Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010515

Physical Location & Seq

Genomic Coordinates Forward (+)

3018117 .. 3018878

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0038700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAGGAATAGCACCTTCAAACAGGAGGACTCTGACTCTGACTCTGATTCACTCCTACACAAAGTTTGGAAACACTACAGATCCAACAAGTTGGCCGACATGGTTGATCCTTGCTTGAGAGATCATGAGTTTCCAGCAAAAGAGGTATCAAATGTTCTTCAAATTGGACTTCTGTGCACACAGGCCTCAGTTACTTTGAGACCATCTATGGCTGAAGTAGTTATAATGCTAACAGCCAACAAAGAGAGAGACATTCCTATTCCAAACCAACCTCCCTTTCTAAATGCCACGACGCTAGAGCAAGCCAGCTCCATTAGGTCTAATAGCGAAAACAGCTTCGTCTCAAATACTTTAACAAAAGTTGAGACGTCCTCTCGTTGGAGTCTTCCAGCACCCCTAGTTTGGATAATAAGGGTCATGTATCAACTTACTCTTGCAGAAGTAGCAGGTTTCCCACGTCTTAAACATGTTAAGAAAAGCATGCTTGGAGGTCAGGTCAGTATGCAGAAGTGCAGAACTAGAGAGATTTTCGGAATTCAGAACCGGAAGATATTCAGATTTTTGGTTCTCTGTCTTGTTCATACACTTGTCTGTCTATATGGAAGCGCACGCATCACTTCAGTTTCATATAGGCGACAGAGCGCTGTCAGAGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

219

Amino Acids

24.92

Weight (kDa)

