Rh2CG061900

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008537
Physical Location & Seq
Forward (+)
5062542 .. 5063990
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG061900.1

Sequence Viewer

Length: 477 bp
ATGCTTGTTCATTCCAGTAGTTGGTTCAATACTTGCTTACGTTCACTGTTTCACAGACATGTGATTGGCATTGACGTCGATCCAGAATCTCTTGAATTAGCTTCACTAAATGCTGAGGAACTTGAGTTGGACATAGATTATGTTCAATGCAACATCAAGAACTTAGGGTGGAGAGTTGTTGATACTATTGTAATGAATCCTCCATTTGGAACTCGGAAAAAGGGTGCTGACATGGATTTTCTCTCTGTGGCTTTGAAGGTTGCTTCTCAAGCTGTTTATTCCTTACATAAAACCTCCACGAGAGATCATGTGAAAAGGGCAGCCTTGCAGCAGTTCAATGCTAGCAGTGCTGAGGTTATATGTGAGCTTCGATATGATTTACCACAAACGTACAAGTTTCATAAGAAACGAGAGGTGGATATCGCTGTGGACTTGTGGCGATTTGTCCCCAAGAGTAAGCAGGGTCCAGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MTS PrmA

Protein Analysis

158

Amino Acids

18.07

Weight (kDa)

7.01

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0020 PF01170 20 - 74 3.8e-06 RMKL-like, methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 21
AclWI GGATC 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 21, 206
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 5 cut(s) 28, 95, 146, 256, 337
AluBI AGCT 3 cut(s) 101, 272, 367
AluI AGCT 3 cut(s) 101, 272, 367
AlwI GGATC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 320, 328
AspS9I GGNCC 1 cut(s) 464
AsuNHI GCTAGC 1 cut(s) 341
AvaII GGWCC 1 cut(s) 464
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BauI CACGAG 1 cut(s) 298
BbvCI CCTCAGC 2 cut(s) 114, 351
BbvI GCAGC 2 cut(s) 332, 340
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BfaI CTAG 2 cut(s) 342, 475
BglII AGATCT 1 cut(s) 471
BisI GCNGC 2 cut(s) 321, 329
BlsI GCNGC 2 cut(s) 322, 330
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 465
BmtI GCTAGC 1 cut(s) 345
Bpu10I CCTNAGC 2 cut(s) 114, 351
BpuEI CTTGAG 2 cut(s) 143, 252
BsaHI GRCGYC 1 cut(s) 75
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 206
Bse1I ACTGG 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 21, 206
BseMII CTCAG 2 cut(s) 105, 342
BseNI ACTGG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 332, 340
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 2 cut(s) 21, 206
BsmFI GGGAC 1 cut(s) 431
Bsp143I GATC 3 cut(s) 79, 304, 471
BspCNI CTCAG 2 cut(s) 106, 343
BspLI GGNNCC 1 cut(s) 465
BspOI GCTAGC 1 cut(s) 345
BspPI GGATC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 15
BssMI GATC 3 cut(s) 79, 304, 471
BssNI GRCGYC 1 cut(s) 75
BssSI CACGAG 1 cut(s) 298
Bst2BI CACGAG 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 3 cut(s) 114, 163, 351
BstKTI GATC 3 cut(s) 82, 307, 474
BstMBI GATC 3 cut(s) 79, 304, 471
BstMWI GCNNNNNNNGC 2 cut(s) 269, 347
BstNSI RCATGY 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 332, 340
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 44, 352
Cac8I GCNNGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 464
Csp6I GTAC 1 cut(s) 391
CviAII CATG 3 cut(s) 59, 232, 308
CviJI RGCY 5 cut(s) 101, 251, 272, 323, 367
CviKI_1 RGCY 5 cut(s) 101, 251, 272, 323, 367
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 3 cut(s) 114, 163, 351
DpnI GATC 3 cut(s) 81, 306, 473
DpnII GATC 3 cut(s) 79, 304, 471
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 464
EcoRV GATATC 1 cut(s) 421
FaeI CATG 3 cut(s) 62, 235, 311
FaqI GGGAC 1 cut(s) 431
FatI CATG 3 cut(s) 58, 231, 307
Fnu4HI GCNGC 2 cut(s) 321, 329
Fsp4HI GCNGC 2 cut(s) 321, 329
FspBI CTAG 2 cut(s) 342, 475
GluI GCNGC 2 cut(s) 321, 329
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 3 cut(s) 62, 235, 311
HinfI GANTC 2 cut(s) 86, 196
Hpy166II GTNNAC 2 cut(s) 44, 430
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 4 cut(s) 83, 92, 157, 467
Hpy8I GTNNAC 2 cut(s) 44, 430
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4IV ACGT 3 cut(s) 40, 75, 389
HpyCH4V TGCA 2 cut(s) 150, 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 347
HpyF3I CTNAG 3 cut(s) 114, 163, 351
HpySE526I ACGT 3 cut(s) 40, 75, 389
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 3 cut(s) 62, 235, 311
Kzo9I GATC 3 cut(s) 79, 304, 471
LpnPI CCDG 3 cut(s) 28, 96, 446
Lsp1109I GCAGC 2 cut(s) 332, 340
MaeI CTAG 2 cut(s) 342, 475
MaeII ACGT 3 cut(s) 40, 75, 389
MalI GATC 3 cut(s) 81, 306, 473
MboI GATC 3 cut(s) 79, 304, 471
MflI RGATCY 1 cut(s) 471
MluCI AATT 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 5 cut(s) 109, 210, 304, 346, 406
MslI CAYNNNNRTG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 269, 347
NdeII GATC 3 cut(s) 79, 304, 471
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 3 cut(s) 62, 235, 311
NlaIV GGNNCC 1 cut(s) 465
NspI RCATGY 1 cut(s) 62
PciI ACATGT 1 cut(s) 58
PfeI GAWTC 2 cut(s) 86, 196
PflMI CCANNNNNTGG 1 cut(s) 21
PkrI GCNGC 2 cut(s) 322, 330
PscI ACATGT 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 1 cut(s) 464
PsuI RGATCY 1 cut(s) 471
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 1 cut(s) 57
SatI GCNGC 2 cut(s) 321, 329
Sau3AI GATC 3 cut(s) 79, 304, 471
Sau96I GGNCC 1 cut(s) 464
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 122, 267
SmoI CTYRAG 2 cut(s) 122, 267
Sse9I AATT 1 cut(s) 95
SspMI CTAG 2 cut(s) 342, 475
TaaI ACNGT 1 cut(s) 48
TaiI ACGT 3 cut(s) 43, 78, 392
TaqI TCGA 2 cut(s) 78, 370
TasI AATT 1 cut(s) 95
TfiI GAWTC 2 cut(s) 86, 196
TscAI CASTG 2 cut(s) 51, 352
TseI GCWGC 2 cut(s) 320, 328
TspDTI ATGAA 2 cut(s) 209, 389
TspRI CASTG 2 cut(s) 51, 352
Van91I CCANNNNNTGG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 464
XceI RCATGY 1 cut(s) 62
XspI CTAG 2 cut(s) 342, 475
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.