Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010515

Physical Location & Seq

Genomic Coordinates Forward (+)

26472028 .. 26472420

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1184500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGATCTGCCTAAACCCATGGAGGGTTTGCGCGAGGCAGGCCCACCACCGTTCTTAAACAAGACATTTCAAATGGTAGACGACCCAGAAACCGATTCGATCATTTCGTGGAGTGATGCTCGGCAGAGCTTCATTGTTTGGGACTTGTACGAATTCTCCAGGACTCTGCTGCCCAAACACTTCAAGCACAACAATTTCTCAAGCTTCATTCGCCAGCTCAACACTTATGGGTTCAGAAAGGTTGATCAGGACAGGTGGGAGTTTGCAAATGAAAGGTTTCAGGAGGGAAGAGGCAGGTCCAAGATGGAAGATAGGTTGAGGAAGAAAAGGAACAAGATCTTGCAGACAAAGTCTGGTTCAGGGCTGCCCATGAATGTGACATTCAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

131

Amino Acids

15.45

Weight (kDa)

9.79

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	18 - 98	2.2e-27	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07800
malus_domestica	MD02G1082000.v1.1 MD12G1184500.v1.1 MD15G1209400.v1.1
prunus_persica	Prupe.7G206900_v2.0.a1
pyrus_communis	pycom02g06490 pycom15g18570
rosa_chinensis	RchiOBHm_Chr2g0093671
rosa_laevigata	RLG00000016427
rosa_roxburghii	Rroxscaffold_2G00147910
rosa_rugosa	Rorug02G0038700 Rorug05G0356600
rosa_samantha	Rh2AG085100 Rh2BG085600 Rh2CG087900 Rh2DG083400 Rh3AG094700 Rh3CG099000 Rh3DG098400
rosa_wichuraiana	Rw0G013900 Rw3G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	33
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	71, 184, 385
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	3 cut(s)	129, 204, 217
AluI	AGCT	3 cut(s)	129, 204, 217
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	169, 364
ApoI	RAATTY	1 cut(s)	152
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	41, 297
AvaII	GGWCC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	156, 351
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	160
BclI	TGATCA	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	285
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	2 cut(s)	170, 365
BlsI	GCNGC	2 cut(s)	171, 366
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	41, 297
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	156, 351
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	4, 99, 244, 336
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	33
BspMI	ACCTGC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	4 cut(s)	4, 99, 244, 336
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	40, 215
BstDSI	CCRYGG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	4 cut(s)	7, 102, 247, 339
BstMBI	GATC	4 cut(s)	4, 99, 244, 336
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 210
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	156, 351
BstX2I	RGATCY	2 cut(s)	4, 336
BstYI	RGATCY	2 cut(s)	4, 336
BsuRI	GGCC	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	18
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	40, 215
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	2 cut(s)	41, 297
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	2 cut(s)	19, 370
CviJI	RGCY	5 cut(s)	42, 129, 204, 217, 364
CviKI_1	RGCY	5 cut(s)	42, 129, 204, 217, 364
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	4 cut(s)	6, 101, 246, 338
DpnII	GATC	4 cut(s)	4, 99, 244, 336
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	2 cut(s)	22, 373
FaiI	YATR	3 cut(s)	20, 228, 371
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	18, 369
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	170, 365
Fsp4HI	GCNGC	2 cut(s)	170, 365
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	170, 365
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	42
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	22, 373
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	2 cut(s)	95, 163
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	2 cut(s)	248, 281
Hpy8I	GTNNAC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	266, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 210
Hsp92II	CATG	2 cut(s)	22, 373
HspAI	GCGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	4, 99, 244, 336
Lsp1109I	GCAGC	2 cut(s)	156, 351
LweI	GCATC	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	4 cut(s)	6, 101, 246, 338
MboI	GATC	4 cut(s)	4, 99, 244, 336
MboII	GAAGA	3 cut(s)	300, 320, 334
MflI	RGATCY	2 cut(s)	4, 336
MluCI	AATT	2 cut(s)	152, 193
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	5 cut(s)	16, 28, 277, 284, 312
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	39, 210
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	4 cut(s)	4, 99, 244, 336
NlaIII	CATG	2 cut(s)	22, 373
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	95
PflFI	GACNNNGTC	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	171, 366
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	41, 297
PsuI	RGATCY	2 cut(s)	4, 336
PsyI	GACNNNGTC	1 cut(s)	349
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	2 cut(s)	170, 365
Sau3AI	GATC	4 cut(s)	4, 99, 244, 336
Sau96I	GGNCC	2 cut(s)	41, 297
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	8 cut(s)	131, 206, 219, 243, 257, 278, 299, 317
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	152, 193
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	98
TasI	AATT	2 cut(s)	152, 193
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	169, 364
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	121, 196, 285, 386
Tth111I	GACNNNGTC	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	297
XapI	RAATTY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.