Rw2G004890

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008537
Physical Location & Seq
Reverse (-)
4599528 .. 4601459
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G004890.1

Sequence Viewer

Length: 753 bp
ATGAAGCTCAAGCAGCTCGAAAGCCTCCTTGGTGGTCTCCAACAGTTCTCCAACCCAAAGGTGGAGCTGGAACAATACCCAACTGGACCCCACATTGCATCTCGCATGCTCTACACTGCAGAGAATTCATTTGGGGATGTGTGTGACAAGGTAGTGGCTGATTTTGGCTGTGGTTGTGGTACATTGGGGGTTGCAGCTGGACTCTTGGGCGCAGAACATGTGATTGGCATTGACGTCGATCCAGAATCTCTTGAATTAGCTTCACTAAATGCTGAGGAACTTGAGGTACTATTACTTTCTTTATTTCTGTGGTGGTTTATACTTTACAGCTCTTTATGCCTTAATATGCTTCTAAAATGGATTATATATACTTTACAAACTATATGGTTCTGGGTTTTGTCTGTGTATTATATTCAATGCAACATCAAGAACTTAGGGTGGAGAGCTGAAGTTGTTGATACTATTGTAATGAATCCTCCATTTGGAACTCGGAAAAAGGGTGCTGACATGGATTTTCTCTCTGTGGCTTTGAAGGTTGCTTCTCAAGCTGTTTATTCCTTACATAAAACCTCCACGAGAGATCATGTGAAAAGGGCAGCCTTGCAGCAATTCAATGCTAGCAGTGCTGAGGTTATATGTGAGCTTCGATATGATTTACCACAAACGTACAAGTTTCATAAGAAACGAGAGGTGGATATCGCTGTGGACTTGTGGCGATTTGTCCCCAAGAGTAAGCAGGGTCCAGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MTS PrmA

Protein Analysis

250

Amino Acids

28.21

Weight (kDa)

