Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010515

Physical Location & Seq

Genomic Coordinates Forward (+)

4135430 .. 4137837

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGTCGTTTCTGTTGGTGGTGATGGATCTTGCTCACCATTTTCATCTCAGGCCCAGATTTCACAACCCAAAGAGGCTCCACATGAAGCTGTGGTAGTCAAGGAAGAAGAAAAAGAAGAAGAAGAGGCACTGAATTGTAAAGGTGGTGATTTTCATGGGTCATCTTCCAATGAGAAACTGAAGGAATCAAAACCAGAGGTGGTGCAGATCAAAGAAGAGAGCATAGATTTTGTGGTTGATGATTATGATGGTAGAGATTGCTTCAATTATGGTTTTAGTGGATCATATTCTTCATCTTCTTCAAAAGTGTTGCCTAAACCCATGGAGTGTTTGCTGGAAAATGGGCCGCCACCTTTTCTGAACAAGACCTTTCAGGTGGTGGATGACCCGGAAACCGACCCGATTGTGTCGTGGAGCCAAGATCACCAAAGCTTCATTGTTAGGGACTGCCATGAGTTCTCTAAGACCATATTACCCAAGTACTTCAAGCACAGCAATTTCGCAAGCTTCGTTCGCCAGCTCAATACTTATGGATTCAAGAAGGTTGATCCTGATAGGTGGGAGTTTGCAAATGAAGGGTTTCAAGGAGGGAAGAAGCACTTGCTGAAAAGCATCAAGAGAAGAAGCAGATACAACAGGCAGCCACAAGGAAGCAATGTGTCAGTTAATTCAACCAAAAAAGCCAGGTTGGATGCCCAACTCGAAACTCTGAAGAAGGATCAGGATGTACTGAAAGACGAAATCTTGAATCTCAAACAGCAACAGAAATACTCGCAGCATCAGCTGATTGCTTTCGAAGAGAGGATTCAAACTTCTGAGTGTAAGCAGCAGACGATGCTGCTTTTCCTCACCGAGACAACAAGAGAGCCCAATTTTGTGGAGCGGCTAATGCAGAAAAGAGTGATGAAGAGAGAGCTCGAGGGAGGCGATTTGGCAAAGAGAAGGAGGTTAATTTCAGCCCAAGGTTTTGAAGATTTTGGTGATTGTGGAGACCAACCTCAAGTGTTTGCTGATCGATTGCCAGAAGCAGAACTTGCAACTCAACAGCAAGAAACCCCATTGCCTGCTTCCTTGGTTGACAAGTCATGTAGTTCAGTTCAAAATAACAAGCCACAGGCAGAAGTGCACTATGTTTACCATGATGTGTCCAAGAAATTGCTAGATGAAAATTCAGTTTTTGATGATGAATGTGCAGTCAATGACTCAAACGTTTACCAGGAATTGGAGGATTTAATTACCAGGCACCACAACTTTGATGATTTGATTGTCAAGCCACACGATTGGAGTGGATATGTCAGTAACTACCTGGTTGAGCAAGCTGGATGTGTTGGATCAATGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

448

Amino Acids

50.9

Weight (kDa)

