 200, 309, 451, 493
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 177, 434, 512
HpyF3I	CTNAG	3 cut(s)	243, 322, 409
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	109, 295, 400, 476
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	277, 469
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	64, 70
LpnPI	CCDG	3 cut(s)	53, 69, 203
Lsp1109I	GCAGC	3 cut(s)	184, 206, 497
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	625
MaeII	ACGT	1 cut(s)	138
MalI	GATC	2 cut(s)	279, 471
MboI	GATC	2 cut(s)	277, 469
MboII	GAAGA	2 cut(s)	103, 433
MflI	RGATCY	1 cut(s)	277
MluCI	AATT	2 cut(s)	124, 560
MmeI	TCCRAC	2 cut(s)	64, 267
MnlI	CCTC	5 cut(s)	268, 326, 375, 416, 571
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	2 cut(s)	315, 384
MspA1I	CMGCKG	2 cut(s)	197, 553
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	4 cut(s)	30, 177, 434, 512
NdeII	GATC	2 cut(s)	277, 469
NlaIII	CATG	4 cut(s)	109, 295, 400, 476
NlaIV	GGNNCC	1 cut(s)	88
NmeAIII	GCCGAG	1 cut(s)	298
NspI	RCATGY	1 cut(s)	109
PaeI	GCATGC	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	361, 606
PkrI	GCNGC	4 cut(s)	179, 196, 199, 487
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	277
PvuII	CAGCTG	2 cut(s)	197, 553
RsaI	GTAC	2 cut(s)	546, 557
RsaNI	GTAC	2 cut(s)	545, 556
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	315, 384
SatI	GCNGC	4 cut(s)	178, 195, 198, 486
Sau3AI	GATC	2 cut(s)	277, 469
Sau96I	GGNCC	1 cut(s)	86
SfaNI	GCATC	1 cut(s)	229
SinI	GGWCC	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	281, 432
SmoI	CTYRAG	2 cut(s)	281, 432
SphI	GCATGC	1 cut(s)	109
Sse9I	AATT	2 cut(s)	124, 560
SsiI	CCGC	5 cut(s)	33, 119, 171, 177, 212
SspMI	CTAG	1 cut(s)	625
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	45, 352
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	237, 535
TasI	AATT	2 cut(s)	124, 560
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	361, 606
Tru1I	TTAA	2 cut(s)	315, 384
Tru9I	TTAA	2 cut(s)	315, 384
TscAI	CASTG	3 cut(s)	121, 311, 517
TseI	GCWGC	3 cut(s)	194, 197, 485
TspDTI	ATGAA	3 cut(s)	17, 117, 374
TspRI	CASTG	3 cut(s)	121, 311, 517
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	2 cut(s)	124, 560
XceI	RCATGY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.