9.64

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07800
malus_domestica	MD02G1082000.v1.1 MD12G1184500.v1.1 MD15G1209400.v1.1
prunus_persica	Prupe.7G206900_v2.0.a1
pyrus_communis	pycom02g06490 pycom15g18570
rosa_chinensis	RchiOBHm_Chr2g0093671
rosa_laevigata	RLG00000016427
rosa_roxburghii	Rroxscaffold_2G00147910
rosa_rugosa	Rorug02G0038700 Rorug05G0356600
rosa_samantha	Rh2AG085100 Rh2BG085600 Rh2CG087900 Rh2DG083400 Rh3AG094700 Rh3CG099000 Rh3DG098400
rosa_wichuraiana	Rw0G013900 Rw3G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AatII	GACGTC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	437
AclWI	GGATC	2 cut(s)	75, 101
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	2 cut(s)	234, 603
AcyI	GRCGYC	1 cut(s)	368
AfeI	AGCGCT	1 cut(s)	643
AfiI	CCNNNNNNNGG	2 cut(s)	378, 402
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	2 cut(s)	19, 161
AjiI	CACGTC	1 cut(s)	458
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	2 cut(s)	309, 336
AluI	AGCT	2 cut(s)	309, 336
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	4 cut(s)	193, 243, 346, 359
Alw44I	GTGCAC	1 cut(s)	175
AlwI	GGATC	2 cut(s)	75, 101
Aor51HI	AGCGCT	1 cut(s)	643
AoxI	GGCC	2 cut(s)	93, 183
ApaLI	GTGCAC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	551
AspLEI	GCGC	2 cut(s)	608, 644
BaeGI	GKGCMC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	179
BccI	CCATC	1 cut(s)	211
BcoDI	GTCTC	4 cut(s)	193, 243, 346, 359
BfaI	CTAG	3 cut(s)	296, 398, 519
BfmI	CTRYAG	1 cut(s)	76
BfoI	RGCGCY	1 cut(s)	645
BfuAI	ACCTGC	1 cut(s)	437
BmgBI	CACGTC	1 cut(s)	458
BmsI	GCATC	1 cut(s)	621
BpiI	GAAGAC	1 cut(s)	377
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpuEI	CTTGAG	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 402
BseLI	CCNNNNNNNGG	2 cut(s)	378, 402
BseMII	CTCAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	532
BshFI	GGCC	2 cut(s)	95, 185
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	378, 402
BsmAI	GTCTC	4 cut(s)	193, 243, 346, 359
BsmBI	CGTCTC	2 cut(s)	346, 359
BsnI	GGCC	2 cut(s)	95, 185
Bso31I	GGTCTC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	3 cut(s)	80, 106, 121
BspANI	GGCC	2 cut(s)	95, 185
BspCNI	CTCAG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	437
BspPI	GGATC	2 cut(s)	75, 101
BspTNI	GGTCTC	1 cut(s)	193
BssMI	GATC	3 cut(s)	80, 106, 121
BssNI	GRCGYC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	368
BstC8I	GCNNGC	4 cut(s)	303, 307, 482, 610
BstDEI	CTNAG	1 cut(s)	187
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	2 cut(s)	608, 644
BstKTI	GATC	3 cut(s)	83, 109, 124
BstMAI	GTCTC	4 cut(s)	193, 243, 346, 359
BstMBI	GATC	3 cut(s)	80, 106, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 443
BstNSI	RCATGY	2 cut(s)	470, 484
BstSFI	CTRYAG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	95, 185
BtrI	CACGTC	1 cut(s)	458
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	4 cut(s)	303, 307, 482, 610
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	2 cut(s)	608, 644
CseI	GACGC	1 cut(s)	301
CviAII	CATG	5 cut(s)	100, 125, 418, 467, 481
CviJI	RGCY	7 cut(s)	95, 185, 212, 236, 305, 309, 336
CviKI_1	RGCY	7 cut(s)	95, 185, 212, 236, 305, 309, 336
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	3 cut(s)	82, 108, 123
DpnII	GATC	3 cut(s)	80, 106, 121
EaeI	YGGCCR	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	193
Eco47III	AGCGCT	1 cut(s)	643
Eco57I	CTGAAG	2 cut(s)	234, 603
EcoRI	GAATTC	1 cut(s)	534
Esp3I	CGTCTC	2 cut(s)	346, 359
FaeI	CATG	5 cut(s)	103, 128, 421, 470, 484
FatI	CATG	5 cut(s)	99, 124, 417, 466, 480
FspBI	CTAG	3 cut(s)	296, 398, 519
GlaI	GCGC	2 cut(s)	607, 643
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	95, 185
HapII	CCGG	1 cut(s)	544
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	2 cut(s)	608, 644
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	5 cut(s)	103, 128, 421, 470, 484
Hin6I	GCGC	2 cut(s)	606, 642
HinP1I	GCGC	2 cut(s)	606, 642
HinfI	GANTC	5 cut(s)	29, 35, 41, 47, 382
HpaII	CCGG	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	7 cut(s)	34, 40, 46, 533, 540, 557, 650
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	368, 457
HpyCH4V	TGCA	4 cut(s)	177, 437, 505, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 443
HpyF3I	CTNAG	1 cut(s)	187
HpySE526I	ACGT	2 cut(s)	368, 457
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	5 cut(s)	103, 128, 421, 470, 484
HspAI	GCGC	2 cut(s)	606, 642
Kzo9I	GATC	3 cut(s)	80, 106, 121
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	8 cut(s)	8, 147, 167, 319, 402, 432, 479, 557
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	3 cut(s)	296, 398, 519
MaeII	ACGT	2 cut(s)	368, 457
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	82, 108, 123
MboI	GATC	3 cut(s)	80, 106, 121
MboII	GAAGA	3 cut(s)	149, 377, 559
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	2 cut(s)	162, 534
MlyI	GAGTC	4 cut(s)	23, 29, 35, 391
MmeI	TCCRAC	2 cut(s)	108, 359
MnlI	CCTC	6 cut(s)	19, 136, 196, 282, 382, 482
MroXI	GAANNNNTTC	1 cut(s)	551
MseI	TTAA	3 cut(s)	353, 462, 471
MspI	CCGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	2 cut(s)	333, 443
NdeII	GATC	3 cut(s)	80, 106, 121
NlaIII	CATG	5 cut(s)	103, 128, 421, 470, 484
NspI	RCATGY	2 cut(s)	470, 484
PaeI	GCATGC	1 cut(s)	484
PagI	TCATGA	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	185
PciI	ACATGT	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	551
PfeI	GAWTC	1 cut(s)	47
PleI	GAGTC	4 cut(s)	23, 29, 35, 390
PpsI	GAGTC	4 cut(s)	23, 29, 35, 390
PscI	ACATGT	1 cut(s)	466
PsiI	TTATAA	1 cut(s)	224
PsrI	GAACNNNNNNTAC	2 cut(s)	138, 170
PsuI	RGATCY	1 cut(s)	80
SaqAI	TTAA	3 cut(s)	353, 462, 471
Sau3AI	GATC	3 cut(s)	80, 106, 121
SchI	GAGTC	4 cut(s)	23, 29, 35, 391
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
SphI	GCATGC	1 cut(s)	484
Sse9I	AATT	2 cut(s)	162, 534
SseBI	AGGCCT	1 cut(s)	185
SspMI	CTAG	3 cut(s)	296, 398, 519
StuI	AGGCCT	1 cut(s)	185
TaiI	ACGT	2 cut(s)	371, 460
TasI	AATT	2 cut(s)	162, 534
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	3 cut(s)	353, 462, 471
Tru9I	TTAA	3 cut(s)	353, 462, 471
TspDTI	ATGAA	2 cut(s)	569, 615
VneI	GTGCAC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	534
XceI	RCATGY	2 cut(s)	470, 484
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	3 cut(s)	296, 398, 519
ZraI	GACGTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.