Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010515

Physical Location & Seq

Genomic Coordinates Forward (+)

7825851 .. 7828163

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG098400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTGGTTTCTTACGGTGGTTATGGTGGTGGTGGATCTTGTTCGCCATTTTCATCGACGGCCCAGATTACACAACCCAAAGAGGCTTCAGAAGAACGTGCGAAAGTCAAGGAAGAAGAAGAGGCAGTGAATTGTAAAGGTGGTAGTTTTGATGGGTCATCTGCTTCTTCATCTTCCTCCACCGCTTCACCAAAGCTCACAGAGGAAGTGGAGGAACCAAACAAGGCCGTGGAATTAGCGAAACCAGAGGTGGTCCAAATCAAAGCAGAGAGCATAGAGTTTGTGGTGGATGATTATGATGGTAGAGATTGCTTCAATTGTGGTAGTGGTAGTAATATTAATGGATCATATTCTTCTTCTTCTTCAAAGGTGTTGCCCAAGCCCATGGAGTGTTTGCTCGAAACAGGGCCGCCACCTTTTCTCAACAAGACATTTCAGATGGTGGACGACCCGGAAACCGACCTGATTGTGTCGTGGAGCGAAGCTCGCCAAAGCTTCATTGTTTGGGACTGCCATGAGTTCTCCAAGACCCTATTGCCTAAGTACTTCAAGCACAGCAATTTCTCAAGCTTCATTCGCCAGCTCAACACTTATGGATTCAAGAAGGTTGATCCGGATAGGTGGGAGTTTGCAAATGAAGGGTTTCAAGGAGGGAAGAAGCACTTGCTGAAAAGCATAAAGAGAAGAAGCAGATACAACAAGCAGCCACAAGGAAGCAATGTCTCAGCTAATTCAACCAAAAAAAGCCGGGTTAGAAGTCCAACTCGAAACGCTGAAGAAGGATCAAGACGTACTGAAACTCGAAATCTTGAATCTCAAACAGCAACAGAAGTACTCGCAGCATCAGCTGACTGCTGTCGAAGAGAGGATTCGAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

293

Amino Acids

32.38

Weight (kDa)

6.39

Isoelectric Point (pI)