5.23

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	119 - 208	7.1e-30	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07800
malus_domestica	MD02G1082000.v1.1 MD12G1184500.v1.1 MD15G1209400.v1.1
prunus_persica	Prupe.7G206900_v2.0.a1
pyrus_communis	pycom02g06490 pycom15g18570
rosa_chinensis	RchiOBHm_Chr2g0093671
rosa_laevigata	RLG00000016427
rosa_roxburghii	Rroxscaffold_2G00147910
rosa_rugosa	Rorug02G0038700 Rorug05G0356600
rosa_samantha	Rh2AG085100 Rh2BG085600 Rh2CG087900 Rh2DG083400 Rh3AG094700 Rh3CG099000 Rh3DG098400
rosa_wichuraiana	Rw0G013900 Rw3G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1242
AccB7I	CCANNNNNTGG	1 cut(s)	1222
AccBSI	CCGCTC	1 cut(s)	883
AciI	CCGC	2 cut(s)	347, 883
AclI	AACGTT	1 cut(s)	1209
AclWI	GGATC	5 cut(s)	34, 289, 542, 726, 1339
AcsI	RAATTY	1 cut(s)	1168
AcuI	CTGAAG	2 cut(s)	200, 731
AfaI	GTAC	2 cut(s)	482, 729
AfiI	CCNNNNNNNGG	1 cut(s)	1222
AjnI	CCWGG	4 cut(s)	683, 1215, 1238, 1305
AluBI	AGCT	7 cut(s)	89, 432, 507, 520, 784, 916, 1319
AluI	AGCT	7 cut(s)	89, 432, 507, 520, 784, 916, 1319
Alw21I	GWGCWC	2 cut(s)	918, 1128
Alw26I	GTCTC	2 cut(s)	848, 984
Alw44I	GTGCAC	1 cut(s)	1124
AlwI	GGATC	5 cut(s)	34, 289, 542, 726, 1339
Ama87I	CYCGRG	1 cut(s)	917
AoxI	GGCC	2 cut(s)	51, 344
ApaLI	GTGCAC	1 cut(s)	1124
ApeKI	GCWGC	4 cut(s)	640, 775, 826, 838
ApoI	RAATTY	1 cut(s)	1168
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	2 cut(s)	52, 344
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	6 cut(s)	27, 32, 158, 416, 841, 992
AsuII	TTCGAA	1 cut(s)	795
AvaI	CYCGRG	1 cut(s)	917
BaeGI	GKGCMC	1 cut(s)	1128
BanI	GGYRCC	1 cut(s)	1242
BanII	GRGCYC	2 cut(s)	870, 918
Bbv12I	GWGCWC	2 cut(s)	918, 1128
BbvI	GCAGC	4 cut(s)	652, 787, 825, 838
BccI	CCATC	2 cut(s)	17, 242
BciT130I	CCWGG	4 cut(s)	685, 1217, 1240, 1307
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	848, 984
BfaI	CTAG	1 cut(s)	1160
BisI	GCNGC	6 cut(s)	347, 641, 776, 827, 839, 884
BlsI	GCNGC	6 cut(s)	348, 642, 777, 828, 840, 885
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	5 cut(s)	389, 685, 1217, 1240, 1307
BmeT110I	CYCGRG	1 cut(s)	917
BmgT120I	GGNCC	2 cut(s)	52, 344
BmiI	GGNNCC	3 cut(s)	78, 416, 1244
BmrFI	CCNGG	5 cut(s)	389, 685, 1217, 1240, 1307
BmsI	GCATC	4 cut(s)	621, 682, 787, 825
Bpu14I	TTCGAA	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	984
BpuMI	CCSGG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	1015
BsaI	GGTCTC	1 cut(s)	984
BsaJI	CCNNGG	3 cut(s)	321, 961, 1071
Bsc4I	CCNNNNNNNGG	1 cut(s)	1222
Bse3DI	GCAATG	2 cut(s)	661, 1058
