Rh2DG060400

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008537
Physical Location & Seq
Forward (+)
4442264 .. 4444556
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG060400.1

Sequence Viewer

Length: 717 bp
ATGAAAGAAAAGGGGCAGTTGGAACTAAACCTTGGCAGATTCTTGACTCTGGGTGTTTCGTCAGGGACTCTCGGGATGAAGCTCAAGCAGCTCGAAAGCCTCCTTGGTGGTCTCCAACAGTTCTCCAACCCAAAGGTGGAGCTGGAACAATACCCAACTGGACCCCACATTGCATCTCGCATGCTCTACACTGCAGAGAATTCATTTGGGGATGTGTGTGACAAGGTAGTGGCTGATTTTGGCTGTGGTTGTGGTACATTGGGGGTTGCAGCTGGACTCTTGGGCGCAGAACATGTGATTGGCATTGACGTCGATCCAGAATCTCTTGAATTAGCTTCACTAAATGCTGAGGAACTTGAGTTGGACATAGATTATATTCAATGCAACATCAAGAACTTAGGGTGGAGAGCTGAAGTTGTTGATACTATTGTAATGAATCCTCCATTTGGAACTCGGAAAAAGGGTGCTGACATGGATTTTCTCTCTGTGGCTTTGAAGGTTGCTTCTCAAGCTGTTTATTCCTTACATAAAACCTCCACGAGAGATCATGTGAAAAGGGCAGCCTTGCAGCAATTCAATGCTAGCAGTGCTGAGGTTATATGTGAGCTTCGATATGATTTACCACAAACGTACAAGTTTCATAAGAAACGAGAGGTGGATATCGCTGTGGACTTGTGGCGATTTGTCCCCAAGAGTAAGCAGGGTCCAGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MTS PrmA

Protein Analysis

238

Amino Acids

26.17

Weight (kDa)