65.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	140 - 229	1e-29	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07800
malus_domestica	MD02G1082000.v1.1 MD12G1184500.v1.1 MD15G1209400.v1.1
prunus_persica	Prupe.7G206900_v2.0.a1
pyrus_communis	pycom02g06490 pycom15g18570
rosa_chinensis	RchiOBHm_Chr2g0093671
rosa_laevigata	RLG00000016427
rosa_roxburghii	Rroxscaffold_2G00147910
rosa_rugosa	Rorug02G0038700 Rorug05G0356600
rosa_samantha	Rh2AG085100 Rh2BG085600 Rh2CG087900 Rh2DG083400 Rh3AG094700 Rh3CG099000 Rh3DG098400
rosa_wichuraiana	Rw0G013900 Rw3G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	2 cut(s)	183, 410
AclWI	GGATC	4 cut(s)	43, 352, 605, 790
AcuI	CTGAAG	2 cut(s)	72, 795
AfaI	GTAC	3 cut(s)	545, 793, 834
AgsI	TTSAA	7 cut(s)	316, 366, 550, 601, 647, 735, 812
AloI	GAACNNNNNNTCC	1 cut(s)	860
AluBI	AGCT	7 cut(s)	196, 485, 495, 570, 583, 728, 848
AluI	AGCT	7 cut(s)	196, 485, 495, 570, 583, 728, 848
Alw26I	GTCTC	1 cut(s)	727
AlwI	GGATC	4 cut(s)	43, 352, 605, 790
Aor13HI	TCCGGA	1 cut(s)	613
AoxI	GGCC	3 cut(s)	60, 225, 407
ApeKI	GCWGC	2 cut(s)	703, 839
AseI	ATTAAT	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	642
AspS9I	GGNCC	3 cut(s)	61, 253, 407
AsuC2I	CCSGG	2 cut(s)	452, 749
AsuHPI	GGTGA	1 cut(s)	180
AsuII	TTCGAA	1 cut(s)	872
AvaII	GGWCC	1 cut(s)	253
BbvI	GCAGC	2 cut(s)	715, 851
BccI	CCATC	3 cut(s)	146, 293, 433
BceAI	ACGGC	2 cut(s)	75, 212
BcnI	CCSGG	2 cut(s)	452, 749
BcoDI	GTCTC	1 cut(s)	727
BisI	GCNGC	3 cut(s)	410, 704, 840
BlsI	GCNGC	3 cut(s)	411, 705, 841
BmcAI	AGTACT	2 cut(s)	545, 834
Bme1390I	CCNGG	2 cut(s)	452, 749
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	3 cut(s)	61, 253, 407
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	2 cut(s)	452, 749
BmsI	GCATC	1 cut(s)	851
BoxI	GACNNNNGTC	1 cut(s)	855
BplI	GAGNNNNNCTC	2 cut(s)	469, 501
Bpu14I	TTCGAA	1 cut(s)	872
BpuEI	CTTGAG	1 cut(s)	550
BpuMI	CCSGG	2 cut(s)	452, 749
BsaJI	CCNNGG	2 cut(s)	228, 384
BsaWI	WCCGGW	1 cut(s)	613
Bse3DI	GCAATG	1 cut(s)	724
BseAI	TCCGGA	1 cut(s)	613
BseDI	CCNNGG	2 cut(s)	228, 384
BseGI	GGATG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	1 cut(s)	738
BseXI	GCAGC	2 cut(s)	715, 851
BshFI	GGCC	3 cut(s)	62, 227, 409
BsiSI	CCGG	3 cut(s)	452, 614, 748
BslFI	GGGAC	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	727
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	62, 227, 409
Bsp119I	TTCGAA	1 cut(s)	872
Bsp13I	TCCGGA	1 cut(s)	613
Bsp143I	GATC	4 cut(s)	35, 344, 610, 782
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	2 cut(s)	183, 410
BspANI	GGCC	3 cut(s)	62, 227, 409
BspCNI	CTCAG	1 cut(s)	737
BspEI	TCCGGA	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	4 cut(s)	43, 352, 605, 790
BspT104I	TTCGAA	1 cut(s)	872
BsrDI	GCAATG	1 cut(s)	724
BssECI	CCNNGG	2 cut(s)	228, 384
BssMI	GATC	4 cut(s)	35, 344, 610, 782
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	114, 856
BstBI	TTCGAA	1 cut(s)	872
BstC8I	GCNNGC	2 cut(s)	487, 581
BstDEI	CTNAG	2 cut(s)	540, 724
BstDSI	CCRYGG	2 cut(s)	228, 384
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	4 cut(s)	38, 347, 613, 785
BstMAI	GTCTC	1 cut(s)	727
BstMBI	GATC	4 cut(s)	35, 344, 610, 782
BstMWI	GCNNNNNNNGC	3 cut(s)	486, 576, 845
BstPAI	GACNNNNGTC	1 cut(s)	855
BstSCI	CCNGG	2 cut(s)	450, 747
BstV1I	GCAGC	2 cut(s)	715, 851
BstX2I	RGATCY	1 cut(s)	35
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	62, 227, 409
BtgI	CCRYGG	2 cut(s)	228, 384
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	487, 581
Cfr13I	GGNCC	3 cut(s)	61, 253, 407
Csp6I	GTAC	3 cut(s)	544, 792, 833
CviAII	CATG	2 cut(s)	385, 515