5.97

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 28 - 93 7.2e-10 Ribosomal protein L11 methyltransferase (PrmA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 237
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 1 cut(s) 468
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 3 cut(s) 181, 288, 668
AfiI CCNNNNNNNGG 2 cut(s) 61, 482
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 4 cut(s) 254, 416, 532, 613
AjuI GAANNNNNNNTTGG 4 cut(s) 12, 44, 207, 239
AluBI AGCT 9 cut(s) 7, 16, 67, 197, 260, 330, 446, 548, 643
AluI AGCT 9 cut(s) 7, 16, 67, 197, 260, 330, 446, 548, 643
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 1 cut(s) 233
ApeKI GCWGC 4 cut(s) 13, 194, 596, 604
ApoI RAATTY 1 cut(s) 124
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 86, 740
AsuNHI GCTAGC 1 cut(s) 617
AvaII GGWCC 2 cut(s) 86, 740
BaeI ACNNNNGTAYC 2 cut(s) 450, 483
BauI CACGAG 1 cut(s) 574
BbvCI CCTCAGC 2 cut(s) 273, 627
BbvI GCAGC 4 cut(s) 25, 206, 608, 616
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 2 cut(s) 618, 751
BfmI CTRYAG 1 cut(s) 117
BglII AGATCT 1 cut(s) 747
BisI GCNGC 4 cut(s) 14, 195, 597, 605
BlsI GCNGC 4 cut(s) 15, 196, 598, 606
Bme18I GGWCC 2 cut(s) 86, 740
BmgT120I GGNCC 2 cut(s) 86, 740
BmiI GGNNCC 2 cut(s) 88, 741
BmsI GCATC 1 cut(s) 107
BmtI GCTAGC 1 cut(s) 621
Bpu10I CCTNAGC 2 cut(s) 273, 627
BpuEI CTTGAG 2 cut(s) 302, 528
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 482
Bse1I ACTGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 61, 482
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 264, 618
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 4 cut(s) 25, 206, 608, 616
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 2 cut(s) 61, 482
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 707
Bso31I GGTCTC 1 cut(s) 41
Bsp143I GATC 3 cut(s) 238, 580, 747
BspCNI CTCAG 2 cut(s) 265, 619
BspLI GGNNCC 2 cut(s) 88, 741
BspMAI CTGCAG 1 cut(s) 121
BspOI GCTAGC 1 cut(s) 621
BspPI GGATC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 3 cut(s) 238, 580, 747
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 574
BssT1I CCWWGG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 574
Bst4CI ACNGT 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 107, 619
BstDEI CTNAG 3 cut(s) 273, 433, 627
BstF5I GGATG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 3 cut(s) 241, 583, 750
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 3 cut(s) 238, 580, 747
BstMWI GCNNNNNNNGC 4 cut(s) 13, 336, 545, 623
BstNSI RCATGY 2 cut(s) 109, 221
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 4 cut(s) 25, 206, 608, 616
BstX2I RGATCY 1 cut(s) 747
BstYI RGATCY 1 cut(s) 747
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 2 cut(s) 114, 628
BtsIMutI CAGTG 2 cut(s) 114, 628
Cac8I GCNNGC 2 cut(s) 107, 619
CfoI GCGC 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 86, 740
Csp6I GTAC 3 cut(s) 180, 287, 667
CviAII CATG 4 cut(s) 106, 218, 508, 584
CviQI GTAC 3 cut(s) 180, 287, 667
DdeI CTNAG 3 cut(s) 273, 433, 627
DpnI GATC 3 cut(s) 240, 582, 749
DpnII GATC 3 cut(s) 238, 580, 747
Eco130I CCWWGG 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 697
Eco47I GGWCC 2 cut(s) 86, 740
Eco57I CTGAAG 1 cut(s) 468
EcoRI GAATTC 1 cut(s) 124
EcoRV GATATC 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 4 cut(s) 109, 221, 511, 587
FaqI GGGAC 1 cut(s) 707
FatI CATG 4 cut(s) 105, 217, 507, 583
Fnu4HI GCNGC 4 cut(s) 14, 195, 597, 605
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 4 cut(s) 14, 195, 597, 605
FspBI CTAG 2 cut(s) 618, 751
GlaI GCGC 1 cut(s) 211
GluI GCNGC 4 cut(s) 14, 195, 597, 605
HhaI GCGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 4 cut(s) 109, 221, 511, 587
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HinfI GANTC 3 cut(s) 201, 245, 472
Hpy166II GTNNAC 1 cut(s) 706
Hpy188I TCNGA 1 cut(s) 492
Hpy188III TCNNGA 4 cut(s) 242, 251, 427, 743
Hpy8I GTNNAC 1 cut(s) 706
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 526
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4IV ACGT 2 cut(s) 234, 665
HpyCH4V TGCA 5 cut(s) 98, 119, 194, 420, 604
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 336, 545, 623
HpyF3I CTNAG 3 cut(s) 273, 433, 627
HpySE526I ACGT 2 cut(s) 234, 665
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 4 cut(s) 109, 221, 511, 587
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 3 cut(s) 238, 580, 747
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 6 cut(s) 53, 69, 183, 255, 376, 722
Lsp1109I GCAGC 4 cut(s) 25, 206, 608, 616
LweI GCATC 1 cut(s) 107
MaeI CTAG 2 cut(s) 618, 751
MaeII ACGT 2 cut(s) 234, 665
MaeIII GTNAC 1 cut(s) 143
MalI GATC 3 cut(s) 240, 582, 749
MboI GATC 3 cut(s) 238, 580, 747
MflI RGATCY 1 cut(s) 747
MluCI AATT 3 cut(s) 124, 254, 608
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 2 cut(s) 64, 75
MnlI CCTC 7 cut(s) 35, 268, 277, 486, 580, 622, 682
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 197
MwoI GCNNNNNNNGC 4 cut(s) 13, 336, 545, 623
NdeII GATC 3 cut(s) 238, 580, 747
NheI GCTAGC 1 cut(s) 617
NlaIII CATG 4 cut(s) 109, 221, 511, 587
NlaIV GGNNCC 2 cut(s) 88, 741
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 2 cut(s) 109, 221
PaeI GCATGC 1 cut(s) 109
PciI ACATGT 1 cut(s) 217
PfeI GAWTC 2 cut(s) 245, 472
PkrI GCNGC 4 cut(s) 15, 196, 598, 606
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PscI ACATGT 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 88, 741
PspPI GGNCC 2 cut(s) 86, 740
PsrI GAACNNNNNNTAC 2 cut(s) 270, 302
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 747
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 3 cut(s) 181, 288, 668
RsaNI GTAC 3 cut(s) 180, 287, 667
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 4 cut(s) 14, 195, 597, 605
Sau3AI GATC 3 cut(s) 238, 580, 747
Sau96I GGNCC 2 cut(s) 86, 740
SchI GAGTC 1 cut(s) 195
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 2 cut(s) 86, 740
SmlI CTYRAG 3 cut(s) 8, 281, 543
SmoI CTYRAG 3 cut(s) 8, 281, 543
SphI GCATGC 1 cut(s) 109
Sse9I AATT 3 cut(s) 124, 254, 608
SspMI CTAG 2 cut(s) 618, 751
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 45
TaiI ACGT 2 cut(s) 237, 668
TaqI TCGA 3 cut(s) 18, 237, 646
TasI AATT 3 cut(s) 124, 254, 608
TfiI GAWTC 2 cut(s) 245, 472
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 121, 628
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 4 cut(s) 13, 194, 596, 604
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 4 cut(s) 17, 117, 485, 665
TspRI CASTG 2 cut(s) 121, 628
VpaK11BI GGWCC 2 cut(s) 86, 740
XapI RAATTY 1 cut(s) 124
XceI RCATGY 2 cut(s) 109, 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XspI CTAG 2 cut(s) 618, 751
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.