Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010515

Physical Location & Seq

Genomic Coordinates Forward (+)

7582348 .. 7584622

Gene Structure 2275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGTGGTTTCTTACGGTGGTTATGGTGGTGGTGGATCTTGTTCGCCATTTTCATCGACGGCCCAGATTACACAACCCAAAGAGGCTTCAGAAGAACCTGCGAAAGTCAAGGAAGAAGAAGAGGCAGTGAATTGTAAAGGTGGTAGTTTTGATGGGTCATCTGCTTCTTCATCTTCCTCCACCGCTTCACCAAAGCTCACAGAGGAAGTGGAGGAACCAAACAAGGCCGTGGAATTAGCGAAACCAGAGGTGGTCCAAATCAAAGCAGAGAGCATAGAGTTTGTGGTGGATGATTATGATGGTAGAGATTGCTTCAATTGTGGTAGTGGTAGTAATATTAATGTATCATATTCTTCTTCTTCTTCAAAGGTGTTGCCCAAGCCCATGGAGTGTTTGCTCGAAACAGGGCCGCCACCTTTTCTCAACAAGACATTTCAGATGGTGGACGACCCGGAAACCGACCTGATTGTGTCGTGGAGCGAAGCTCGCCAAAGCTTCATTGTTTGGGACTGCCATGAGTTCTCCAAGACCCTATTGCCTAAGTACTTCAAGCACAGCAATTTCTCAAGCTTCATTCGCCAGCTCAACACTTATGGATTCAAGAAGGTTGATCCGGATAGGTGGGAGTTTGCAAATGAAGGGTTTCAAGGAGGGAAGAAGCACTTGCTGAAAAGCATAAAGAGAAGAAGCAGATACAACAAGCAGCCACAAGGAAGCAATGTCTCAGCTAATTCAACCAAAAAAGCCGGGTTAGAAGTCCAACTCGAAACGCTGAAGAAGGATCAAGACGTACTGAAACTCGAAATCTTGAATCTCAAACAGCAACAGAAGTACTCGCAGCATCAGCTGACTGCTGTCGAAGAGAGGATTCGAAGTTCTGAGTGTAAGCAGCAGAGGATGCTGCTTTTCCTCACCAAGACAACAAGGAAACCCAATTTTGTGGAGCAGCTAATGCAGAAAAGAGCGTTGAAGAGAGAGCTCGAGGGGGGCAATTTAGGAAAGAGAAGGAGGTTACTTTCAGCCCAAGGTTTTGAAGATTTTGGTGATTGTGGAGACCAAGTTCAAGTCTTGGCTGGGCAATTGCCGGAAGTAGTGGTTCCTCAACAGCAAGAAACCCCATTGCCAGCTTCCGTGGTTGATAAATCATGTAGTTCGCTTCAAAATAATAAGCCACAGGCAGAAGTGCACTTTGTTTACCATGATATGTCCGAGAAATTGCTCCAAAGAATTCAGTTTTTGATGATGAATATGCAGTCAATGACTCAAACTTTTACCAGGAATTGGAGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

430

Amino Acids

48.42

Weight (kDa)

7.96

Isoelectric Point (pI)

