Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8413877.1

Orthogroup ID

OG0008537

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1097

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8413877.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ttggacatagattatattcaatgcaacatcaagaacttagggtggagagctgaagttgttgatactattgtaatgaatcctccatttggaactcggaaaaagggtgctgacatggattttctctctgtggctttgaaggttgcttctcaagctgtttattccttacataaaacctccacgagagatcatgtgaaaagggcagccttgcagcaattcaatgctagcagtgctgaggttatatgtgagcttcgatatgatttaccacaaacgtacaagtttcataagaaacgagaggtggatatcgctgtggacttgtggcgatttgtccccaagagtaagcagggtccagagatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS PrmA

Protein Analysis

118

Amino Acids

13.51

Weight (kDa)

9.15

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28830 AT4G28830 AT4G28830 AT4G28830
fragaria_vesca	FvH4_1g05640 FvH4_1g05640
malus_domestica	MD02G1057400.v1.1
prunus_persica	Prupe.7G225500_v2.0.a1 Prupe.7G225500_v2.0.a1 Prupe.7G225500_v2.0.a1
pyrus_communis	pycom02g04650
rosa_chinensis	RchiOBHm_Chr2g0091271
rosa_laevigata	RLG00000016200
rosa_multiflora	Rmu_co8413877.1_g000001 Rmu_sc0002270.1_g000030
rosa_roxburghii	Rroxscaffold_2G00150300
rosa_rugosa	Rorug02G0015400 Rorug02G0015500
rosa_samantha	Rh2AG060900 Rh2BG059900 Rh2CG061900 Rh2DG060400
rosa_wichuraiana	Rw2G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	3 cut(s)	20, 136, 217
AluBI	AGCT	3 cut(s)	50, 152, 247
AluI	AGCT	3 cut(s)	50, 152, 247
ApeKI	GCWGC	2 cut(s)	200, 208
AspS9I	GGNCC	1 cut(s)	344
AsuNHI	GCTAGC	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	344
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BauI	CACGAG	1 cut(s)	178
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	212, 220
BfaI	CTAG	2 cut(s)	222, 355
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	2 cut(s)	201, 209
BlsI	GCNGC	2 cut(s)	202, 210
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	345
BmtI	GCTAGC	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	212, 220
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	184, 351
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	345
BspOI	GCTAGC	1 cut(s)	225
BssMI	GATC	2 cut(s)	184, 351
BssSI	CACGAG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	37, 231
BstKTI	GATC	2 cut(s)	187, 354
BstMBI	GATC	2 cut(s)	184, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 227
BstV1I	GCAGC	2 cut(s)	212, 220
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	2 cut(s)	112, 188
CviJI	RGCY	5 cut(s)	50, 131, 152, 203, 247
CviKI_1	RGCY	5 cut(s)	50, 131, 152, 203, 247
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	37, 231
DpnI	GATC	2 cut(s)	186, 353
DpnII	GATC	2 cut(s)	184, 351
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	72
EcoRV	GATATC	1 cut(s)	301
FaeI	CATG	2 cut(s)	115, 191
FaiI	YATR	9 cut(s)	8, 15, 113, 168, 189, 239, 241, 255, 282
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	111, 187
Fnu4HI	GCNGC	2 cut(s)	201, 209
Fsp4HI	GCNGC	2 cut(s)	201, 209
FspBI	CTAG	2 cut(s)	222, 355
GluI	GCNGC	2 cut(s)	201, 209
Hin1II	CATG	2 cut(s)	115, 191
HinfI	GANTC	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	2 cut(s)	31, 347
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	24, 208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 227
HpyF3I	CTNAG	2 cut(s)	37, 231
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	115, 191
Kzo9I	GATC	2 cut(s)	184, 351
LpnPI	CCDG	1 cut(s)	326
Lsp1109I	GCAGC	2 cut(s)	212, 220
MaeI	CTAG	2 cut(s)	222, 355
MaeII	ACGT	1 cut(s)	269
MalI	GATC	2 cut(s)	186, 353
MboI	GATC	2 cut(s)	184, 351
MflI	RGATCY	1 cut(s)	351
MluCI	AATT	1 cut(s)	212
MnlI	CCTC	4 cut(s)	90, 184, 226, 286
MwoI	GCNNNNNNNGC	2 cut(s)	149, 227
NdeII	GATC	2 cut(s)	184, 351
NheI	GCTAGC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	115, 191
NlaIV	GGNNCC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	202, 210
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SatI	GCNGC	2 cut(s)	201, 209
Sau3AI	GATC	2 cut(s)	184, 351
Sau96I	GGNCC	1 cut(s)	344
SetI	ASST	8 cut(s)	52, 141, 154, 176, 237, 249, 272, 297
SinI	GGWCC	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	1 cut(s)	212
SspMI	CTAG	2 cut(s)	222, 355
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	250
TasI	AATT	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	76
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	2 cut(s)	200, 208
TspDTI	ATGAA	2 cut(s)	89, 269
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	344
XspI	CTAG	2 cut(s)	222, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.