Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010515

Physical Location & Seq

Genomic Coordinates Forward (+)

4516995 .. 4517537

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCTCTTTTTCCTCACCAAAACCGCTGTGAATCCCATCTCTGTGGAGCAGCTAATGCAGAAGAGAATGATAAAGAGAGAGCTGGACGGTGGTGTTCTAGGCAAGAGAAGGAGTTTGCCTCCGGCCCAAGGCATTGAAAGCTTTGATGAGTGGATAAATGACAGCCTCAGTTTTGATTGTAGAAATCGAGTTCAGGAAGAACCGGTACCTATGCAAACTGCGCTTGCTGAACAAATCTCAGAGGCAATCGCTTCCCAACGAAATGGAACCTCGTTATCATCTCCCATGGTTGATAAATCATGTAATGCAGGTCAAGTTCTATATCCCCGTTTGATGGCCGGAAAAAGCAGCTCGGAGGATATGCCCTCTGCTTATGATGACATGTCCGATAAATTTCTGGAAGAAAATATAGTTTCCAATGATGAATGTGCACTGAATGACTCCAGTTTTTACCAAGAATTGGAGGATTTGATTGCCAGGCCGGGCGATTGGACTGCATATGTGAGTAACTCCTTGGTGGAGCAAGCTGGTTGCATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

181

Amino Acids

19.96

Weight (kDa)

4.4

Isoelectric Point (pI)