59.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	140 - 229	2e-29	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07800
malus_domestica	MD02G1082000.v1.1 MD12G1184500.v1.1 MD15G1209400.v1.1
prunus_persica	Prupe.7G206900_v2.0.a1
pyrus_communis	pycom02g06490 pycom15g18570
rosa_chinensis	RchiOBHm_Chr2g0093671
rosa_laevigata	RLG00000016427
rosa_roxburghii	Rroxscaffold_2G00147910
rosa_rugosa	Rorug02G0038700 Rorug05G0356600
rosa_samantha	Rh2AG085100 Rh2BG085600 Rh2CG087900 Rh2DG083400 Rh3AG094700 Rh3CG099000 Rh3DG098400
rosa_wichuraiana	Rw0G013900 Rw3G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	1281
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	2 cut(s)	183, 410
AclWI	GGATC	3 cut(s)	43, 605, 789
AcsI	RAATTY	1 cut(s)	1227
AcuI	CTGAAG	2 cut(s)	72, 794
AfaI	GTAC	3 cut(s)	545, 792, 833
AfiI	CCNNNNNNNGG	1 cut(s)	1281
AjnI	CCWGG	1 cut(s)	1274
AloI	GAACNNNNNNTCC	4 cut(s)	859, 891, 1044, 1076
Alw21I	GWGCWC	2 cut(s)	981, 1188
Alw26I	GTCTC	2 cut(s)	727, 1047
Alw44I	GTGCAC	1 cut(s)	1184
AlwI	GGATC	3 cut(s)	43, 605, 789
Ama87I	CYCGRG	1 cut(s)	980
Aor13HI	TCCGGA	1 cut(s)	613
AoxI	GGCC	3 cut(s)	60, 225, 407
ApaLI	GTGCAC	1 cut(s)	1184
ApeKI	GCWGC	5 cut(s)	703, 838, 889, 901, 946
ApoI	RAATTY	1 cut(s)	1227
AseI	ATTAAT	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	642
AspS9I	GGNCC	3 cut(s)	61, 253, 407
AsuC2I	CCSGG	2 cut(s)	452, 748
AsuHPI	GGTGA	3 cut(s)	180, 904, 1055
AsuII	TTCGAA	1 cut(s)	871
AvaI	CYCGRG	1 cut(s)	980
AvaII	GGWCC	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	1188
BanII	GRGCYC	1 cut(s)	981
Bbv12I	GWGCWC	2 cut(s)	981, 1188
BbvI	GCAGC	5 cut(s)	715, 850, 888, 901, 958
BccI	CCATC	3 cut(s)	146, 293, 433
BceAI	ACGGC	2 cut(s)	75, 212
BciT130I	CCWGG	1 cut(s)	1276
BcnI	CCSGG	2 cut(s)	452, 748
BcoDI	GTCTC	2 cut(s)	727, 1047
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	6 cut(s)	410, 704, 839, 890, 902, 947
BlsI	GCNGC	6 cut(s)	411, 705, 840, 891, 903, 948
BmcAI	AGTACT	2 cut(s)	545, 833
Bme1390I	CCNGG	3 cut(s)	452, 748, 1276
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	980
BmgT120I	GGNCC	3 cut(s)	61, 253, 407
BmiI	GGNNCC	2 cut(s)	216, 1098
BmrFI	CCNGG	3 cut(s)	452, 748, 1276
BmsI	GCATC	2 cut(s)	850, 888
BoxI	GACNNNNGTC	1 cut(s)	854
BplI	GAGNNNNNCTC	2 cut(s)	469, 501
Bpu14I	TTCGAA	1 cut(s)	871
BpuEI	CTTGAG	1 cut(s)	550
BpuMI	CCSGG	2 cut(s)	452, 748
BsaI	GGTCTC	1 cut(s)	1047
BsaJI	CCNNGG	4 cut(s)	228, 384, 1024, 1131
BsaWI	WCCGGW	1 cut(s)	613
BsaXI	ACNNNNNCTCC	2 cut(s)	1044, 1074
Bsc4I	CCNNNNNNNGG	1 cut(s)	1281
Bse3DI	GCAATG	2 cut(s)	724, 1118
BseAI	TCCGGA	1 cut(s)	613
BseBI	CCWGG	1 cut(s)	1276
BseDI	CCNNGG	4 cut(s)	228, 384, 1024, 1131
BseGI	GGATG	2 cut(s)	295, 903
BseLI	CCNNNNNNNGG	1 cut(s)	1281
BseMI	GCAATG	2 cut(s)	724, 1118
BseMII	CTCAG	2 cut(s)	738, 870
BseSI	GKGCMC	1 cut(s)	1188
BseXI	GCAGC	5 cut(s)	715, 850, 888, 901, 958
BseYI	CCCAGC	1 cut(s)	1073
BshFI	GGCC	3 cut(s)	62, 227, 409
BsiHKAI	GWGCWC	2 cut(s)	981, 1188
BsiHKCI	CYCGRG	1 cut(s)	980
BsiSI	CCGG	4 cut(s)	452, 614, 747, 1085
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	1281
BsmAI	GTCTC	2 cut(s)	727, 1047
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	62, 227, 409
Bso31I	GGTCTC	1 cut(s)	1047
BsoBI	CYCGRG	1 cut(s)	980
