Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008537

Physical Location & Seq

Genomic Coordinates Reverse (-)

19996083 .. 19999225

Gene Structure 3143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G225500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAGCTGAAGCAGTTAGAAGGCCTCCTTGGTGGCCTCCAACAGTTCTCCAACCCAAAGGCGGAGCTGGAACAATACCCAACTGGACCCCACATTGCTTCTCGCATGCTCTACACTGCGGAGAACTCATTCGGGGATGTGACTGACAAGGTAGTGGCTGATTTTGGGTGTGGTTGTGGTACATTGGGTGTTGCAGCTGCACTCTTGGATGCAGAACGTGTGATTGGCATTGACATTGATTCTCAATCTCTTGAATTAGCATCACTAAATGCAGAGGAGCTTGAGGCATATGCTTTCAAATTCTATCTTCACCTAATGGTCTTGATCCCAAATTCAGCTGAAGTTGTTGATACTGTTGTAATGAATCCTCCATTTGGAACTCGGAAAAAAGGTGCTGACATGGATTTTCTCTCTGTGGCTTTGAAGATTGCTTCTCAAGCAGTTTATTCCTTGCACAAGACTTCCACGAGAGATCATGTGAAAAGGGCAGCCTTGCAGCACTTCAATGCCAGCAGTGCTGAAGTTATATGTGAGCTTCGATATGATGTACCACAACTGTACAAATTTCACAAGAAAAGGGAGGTAGATATTGCTGTAGACTTGTGGCGATTTGTTCCCAAGAGTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS PrmA

Protein Analysis

210

Amino Acids

23.11

Weight (kDa)