BseBI	CCWGG	4 cut(s)	685, 1217, 1240, 1307
BseCI	ATCGAT	1 cut(s)	1015
BseDI	CCNNGG	3 cut(s)	321, 961, 1071
BseGI	GGATG	4 cut(s)	388, 697, 730, 1328
BseLI	CCNNNNNNNGG	1 cut(s)	1222
BseMI	GCAATG	2 cut(s)	661, 1058
BseMII	CTCAG	2 cut(s)	62, 807
BseSI	GKGCMC	1 cut(s)	1128
BseXI	GCAGC	4 cut(s)	652, 787, 825, 838
BsgI	GTGCAG	2 cut(s)	224, 1212
BshFI	GGCC	2 cut(s)	53, 346
BshNI	GGYRCC	1 cut(s)	1242
BshVI	ATCGAT	1 cut(s)	1015
BsiHKAI	GWGCWC	2 cut(s)	918, 1128
BsiHKCI	CYCGRG	1 cut(s)	917
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	1222
BsmAI	GTCTC	2 cut(s)	848, 984
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	53, 346
Bso31I	GGTCTC	1 cut(s)	984
BsoBI	CYCGRG	1 cut(s)	917
Bsp119I	TTCGAA	1 cut(s)	795
Bsp1286I	GDGCHC	3 cut(s)	870, 918, 1128
Bsp143I	GATC	8 cut(s)	26, 207, 281, 421, 547, 718, 1012, 1331
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	2 cut(s)	347, 883
BspANI	GGCC	2 cut(s)	53, 346
BspCNI	CTCAG	2 cut(s)	61, 808
BspDI	ATCGAT	1 cut(s)	1015
BspLI	GGNNCC	3 cut(s)	78, 416, 1244
BspPI	GGATC	5 cut(s)	34, 289, 542, 726, 1339
BspT104I	TTCGAA	1 cut(s)	795
BspT107I	GGYRCC	1 cut(s)	1242
BspTNI	GGTCTC	1 cut(s)	984
BsrBI	CCGCTC	1 cut(s)	883
BsrDI	GCAATG	2 cut(s)	661, 1058
BssECI	CCNNGG	3 cut(s)	321, 961, 1071
BssMI	GATC	8 cut(s)	26, 207, 281, 421, 547, 718, 1012, 1331
BssT1I	CCWWGG	3 cut(s)	321, 961, 1071
Bst2UI	CCWGG	4 cut(s)	685, 1217, 1240, 1307
Bst6I	CTCTTC	4 cut(s)	117, 210, 792, 902
BstAPI	GCANNNNNTGC	2 cut(s)	835, 1034
BstBI	TTCGAA	1 cut(s)	795
BstC8I	GCNNGC	4 cut(s)	505, 518, 1065, 1317
BstDEI	CTNAG	3 cut(s)	48, 462, 816
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	4 cut(s)	388, 697, 730, 1328
BstKTI	GATC	8 cut(s)	29, 210, 284, 424, 550, 721, 1015, 1334
BstMAI	GTCTC	2 cut(s)	848, 984
BstMBI	GATC	8 cut(s)	26, 207, 281, 421, 547, 718, 1012, 1331
BstMWI	GCNNNNNNNGC	5 cut(s)	513, 781, 835, 889, 1034
BstNI	CCWGG	4 cut(s)	685, 1217, 1240, 1307
BstSCI	CCNGG	5 cut(s)	387, 683, 1215, 1238, 1305
BstSLI	GKGCMC	1 cut(s)	1128
BstV1I	GCAGC	4 cut(s)	652, 787, 825, 838
BstX2I	RGATCY	1 cut(s)	26
BstXI	CCANNNNNNTGG	2 cut(s)	877, 1281
BstYI	RGATCY	1 cut(s)	26
Bsu15I	ATCGAT	1 cut(s)	1015
BsuRI	GGCC	2 cut(s)	53, 346
BsuTUI	ATCGAT	1 cut(s)	1015
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	4 cut(s)	388, 697, 730, 1328
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	4 cut(s)	505, 518, 1065, 1317
Cfr13I	GGNCC	2 cut(s)	52, 344
ClaI	ATCGAT	1 cut(s)	1015
CsiI	ACCWGGT	1 cut(s)	1305
Csp6I	GTAC	2 cut(s)	481, 728
CviAII	CATG	6 cut(s)	83, 155, 322, 452, 1086, 1139