Bsp119I	TTCGAA	1 cut(s)	871
Bsp1286I	GDGCHC	2 cut(s)	981, 1188
Bsp13I	TCCGGA	1 cut(s)	613
Bsp143I	GATC	3 cut(s)	35, 610, 781
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	2 cut(s)	183, 410
BspANI	GGCC	3 cut(s)	62, 227, 409
BspCNI	CTCAG	2 cut(s)	737, 871
BspEI	TCCGGA	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	216, 1098
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	3 cut(s)	43, 605, 789
BspT104I	TTCGAA	1 cut(s)	871
BspTNI	GGTCTC	1 cut(s)	1047
BsrDI	GCAATG	2 cut(s)	724, 1118
BssECI	CCNNGG	4 cut(s)	228, 384, 1024, 1131
BssMI	GATC	3 cut(s)	35, 610, 781
BssT1I	CCWWGG	2 cut(s)	384, 1024
Bst2UI	CCWGG	1 cut(s)	1276
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	3 cut(s)	114, 855, 965
BstAPI	GCANNNNNTGC	2 cut(s)	898, 952
BstBI	TTCGAA	1 cut(s)	871
BstC8I	GCNNGC	3 cut(s)	487, 581, 1125
BstDEI	CTNAG	3 cut(s)	540, 724, 879
BstDSI	CCRYGG	3 cut(s)	228, 384, 1131
BstF5I	GGATG	2 cut(s)	295, 903
BstKTI	GATC	3 cut(s)	38, 613, 784
BstMAI	GTCTC	2 cut(s)	727, 1047
BstMBI	GATC	3 cut(s)	35, 610, 781
BstMWI	GCNNNNNNNGC	5 cut(s)	486, 576, 844, 898, 952
BstNI	CCWGG	1 cut(s)	1276
BstPAI	GACNNNNGTC	1 cut(s)	854
BstSCI	CCNGG	3 cut(s)	450, 746, 1274
BstSLI	GKGCMC	1 cut(s)	1188
BstV1I	GCAGC	5 cut(s)	715, 850, 888, 901, 958
BstX2I	RGATCY	1 cut(s)	35
BstXI	CCANNNNNNTGG	2 cut(s)	385, 940
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	62, 227, 409
BtgI	CCRYGG	3 cut(s)	228, 384, 1131
BtsCI	GGATG	2 cut(s)	295, 903
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	3 cut(s)	487, 581, 1125
Cfr13I	GGNCC	3 cut(s)	61, 253, 407
Csp6I	GTAC	3 cut(s)	544, 791, 832
CviAII	CATG	4 cut(s)	385, 515, 1146, 1199
CviQI	GTAC	3 cut(s)	544, 791, 832
DdeI	CTNAG	3 cut(s)	540, 724, 879
DpnI	GATC	3 cut(s)	37, 612, 783
DpnII	GATC	3 cut(s)	35, 610, 781
Eam1104I	CTCTTC	3 cut(s)	114, 855, 965
EarI	CTCTTC	3 cut(s)	114, 855, 965
Ecl136II	GAGCTC	1 cut(s)	979
Eco130I	CCWWGG	2 cut(s)	384, 1024
Eco24I	GRGCYC	1 cut(s)	981
Eco31I	GGTCTC	1 cut(s)	1047
Eco47I	GGWCC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	979
Eco57I	CTGAAG	2 cut(s)	72, 794
Eco88I	CYCGRG	1 cut(s)	980
EcoICRI	GAGCTC	1 cut(s)	979
EcoRI	GAATTC	1 cut(s)	1227
EcoRII	CCWGG	1 cut(s)	1274
EcoT14I	CCWWGG	2 cut(s)	384, 1024
EcoT38I	GRGCYC	1 cut(s)	981
ErhI	CCWWGG	2 cut(s)	384, 1024
FaeI	CATG	4 cut(s)	388, 518, 1149, 1202
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	4 cut(s)	384, 514, 1145, 1198
Fnu4HI	GCNGC	6 cut(s)	410, 704, 839, 890, 902, 947
FokI	GGATG	2 cut(s)	302, 910
FriOI	GRGCYC	1 cut(s)	981
Fsp4HI	GCNGC	6 cut(s)	410, 704, 839, 890, 902, 947
GluI	GCNGC	6 cut(s)	410, 704, 839, 890, 902, 947
GsaI	CCCAGC	1 cut(s)	1077
HaeIII	GGCC	3 cut(s)	62, 227, 409
HapII	CCGG	4 cut(s)	452, 614, 747, 1085
Hin1II	CATG	4 cut(s)	388, 518, 1149, 1202
HindIII	AAGCTT	2 cut(s)	493, 568
HinfI	GANTC	4 cut(s)	597, 811, 868, 1261
HpaII	CCGG	4 cut(s)	452, 614, 747, 1085
HphI	GGTGA	3 cut(s)	180, 904, 1055
Hpy166II	GTNNAC	3 cut(s)	445, 1186, 1195
Hpy188I	TCNGA	4 cut(s)	91, 438, 880, 1210
Hpy188III	TCNNGA	4 cut(s)	601, 614, 785, 808
Hpy8I	GTNNAC	3 cut(s)	445, 1186, 1195
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	4 cut(s)	598, 632, 772, 999
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	4 cut(s)	632, 955, 1186, 1252