65.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07800
malus_domestica	MD02G1082000.v1.1 MD12G1184500.v1.1 MD15G1209400.v1.1
prunus_persica	Prupe.7G206900_v2.0.a1
pyrus_communis	pycom02g06490 pycom15g18570
rosa_chinensis	RchiOBHm_Chr2g0093671
rosa_laevigata	RLG00000016427
rosa_roxburghii	Rroxscaffold_2G00147910
rosa_rugosa	Rorug02G0038700 Rorug05G0356600
rosa_samantha	Rh2AG085100 Rh2BG085600 Rh2CG087900 Rh2DG083400 Rh3AG094700 Rh3CG099000 Rh3DG098400
rosa_wichuraiana	Rw0G013900 Rw3G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
Acc65I	GGTACC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	460
AciI	CCGC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	392
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	3 cut(s)	128, 334, 460
AflIII	ACRYGT	1 cut(s)	381
AgeI	ACCGGT	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	5 cut(s)	52, 82, 141, 351, 527
AluI	AGCT	5 cut(s)	52, 82, 141, 351, 527
Alw21I	GWGCWC	1 cut(s)	433
Alw44I	GTGCAC	1 cut(s)	429
AoxI	GGCC	3 cut(s)	123, 336, 479
ApaLI	GTGCAC	1 cut(s)	429
ApeKI	GCWGC	2 cut(s)	49, 348
ApoI	RAATTY	1 cut(s)	392
AsiGI	ACCGGT	1 cut(s)	202
Asp718I	GGTACC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	205
BarI	GAAGNNNNNNTAC	2 cut(s)	189, 221
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	2 cut(s)	61, 360
BccI	CCATC	2 cut(s)	44, 328
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	483
BfaI	CTAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	2 cut(s)	50, 349
BlsI	GCNGC	2 cut(s)	51, 350
Bme1390I	CCNGG	2 cut(s)	478, 483
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	207, 268
BmrFI	CCNGG	2 cut(s)	478, 483
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	1 cut(s)	427
BpuMI	CCSGG	1 cut(s)	483
BsaJI	CCNNGG	3 cut(s)	127, 285, 513
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 334, 460
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	3 cut(s)	127, 285, 513
BseLI	CCNNNNNNNGG	3 cut(s)	128, 334, 460
BseMII	CTCAG	2 cut(s)	181, 252
BseNI	ACTGG	1 cut(s)	444
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	61, 360
BshFI	GGCC	3 cut(s)	125, 338, 481
BshNI	GGYRCC	1 cut(s)	205
BshTI	ACCGGT	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	4 cut(s)	122, 203, 339, 482
BslI	CCNNNNNNNGG	3 cut(s)	128, 334, 460
BsnI	GGCC	3 cut(s)	125, 338, 481
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	3 cut(s)	125, 338, 481
BspCNI	CTCAG	2 cut(s)	180, 251
BspLI	GGNNCC	2 cut(s)	207, 268
BspMI	ACCTGC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	444
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	3 cut(s)	127, 285, 513
BssT1I	CCWWGG	3 cut(s)	127, 285, 513
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstC8I	GCNNGC	2 cut(s)	225, 525
BstDEI	CTNAG	2 cut(s)	167, 238
BstDSI	CCRYGG	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 138, 220
BstNI	CCWGG	1 cut(s)	478
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	2 cut(s)	476, 481
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	2 cut(s)	61, 360
BstXI	CCANNNNNNTGG	2 cut(s)	43, 263
BsuRI	GGCC	3 cut(s)	125, 338, 481
BtgI	CCRYGG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	431
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	225, 525
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	206
CspAI	ACCGGT	1 cut(s)	202
CviAII	CATG	3 cut(s)	286, 300, 382
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	2 cut(s)	167, 238
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	3 cut(s)	127, 285, 513
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	3 cut(s)	127, 285, 513
ErhI	CCWWGG	3 cut(s)	127, 285, 513
FaeI	CATG	3 cut(s)	289, 303, 385
FatI	CATG	3 cut(s)	285, 299, 381
FauNDI	CATATG	1 cut(s)	499
Fnu4HI	GCNGC	2 cut(s)	50, 349
Fsp4HI	GCNGC	2 cut(s)	50, 349
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	2 cut(s)	50, 349
GsuI	CTGGAG	1 cut(s)	427
HaeIII	GGCC	3 cut(s)	125, 338, 481
HapII	CCGG	4 cut(s)	122, 203, 339, 482
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	3 cut(s)	289, 303, 385
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	2 cut(s)	31, 440
HpaII	CCGG	4 cut(s)	122, 203, 339, 482
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	3 cut(s)	241, 355, 388
Hpy188III	TCNNGA	2 cut(s)	194, 398
Hpy8I	GTNNAC	1 cut(s)	431
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	6 cut(s)	58, 214, 308, 431, 497, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 138, 220
HpyF3I	CTNAG	2 cut(s)	167, 238
Hsp92II	CATG	3 cut(s)	289, 303, 385
HspAI	GCGC	1 cut(s)	221
KpnI	GGTACC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	46, 520
Lsp1109I	GCAGC	2 cut(s)	61, 360
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	506
MboII	GAAGA	3 cut(s)	73, 209, 413
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	2 cut(s)	392, 458
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	8 cut(s)	23, 129, 176, 235, 280, 349, 376, 457
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	4 cut(s)	122, 203, 339, 482
MspR9I	CCNGG	2 cut(s)	478, 483
MvaI	CCWGG	1 cut(s)	478
MwoI	GCNNNNNNNGC	3 cut(s)	55, 138, 220
NciI	CCSGG	1 cut(s)	483
NcoI	CCATGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	499
NlaIII	CATG	3 cut(s)	289, 303, 385
NlaIV	GGNNCC	2 cut(s)	207, 268
NspI	RCATGY	1 cut(s)	385
PciI	ACATGT	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	460
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	51, 350
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
PscI	ACATGT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	2 cut(s)	207, 268
PspPI	GGNCC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	41
SatI	GCNGC	2 cut(s)	50, 349
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	2 cut(s)	478, 483
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	8 cut(s)	54, 84, 143, 211, 272, 313, 353, 529
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	392, 458
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	476, 481
StyI	CCWWGG	3 cut(s)	127, 285, 513
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	187
TasI	AATT	2 cut(s)	392, 458
TfiI	GAWTC	1 cut(s)	31
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	2 cut(s)	49, 348
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	438
Van91I	CCANNNNNTGG	1 cut(s)	460
VneI	GTGCAC	1 cut(s)	429
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.