CviQI	GTAC	2 cut(s)	481, 728
DdeI	CTNAG	3 cut(s)	48, 462, 816
DpnI	GATC	8 cut(s)	28, 209, 283, 423, 549, 720, 1014, 1333
DpnII	GATC	8 cut(s)	26, 207, 281, 421, 547, 718, 1012, 1331
Eam1104I	CTCTTC	4 cut(s)	117, 210, 792, 902
EarI	CTCTTC	4 cut(s)	117, 210, 792, 902
Ecl136II	GAGCTC	1 cut(s)	916
Eco130I	CCWWGG	3 cut(s)	321, 961, 1071
Eco24I	GRGCYC	2 cut(s)	870, 918
Eco31I	GGTCTC	1 cut(s)	984
Eco53kI	GAGCTC	1 cut(s)	916
Eco57I	CTGAAG	2 cut(s)	200, 731
Eco88I	CYCGRG	1 cut(s)	917
EcoICRI	GAGCTC	1 cut(s)	916
EcoRII	CCWGG	4 cut(s)	683, 1215, 1238, 1305
EcoT14I	CCWWGG	3 cut(s)	321, 961, 1071
EcoT38I	GRGCYC	2 cut(s)	870, 918
ErhI	CCWWGG	3 cut(s)	321, 961, 1071
FaeI	CATG	6 cut(s)	86, 158, 325, 455, 1089, 1142
FalI	AAGNNNNNCTT	4 cut(s)	584, 616, 1017, 1049
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	6 cut(s)	82, 154, 321, 451, 1085, 1138
Fnu4HI	GCNGC	6 cut(s)	347, 641, 776, 827, 839, 884
FokI	GGATG	4 cut(s)	395, 704, 737, 1335
FriOI	GRGCYC	2 cut(s)	870, 918
Fsp4HI	GCNGC	6 cut(s)	347, 641, 776, 827, 839, 884
FspBI	CTAG	1 cut(s)	1160
GluI	GCNGC	6 cut(s)	347, 641, 776, 827, 839, 884
HaeIII	GGCC	2 cut(s)	53, 346
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	6 cut(s)	86, 158, 325, 455, 1089, 1142
HincII	GTYRAC	1 cut(s)	1078
HindII	GTYRAC	1 cut(s)	1078
HindIII	AAGCTT	2 cut(s)	430, 505
HinfI	GANTC	5 cut(s)	185, 534, 748, 805, 1202
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	6 cut(s)	27, 32, 158, 416, 841, 992
Hpy166II	GTNNAC	4 cut(s)	1078, 1126, 1135, 1213
Hpy188I	TCNGA	3 cut(s)	360, 711, 817
Hpy188III	TCNNGA	5 cut(s)	538, 551, 616, 722, 745
Hpy8I	GTNNAC	4 cut(s)	1078, 1126, 1135, 1213
HpyAV	CCTTC	5 cut(s)	175, 535, 569, 709, 936
HpyCH4IV	ACGT	1 cut(s)	1209
HpyCH4V	TGCA	6 cut(s)	205, 569, 892, 1037, 1126, 1193
HpyF10VI	GCNNNNNNNGC	5 cut(s)	513, 781, 835, 889, 1034
HpyF3I	CTNAG	3 cut(s)	48, 462, 816
HpySE526I	ACGT	1 cut(s)	1209
Hsp92II	CATG	6 cut(s)	86, 158, 325, 455, 1089, 1142
Kzo9I	GATC	8 cut(s)	26, 207, 281, 421, 547, 718, 1012, 1331
LmnI	GCTCC	3 cut(s)	82, 414, 880
Lsp1109I	GCAGC	4 cut(s)	652, 787, 825, 838
LweI	GCATC	4 cut(s)	621, 682, 787, 825
MabI	ACCWGGT	1 cut(s)	1305
MaeI	CTAG	1 cut(s)	1160
MaeII	ACGT	1 cut(s)	1209
MaeIII	GTNAC	1 cut(s)	1298
MalI	GATC	8 cut(s)	28, 209, 283, 423, 549, 720, 1014, 1333
MbiI	CCGCTC	1 cut(s)	883
MboI	GATC	8 cut(s)	26, 207, 281, 421, 547, 718, 1012, 1331
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	3 cut(s)	870, 918, 1128
MlyI	GAGTC	1 cut(s)	1196
MmeI	TCCRAC	2 cut(s)	669, 1309