HpyF10VI	GCNNNNNNNGC	5 cut(s)	486, 576, 844, 898, 952
HpyF3I	CTNAG	3 cut(s)	540, 724, 879
HpySE526I	ACGT	1 cut(s)	789
Hsp92II	CATG	4 cut(s)	388, 518, 1149, 1202
Kpn2I	TCCGGA	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	35, 610, 781
LmnI	GCTCC	3 cut(s)	477, 943, 1224
Lsp1109I	GCAGC	5 cut(s)	715, 850, 888, 901, 958
LweI	GCATC	2 cut(s)	850, 888
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	1 cut(s)	1011
MalI	GATC	3 cut(s)	37, 612, 783
MboI	GATC	3 cut(s)	35, 610, 781
MfeI	CAATTG	2 cut(s)	316, 1079
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	2 cut(s)	981, 1188
MlyI	GAGTC	1 cut(s)	1255
MmeI	TCCRAC	1 cut(s)	784
MroI	TCCGGA	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	2 cut(s)	339, 1291
MspA1I	CMGCKG	1 cut(s)	847
MspI	CCGG	4 cut(s)	452, 614, 747, 1085
MspR9I	CCNGG	3 cut(s)	452, 748, 1276
MunI	CAATTG	2 cut(s)	316, 1079
MvaI	CCWGG	1 cut(s)	1276
MwoI	GCNNNNNNNGC	5 cut(s)	486, 576, 844, 898, 952
NciI	CCSGG	2 cut(s)	452, 748
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	3 cut(s)	35, 610, 781
NlaIII	CATG	4 cut(s)	388, 518, 1149, 1202
NlaIV	GGNNCC	2 cut(s)	216, 1098
NspV	TTCGAA	1 cut(s)	871
PaeR7I	CTCGAG	1 cut(s)	980
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	3 cut(s)	597, 811, 868
PflMI	CCANNNNNTGG	1 cut(s)	1281
PkrI	GCNGC	6 cut(s)	411, 705, 840, 891, 903, 948
PleI	GAGTC	1 cut(s)	1255
PpsI	GAGTC	1 cut(s)	1255
PshAI	GACNNNNGTC	1 cut(s)	854
PshBI	ATTAAT	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	981
Psp6I	CCWGG	1 cut(s)	1274
PspFI	CCCAGC	1 cut(s)	1073
PspGI	CCWGG	1 cut(s)	1274
PspN4I	GGNNCC	2 cut(s)	216, 1098
PspPI	GGNCC	3 cut(s)	61, 253, 407
PspXI	VCTCGAGB	1 cut(s)	980
PsuI	RGATCY	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	847
RsaI	GTAC	3 cut(s)	545, 792, 833
RsaNI	GTAC	3 cut(s)	544, 791, 832
SacI	GAGCTC	1 cut(s)	981
SaqAI	TTAA	2 cut(s)	339, 1291
SatI	GCNGC	6 cut(s)	410, 704, 839, 890, 902, 947
Sau3AI	GATC	3 cut(s)	35, 610, 781
Sau96I	GGNCC	3 cut(s)	61, 253, 407
ScaI	AGTACT	2 cut(s)	545, 833
SchI	GAGTC	1 cut(s)	1255
ScrFI	CCNGG	3 cut(s)	452, 748, 1276
SduI	GDGCHC	2 cut(s)	981, 1188
SfaNI	GCATC	2 cut(s)	850, 888
Sfr274I	CTCGAG	1 cut(s)	980
SfuI	TTCGAA	1 cut(s)	871
SinI	GGWCC	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	980
SmlI	CTYRAG	2 cut(s)	565, 980
SmoI	CTYRAG	2 cut(s)	565, 980
SsiI	CCGC	2 cut(s)	183, 410
SspI	AATATT	1 cut(s)	337
SstI	GAGCTC	1 cut(s)	981
StyD4I	CCNGG	3 cut(s)	450, 746, 1274
StyI	CCWWGG	2 cut(s)	384, 1024
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	7 cut(s)	56, 399, 765, 801, 858, 871, 981
TatI	WGTACW	2 cut(s)	543, 831
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	3 cut(s)	597, 811, 868
Tru1I	TTAA	2 cut(s)	339, 1291
Tru9I	TTAA	2 cut(s)	339, 1291
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	5 cut(s)	703, 838, 889, 901, 946
TspDTI	ATGAA	6 cut(s)	42, 159, 487, 562, 651, 1259
TspGWI	ACGGA	1 cut(s)	1120
TspRI	CASTG	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	1281
VneI	GTGCAC	1 cut(s)	1184
VpaK11BI	GGWCC	1 cut(s)	253
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	1 cut(s)	1227
XhoI	CTCGAG	1 cut(s)	980
XmnI	GAANNNNTTC	1 cut(s)	642
ZrmI	AGTACT	2 cut(s)	545, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.