CviQI	GTAC	3 cut(s)	544, 792, 833
DdeI	CTNAG	2 cut(s)	540, 724
DpnI	GATC	4 cut(s)	37, 346, 612, 784
DpnII	GATC	4 cut(s)	35, 344, 610, 782
Eam1104I	CTCTTC	2 cut(s)	114, 856
EarI	CTCTTC	2 cut(s)	114, 856
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	72, 795
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	388, 518
FaiI	YATR	8 cut(s)	24, 275, 297, 349, 386, 516, 594, 677
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	2 cut(s)	384, 514
Fnu4HI	GCNGC	3 cut(s)	410, 704, 840
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	410, 704, 840
GluI	GCNGC	3 cut(s)	410, 704, 840
HaeIII	GGCC	3 cut(s)	62, 227, 409
HapII	CCGG	3 cut(s)	452, 614, 748
Hin1II	CATG	2 cut(s)	388, 518
HindIII	AAGCTT	2 cut(s)	493, 568
HinfI	GANTC	3 cut(s)	597, 812, 869
HpaII	CCGG	3 cut(s)	452, 614, 748
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	3 cut(s)	91, 438, 881
Hpy188III	TCNNGA	4 cut(s)	601, 614, 786, 809
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	598, 632, 773
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	2 cut(s)	97, 790
HpyCH4V	TGCA	1 cut(s)	632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	486, 576, 845
HpyF3I	CTNAG	2 cut(s)	540, 724
HpySE526I	ACGT	2 cut(s)	97, 790
Hsp92II	CATG	2 cut(s)	388, 518
Kpn2I	TCCGGA	1 cut(s)	613
Kzo9I	GATC	4 cut(s)	35, 344, 610, 782
LmnI	GCTCC	1 cut(s)	477
LpnPI	CCDG	8 cut(s)	77, 258, 390, 465, 476, 593, 627, 761
Lsp1109I	GCAGC	2 cut(s)	715, 851
LweI	GCATC	1 cut(s)	851
MaeII	ACGT	2 cut(s)	97, 790
MalI	GATC	4 cut(s)	37, 346, 612, 784
MboI	GATC	4 cut(s)	35, 344, 610, 782
MfeI	CAATTG	1 cut(s)	316
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	5 cut(s)	130, 233, 316, 559, 730
MmeI	TCCRAC	1 cut(s)	785
MnlI	CCTC	8 cut(s)	76, 115, 187, 196, 205, 241, 644, 859
MroI	TCCGGA	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	848
MspI	CCGG	3 cut(s)	452, 614, 748
MspR9I	CCNGG	2 cut(s)	452, 749
MunI	CAATTG	1 cut(s)	316
MwoI	GCNNNNNNNGC	3 cut(s)	486, 576, 845
NciI	CCSGG	2 cut(s)	452, 749
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	4 cut(s)	35, 344, 610, 782
NlaIII	CATG	2 cut(s)	388, 518
NlaIV	GGNNCC	1 cut(s)	216
NspV	TTCGAA	1 cut(s)	872
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	3 cut(s)	597, 812, 869
PkrI	GCNGC	3 cut(s)	411, 705, 841
PshAI	GACNNNNGTC	1 cut(s)	855
PshBI	ATTAAT	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	3 cut(s)	61, 253, 407
PsuI	RGATCY	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	3 cut(s)	545, 793, 834
RsaNI	GTAC	3 cut(s)	544, 792, 833
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	410, 704, 840
Sau3AI	GATC	4 cut(s)	35, 344, 610, 782
Sau96I	GGNCC	3 cut(s)	61, 253, 407
ScaI	AGTACT	2 cut(s)	545, 834
ScrFI	CCNGG	2 cut(s)	452, 749
SfaNI	GCATC	1 cut(s)	851
SfuI	TTCGAA	1 cut(s)	872
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	5 cut(s)	130, 233, 316, 559, 730
SsiI	CCGC	2 cut(s)	183, 410
SspI	AATATT	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	450, 747
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	2 cut(s)	100, 793
TaqI	TCGA	6 cut(s)	56, 399, 766, 802, 859, 872
TasI	AATT	5 cut(s)	130, 233, 316, 559, 730
TatI	WGTACW	2 cut(s)	543, 832
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	3 cut(s)	597, 812, 869
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	2 cut(s)	703, 839
TspDTI	ATGAA	5 cut(s)	42, 159, 487, 562, 651
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	253
VspI	ATTAAT	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	642
ZrmI	AGTACT	2 cut(s)	545, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.