5.6

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PrmA PF06325 53 - 146 6.7e-11 Ribosomal protein L11 methyltransferase (PrmA)
MTS PF05175 73 - 154 4.8e-12 Methyltransferase small domain
Methyltransf_31 PF13847 75 - 149 6e-09 Methyltransferase domain
UPF0020 PF01170 75 - 154 3e-07 RMKL-like, methyltransferase domain
Methyltransf_25 PF13649 77 - 146 8e-10 Methyltransferase domain
Methyltransf_11 PF08241 79 - 146 3.2e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
AclWI GGATC 1 cut(s) 308
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 2 cut(s) 256, 632
AfiI CCNNNNNNNGG 2 cut(s) 136, 446
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 4 cut(s) 329, 380, 496, 577
AjuI GAANNNNNNNTTGG 6 cut(s) 15, 47, 87, 119, 282, 314
AluBI AGCT 8 cut(s) 82, 91, 142, 272, 335, 410, 512, 607
AluI AGCT 8 cut(s) 82, 91, 142, 272, 335, 410, 512, 607
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 71
ApeKI GCWGC 4 cut(s) 88, 269, 560, 568
ApoI RAATTY 1 cut(s) 199
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 161, 704
AsuNHI GCTAGC 1 cut(s) 581
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 2 cut(s) 161, 704
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BauI CACGAG 1 cut(s) 538
BbvCI CCTCAGC 2 cut(s) 348, 591
BbvI GCAGC 4 cut(s) 100, 281, 572, 580
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 582, 715
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 711
BisI GCNGC 4 cut(s) 89, 270, 561, 569
BlsI GCNGC 4 cut(s) 90, 271, 562, 570
Bme18I GGWCC 2 cut(s) 161, 704
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 161, 704
BmiI GGNNCC 2 cut(s) 163, 705
BmsI GCATC 1 cut(s) 182
BmtI GCTAGC 1 cut(s) 585
Bpu10I CCTNAGC 2 cut(s) 348, 591
BpuEI CTTGAG 3 cut(s) 68, 377, 492
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 31, 103
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 446
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 31, 103
BseGI GGATG 2 cut(s) 81, 217
BseLI CCNNNNNNNGG 2 cut(s) 136, 446
BseMI GCAATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 339, 582
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 4 cut(s) 100, 281, 572, 580
BsiHKCI CYCGRG 1 cut(s) 71
BslFI GGGAC 2 cut(s) 79, 671
BslI CCNNNNNNNGG 2 cut(s) 136, 446
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 2 cut(s) 79, 671
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 71
Bsp143I GATC 3 cut(s) 313, 544, 711
BspCNI CTCAG 2 cut(s) 340, 583
BspLI GGNNCC 2 cut(s) 163, 705
BspMAI CTGCAG 1 cut(s) 196
BspOI GCTAGC 1 cut(s) 585
BspPI GGATC 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 168
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 31, 103
BssMI GATC 3 cut(s) 313, 544, 711
BssNI GRCGYC 1 cut(s) 309
BssSI CACGAG 1 cut(s) 538
BssT1I CCWWGG 2 cut(s) 31, 103
Bst2BI CACGAG 1 cut(s) 538
Bst4CI ACNGT 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 182, 583
BstDEI CTNAG 3 cut(s) 348, 397, 591
BstF5I GGATG 2 cut(s) 81, 217
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 3 cut(s) 316, 547, 714
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 3 cut(s) 313, 544, 711
BstMWI GCNNNNNNNGC 3 cut(s) 88, 509, 587
BstNSI RCATGY 2 cut(s) 184, 296
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 4 cut(s) 100, 281, 572, 580
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BtsCI GGATG 2 cut(s) 81, 217
BtsI GCAGTG 2 cut(s) 189, 592
BtsIMutI CAGTG 2 cut(s) 189, 592
Cac8I GCNNGC 2 cut(s) 182, 583
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 161, 704
Csp6I GTAC 2 cut(s) 255, 631
CviAII CATG 4 cut(s) 181, 293, 472, 548
CviQI GTAC 2 cut(s) 255, 631
DdeI CTNAG 3 cut(s) 348, 397, 591
DpnI GATC 3 cut(s) 315, 546, 713
DpnII GATC 3 cut(s) 313, 544, 711
Eco130I CCWWGG 2 cut(s) 31, 103
Eco31I GGTCTC 1 cut(s) 116
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 2 cut(s) 161, 704
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 199
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 2 cut(s) 31, 103
ErhI CCWWGG 2 cut(s) 31, 103
FaeI CATG 4 cut(s) 184, 296, 475, 551
FaqI GGGAC 2 cut(s) 79, 671
FatI CATG 4 cut(s) 180, 292, 471, 547
Fnu4HI GCNGC 4 cut(s) 89, 270, 561, 569
FokI GGATG 2 cut(s) 88, 224
Fsp4HI GCNGC 4 cut(s) 89, 270, 561, 569
FspBI CTAG 2 cut(s) 582, 715
GlaI GCGC 1 cut(s) 286
GluI GCNGC 4 cut(s) 89, 270, 561, 569
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 4 cut(s) 184, 296, 475, 551
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 6 cut(s) 39, 46, 67, 276, 320, 436
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 1 cut(s) 456
Hpy188III TCNNGA 6 cut(s) 43, 73, 317, 326, 391, 707
Hpy8I GTNNAC 1 cut(s) 670
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 490
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4IV ACGT 2 cut(s) 309, 629
HpyCH4V TGCA 5 cut(s) 173, 194, 269, 384, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 509, 587
HpyF3I CTNAG 3 cut(s) 348, 397, 591
HpySE526I ACGT 2 cut(s) 309, 629
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 4 cut(s) 184, 296, 475, 551
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 3 cut(s) 313, 544, 711
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 7 cut(s) 35, 48, 128, 144, 258, 330, 686
Lsp1109I GCAGC 4 cut(s) 100, 281, 572, 580
LweI GCATC 1 cut(s) 182
MaeI CTAG 2 cut(s) 582, 715
MaeII ACGT 2 cut(s) 309, 629
MaeIII GTNAC 1 cut(s) 218
MalI GATC 3 cut(s) 315, 546, 713
MboI GATC 3 cut(s) 313, 544, 711
MflI RGATCY 1 cut(s) 711
MluCI AATT 3 cut(s) 199, 329, 572
MlyI GAGTC 3 cut(s) 40, 61, 270
MmeI TCCRAC 3 cut(s) 139, 150, 342
MnlI CCTC 6 cut(s) 110, 343, 450, 544, 586, 646
MspA1I CMGCKG 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 88, 509, 587
NdeII GATC 3 cut(s) 313, 544, 711
NheI GCTAGC 1 cut(s) 581
NlaIII CATG 4 cut(s) 184, 296, 475, 551
NlaIV GGNNCC 2 cut(s) 163, 705
NmuCI GTSAC 1 cut(s) 218
NspI RCATGY 2 cut(s) 184, 296
PaeI GCATGC 1 cut(s) 184
PciI ACATGT 1 cut(s) 292
PfeI GAWTC 3 cut(s) 39, 320, 436
PkrI GCNGC 4 cut(s) 90, 271, 562, 570
PleI GAGTC 3 cut(s) 40, 61, 270
PpsI GAGTC 3 cut(s) 40, 61, 270
PscI ACATGT 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 163, 705
PspPI GGNCC 2 cut(s) 161, 704
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 711
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 256, 632
RsaNI GTAC 2 cut(s) 255, 631
SatI GCNGC 4 cut(s) 89, 270, 561, 569
Sau3AI GATC 3 cut(s) 313, 544, 711
Sau96I GGNCC 2 cut(s) 161, 704
SchI GAGTC 3 cut(s) 40, 61, 270
SfaNI GCATC 1 cut(s) 182
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 2 cut(s) 161, 704
SmlI CTYRAG 3 cut(s) 83, 356, 507
SmoI CTYRAG 3 cut(s) 83, 356, 507
SphI GCATGC 1 cut(s) 184
Sse9I AATT 3 cut(s) 199, 329, 572
SspMI CTAG 2 cut(s) 582, 715
StyI CCWWGG 2 cut(s) 31, 103
TaaI ACNGT 1 cut(s) 120
TaiI ACGT 2 cut(s) 312, 632
TaqI TCGA 3 cut(s) 93, 312, 610
TasI AATT 3 cut(s) 199, 329, 572
TfiI GAWTC 3 cut(s) 39, 320, 436
TscAI CASTG 2 cut(s) 196, 592
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 4 cut(s) 88, 269, 560, 568
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 5 cut(s) 17, 92, 192, 449, 629
TspRI CASTG 2 cut(s) 196, 592
VpaK11BI GGWCC 2 cut(s) 161, 704
XapI RAATTY 1 cut(s) 199
XceI RCATGY 2 cut(s) 184, 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XspI CTAG 2 cut(s) 582, 715
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.