5.87

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28830 AT4G28830 AT4G28830 AT4G28830
fragaria_vesca	FvH4_1g05640 FvH4_1g05640
malus_domestica	MD02G1057400.v1.1
prunus_persica	Prupe.7G225500_v2.0.a1 Prupe.7G225500_v2.0.a1 Prupe.7G225500_v2.0.a1
pyrus_communis	pycom02g04650
rosa_chinensis	RchiOBHm_Chr2g0091271
rosa_laevigata	RLG00000016200
rosa_multiflora	Rmu_co8413877.1_g000001 Rmu_sc0002270.1_g000030
rosa_roxburghii	Rroxscaffold_2G00150300
rosa_rugosa	Rorug02G0015400 Rorug02G0015500
rosa_samantha	Rh2AG060900 Rh2BG059900 Rh2CG061900 Rh2DG060400
rosa_wichuraiana	Rw2G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	597
AciI	CCGC	2 cut(s)	62, 119
AclWI	GGATC	1 cut(s)	319
AcsI	RAATTY	3 cut(s)	299, 331, 563
AcuI	CTGAAG	3 cut(s)	29, 360, 540
AfaI	GTAC	3 cut(s)	181, 549, 560
AfiI	CCNNNNNNNGG	2 cut(s)	61, 374
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	4 cut(s)	254, 298, 424, 505
AjuI	GAANNNNNNNTTGG	4 cut(s)	12, 44, 207, 239
AluBI	AGCT	6 cut(s)	7, 67, 197, 280, 338, 535
AluI	AGCT	6 cut(s)	7, 67, 197, 280, 338, 535
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	2 cut(s)	22, 34
ApeKI	GCWGC	4 cut(s)	194, 197, 488, 496
ApoI	RAATTY	3 cut(s)	299, 331, 563
Asp700I	GAANNNNTTC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	342, 375
BauI	CACGAG	1 cut(s)	466
BbvI	GCAGC	4 cut(s)	184, 206, 500, 508
BfaI	CTAG	1 cut(s)	628
BfmI	CTRYAG	1 cut(s)	594
BisI	GCNGC	4 cut(s)	195, 198, 489, 497
BlsI	GCNGC	4 cut(s)	196, 199, 490, 498
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	2 cut(s)	199, 269
BpuEI	CTTGAG	2 cut(s)	302, 420
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 374
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	142, 214
BseLI	CCNNNNNNNGG	2 cut(s)	61, 374
BseMI	GCAATG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	4 cut(s)	184, 206, 500, 508
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	24, 36
BslI	CCNNNNNNNGG	2 cut(s)	61, 374
BsnI	GGCC	2 cut(s)	24, 36
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	324, 472
BspACI	CCGC	2 cut(s)	62, 119
BspANI	GGCC	2 cut(s)	24, 36
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	93
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	324, 472
BssSI	CACGAG	1 cut(s)	466
BssT1I	CCWWGG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	466
Bst4CI	ACNGT	3 cut(s)	45, 355, 558
BstAUI	TGTACA	1 cut(s)	558
BstC8I	GCNNGC	2 cut(s)	107, 511
BstF5I	GGATG	2 cut(s)	142, 214
BstKTI	GATC	2 cut(s)	327, 475
BstMBI	GATC	2 cut(s)	324, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 515
BstNSI	RCATGY	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	4 cut(s)	184, 206, 500, 508
BsuRI	GGCC	2 cut(s)	24, 36
BtsCI	GGATG	2 cut(s)	142, 214
BtsI	GCAGTG	2 cut(s)	114, 520
BtsIMutI	CAGTG	2 cut(s)	114, 520
Cac8I	GCNNGC	2 cut(s)	107, 511
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	3 cut(s)	180, 548, 559
CviAII	CATG	3 cut(s)	106, 400, 476
CviQI	GTAC	3 cut(s)	180, 548, 559
DpnI	GATC	2 cut(s)	326, 474
DpnII	GATC	2 cut(s)	324, 472
EciI	GGCGGA	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	28
Eco147I	AGGCCT	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	3 cut(s)	29, 360, 540
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	3 cut(s)	109, 403, 479
FaiI	YATR	8 cut(s)	107, 289, 291, 401, 477, 527, 529, 543
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	3 cut(s)	105, 399, 475
FauNDI	CATATG	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	4 cut(s)	195, 198, 489, 497
FokI	GGATG	2 cut(s)	149, 221
Fsp4HI	GCNGC	4 cut(s)	195, 198, 489, 497
FspBI	CTAG	1 cut(s)	628
GluI	GCNGC	4 cut(s)	195, 198, 489, 497
HaeIII	GGCC	2 cut(s)	24, 36
Hin1II	CATG	3 cut(s)	109, 403, 479
HinfI	GANTC	2 cut(s)	239, 364
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	1 cut(s)	384
Hpy188III	TCNNGA	2 cut(s)	251, 322
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	3 cut(s)	45, 355, 558
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	6 cut(s)	194, 200, 212, 272, 454, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 515
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	3 cut(s)	109, 403, 479
Kzo9I	GATC	2 cut(s)	324, 472
LmnI	GCTCC	2 cut(s)	64, 277
LpnPI	CCDG	3 cut(s)	53, 69, 523
Lsp1109I	GCAGC	4 cut(s)	184, 206, 500, 508
LweI	GCATC	2 cut(s)	199, 269
MaeI	CTAG	1 cut(s)	628
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	326, 474
MboI	GATC	2 cut(s)	324, 472
MboII	GAAGA	2 cut(s)	299, 436
MluCI	AATT	4 cut(s)	254, 299, 331, 563
MmeI	TCCRAC	2 cut(s)	64, 75
MnlI	CCTC	6 cut(s)	35, 47, 268, 277, 378, 574
MroXI	GAANNNNTTC	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	2 cut(s)	197, 338
MwoI	GCNNNNNNNGC	2 cut(s)	437, 515
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	324, 472
NlaIII	CATG	3 cut(s)	109, 403, 479
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	109
PaeI	GCATGC	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	239, 364
PkrI	GCNGC	4 cut(s)	196, 199, 490, 498
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	86
PvuII	CAGCTG	2 cut(s)	197, 338
RsaI	GTAC	3 cut(s)	181, 549, 560
RsaNI	GTAC	3 cut(s)	180, 548, 559
RseI	CAYNNNNRTG	1 cut(s)	504
SatI	GCNGC	4 cut(s)	195, 198, 489, 497
Sau3AI	GATC	2 cut(s)	324, 472
Sau96I	GGNCC	1 cut(s)	86
SfaNI	GCATC	2 cut(s)	199, 269
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	2 cut(s)	281, 435
SmoI	CTYRAG	2 cut(s)	281, 435
SphI	GCATGC	1 cut(s)	109
Sse9I	AATT	4 cut(s)	254, 299, 331, 563
SseBI	AGGCCT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	62, 119
SspMI	CTAG	1 cut(s)	628
StuI	AGGCCT	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	3 cut(s)	45, 355, 558
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	538
TasI	AATT	4 cut(s)	254, 299, 331, 563
TatI	WGTACW	1 cut(s)	558
TfiI	GAWTC	2 cut(s)	239, 364
TscAI	CASTG	2 cut(s)	121, 520
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	4 cut(s)	194, 197, 488, 496
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	17, 377
TspRI	CASTG	2 cut(s)	121, 520
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	3 cut(s)	299, 331, 563
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.