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	3 cut(s)	666, 950, 1232
MspA1I	CMGCKG	1 cut(s)	784
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	5 cut(s)	389, 685, 1217, 1240, 1307
MvaI	CCWGG	4 cut(s)	685, 1217, 1240, 1307
MwoI	GCNNNNNNNGC	5 cut(s)	513, 781, 835, 889, 1034
NciI	CCSGG	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	8 cut(s)	26, 207, 281, 421, 547, 718, 1012, 1331
NlaIII	CATG	6 cut(s)	86, 158, 325, 455, 1089, 1142
NlaIV	GGNNCC	3 cut(s)	78, 416, 1244
NspV	TTCGAA	1 cut(s)	795
PaeR7I	CTCGAG	1 cut(s)	917
PcsI	WCGNNNNNNNCGW	2 cut(s)	507, 924
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	4 cut(s)	185, 534, 748, 805
PflMI	CCANNNNNTGG	1 cut(s)	1222
PkrI	GCNGC	6 cut(s)	348, 642, 777, 828, 840, 885
PleI	GAGTC	1 cut(s)	1196
PpsI	GAGTC	1 cut(s)	1196
Psp124BI	GAGCTC	1 cut(s)	918
Psp1406I	AACGTT	1 cut(s)	1209
Psp6I	CCWGG	4 cut(s)	683, 1215, 1238, 1305
PspGI	CCWGG	4 cut(s)	683, 1215, 1238, 1305
PspN4I	GGNNCC	3 cut(s)	78, 416, 1244
PspPI	GGNCC	2 cut(s)	52, 344
PspXI	VCTCGAGB	1 cut(s)	917
PsuI	RGATCY	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	784
RsaI	GTAC	2 cut(s)	482, 729
RsaNI	GTAC	2 cut(s)	481, 728
SacI	GAGCTC	1 cut(s)	918
SaqAI	TTAA	3 cut(s)	666, 950, 1232
SatI	GCNGC	6 cut(s)	347, 641, 776, 827, 839, 884
Sau3AI	GATC	8 cut(s)	26, 207, 281, 421, 547, 718, 1012, 1331
Sau96I	GGNCC	2 cut(s)	52, 344
ScaI	AGTACT	1 cut(s)	482
SchI	GAGTC	1 cut(s)	1196
ScrFI	CCNGG	5 cut(s)	389, 685, 1217, 1240, 1307
SduI	GDGCHC	3 cut(s)	870, 918, 1128
SexAI	ACCWGGT	1 cut(s)	1305
SfaNI	GCATC	4 cut(s)	621, 682, 787, 825
Sfr274I	CTCGAG	1 cut(s)	917
SfuI	TTCGAA	1 cut(s)	795
SlaI	CTCGAG	1 cut(s)	917
SmlI	CTYRAG	2 cut(s)	917, 999
SmoI	CTYRAG	2 cut(s)	917, 999
SsiI	CCGC	2 cut(s)	347, 883
SspMI	CTAG	1 cut(s)	1160
SstI	GAGCTC	1 cut(s)	918
StyD4I	CCNGG	5 cut(s)	387, 683, 1215, 1238, 1305
StyI	CCWWGG	3 cut(s)	321, 961, 1071
TaiI	ACGT	1 cut(s)	1212
TaqI	TCGA	4 cut(s)	702, 795, 918, 1015
TatI	WGTACW	2 cut(s)	480, 727
TauI	GCSGC	2 cut(s)	349, 886
TfiI	GAWTC	4 cut(s)	185, 534, 748, 805
Tru1I	TTAA	3 cut(s)	666, 950, 1232
Tru9I	TTAA	3 cut(s)	666, 950, 1232
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	4 cut(s)	640, 775, 826, 838
TspDTI	ATGAA	9 cut(s)	33, 99, 143, 282, 424, 588, 920, 1179, 1200
TspRI	CASTG	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	1222
VneI	GTGCAC	1 cut(s)	1124
XapI	RAATTY	1 cut(s)	1168
XhoI	CTCGAG	1 cut(s)	917
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	1 cut(s)	1160
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.