Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010515

Physical Location & Seq

Genomic Coordinates Forward (+)

13206878 .. 13208053

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTGGTTCCTGACGGTGGTGGAAGTTCAGGCGGTGGAGACGGTGATGGGACGCCTTCCCGGCCACTGTCGTCGAAAACCCAGTTTCCAAAAACCAGCATTGGTTTGAAACGAGCAGAGAACGAGCTTGATCAAGTCAAAGAAGAAGTGACCGAACTGAAAAAAGAGATAAAGGCATTGACTTCTTCCAAAGGCGGAAACTTTGACCTCTCGTCTTCCTCGTCTTCCTCCGCCGCTCCGCCGAACCGAGCGGCGGAATTGCTCCACGTGAAGGAAGAAACAGTAGATGTTGTGGTTGTGGAGGATGATGAATTCGACGGTGGAGGCCACTTCAACACCATCAACGGCTGTGGTGGTGATTTTGGGTCTTCTTCCATGGAGCTGCCTAAACCCATGGAGGGTTTGCGCGAGGTGGGCCCACCGCCGTTCTTGAACAAGACTTTTCAGATGGTGGACGACCCGGAAACCGATTCCGTCGTTTCGTGGAGTGATACTCGGCAGAGCTTCATTGTTTGGGACTTGTACGAATTCTCCAGGACTCTCCTGCCCAAATACTTCAAGCACAACAATATCTCAAGCTTCATTCGCCAGCTCAACACTTATTCAAAAAGGTTGATCCGGACAGGTGGGAGTTTGCAAATGAAGGGTTCCAGGGTGGGAAGAAGCACTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

225

Amino Acids

24.3

Weight (kDa)

5.34

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07800
malus_domestica	MD02G1082000.v1.1 MD12G1184500.v1.1 MD15G1209400.v1.1
prunus_persica	Prupe.7G206900_v2.0.a1
pyrus_communis	pycom02g06490 pycom15g18570
rosa_chinensis	RchiOBHm_Chr2g0093671
rosa_laevigata	RLG00000016427
rosa_roxburghii	Rroxscaffold_2G00147910
rosa_rugosa	Rorug02G0038700 Rorug05G0356600
rosa_samantha	Rh2AG085100 Rh2BG085600 Rh2CG087900 Rh2DG083400 Rh3AG094700 Rh3CG099000 Rh3DG098400
rosa_wichuraiana	Rw0G013900 Rw3G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	236, 251
AccII	CGCG	1 cut(s)	408
AccIII	TCCGGA	1 cut(s)	618
AciI	CCGC	8 cut(s)	33, 195, 231, 234, 239, 251, 254, 422
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	311, 527
AcvI	CACGTG	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	4 cut(s)	17, 253, 271, 398
AgsI	TTSAA	5 cut(s)	109, 334, 433, 559, 606
AhdI	GACNNNNNGTC	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	533, 650
AluBI	AGCT	5 cut(s)	127, 382, 504, 579, 592
AluI	AGCT	5 cut(s)	127, 382, 504, 579, 592
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	610
Aor13HI	TCCGGA	1 cut(s)	618
AoxI	GGCC	3 cut(s)	62, 325, 415
ApaI	GGGCCC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	382
ApoI	RAATTY	2 cut(s)	311, 527
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	415, 416
AsuC2I	CCSGG	2 cut(s)	61, 461
AsuHPI	GGTGA	2 cut(s)	56, 368
BaeGI	GKGCMC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	419
BbrPI	CACGTG	1 cut(s)	268
BbsI	GAAGAC	3 cut(s)	207, 216, 360
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	3 cut(s)	41, 347, 442
BceAI	ACGGC	2 cut(s)	361, 409
BciT130I	CCWGG	2 cut(s)	535, 652
BclI	TGATCA	1 cut(s)	130
BcnI	CCSGG	2 cut(s)	61, 461
BcoDI	GTCTC	1 cut(s)	33
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	234, 252, 383
BlsI	GCNGC	3 cut(s)	235, 253, 384
Bme1390I	CCNGG	4 cut(s)	61, 461, 535, 652
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	415, 416
BmiI	GGNNCC	3 cut(s)	9, 417, 649
BmrFI	CCNGG	4 cut(s)	61, 461, 535, 652
BmrI	ACTGGG	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	3 cut(s)	207, 216, 360
BplI	GAGNNNNNCTC	2 cut(s)	478, 510
BpmI	CTGGAG	1 cut(s)	517
BpuEI	CTTGAG	1 cut(s)	559
BpuMI	CCSGG	2 cut(s)	61, 461
BsaAI	YACGTR	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	375, 393, 651
BsaWI	WCCGGW	1 cut(s)	618
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 253, 271, 398
Bse1I	ACTGG	1 cut(s)	82
BseAI	TCCGGA	1 cut(s)	618
BseBI	CCWGG	2 cut(s)	535, 652
BseDI	CCNNGG	3 cut(s)	375, 393, 651
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	4 cut(s)	17, 253, 271, 398
BseNI	ACTGG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	64, 327, 417
BsiSI	CCGG	3 cut(s)	61, 461, 619
BslFI	GGGAC	2 cut(s)	64, 530
BslI	CCNNNNNNNGG	4 cut(s)	17, 253, 271, 398
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	64, 530
BsnI	GGCC	3 cut(s)	64, 327, 417
Bsp120I	GGGCCC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp13I	TCCGGA	1 cut(s)	618
Bsp143I	GATC	2 cut(s)	130, 615
Bsp19I	CCATGG	2 cut(s)	375, 393
BspACI	CCGC	8 cut(s)	33, 195, 231, 234, 239, 251, 254, 422
BspANI	GGCC	3 cut(s)	64, 327, 417
BspEI	TCCGGA	1 cut(s)	618
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	3 cut(s)	9, 417, 649
BspPI	GGATC	1 cut(s)	610
BsrBI	CCGCTC	2 cut(s)	236, 251
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	375, 393, 651
BssMI	GATC	2 cut(s)	130, 615
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	2 cut(s)	375, 393
Bst2UI	CCWGG	2 cut(s)	535, 652
Bst4CI	ACNGT	5 cut(s)	17, 44, 69, 283, 320
BstACI	GRCGYC	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	590
BstDSI	CCRYGG	2 cut(s)	375, 393
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	2 cut(s)	133, 618
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	2 cut(s)	130, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 414, 585
BstNI	CCWGG	2 cut(s)	535, 652
BstSCI	CCNGG	4 cut(s)	59, 459, 533, 650
BstSLI	GKGCMC	1 cut(s)	419
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	369
BstV2I	GAAGAC	3 cut(s)	207, 216, 360
BsuRI	GGCC	3 cut(s)	64, 327, 417
BtgI	CCRYGG	2 cut(s)	375, 393
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	590
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	2 cut(s)	415, 416
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	523
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	2 cut(s)	376, 394
CviJI	RGCY	9 cut(s)	64, 127, 327, 348, 382, 417, 504, 579, 592
CviKI_1	RGCY	9 cut(s)	64, 127, 327, 348, 382, 417, 504, 579, 592
CviQI	GTAC	1 cut(s)	523
DpnI	GATC	2 cut(s)	132, 617
DpnII	GATC	2 cut(s)	130, 615
DriI	GACNNNNNGTC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EciI	GGCGGA	4 cut(s)	210, 220, 228, 269
Eco130I	CCWWGG	2 cut(s)	375, 393
Eco24I	GRGCYC	1 cut(s)	419
Eco72I	CACGTG	1 cut(s)	268
EcoRI	GAATTC	2 cut(s)	311, 527
EcoRII	CCWGG	2 cut(s)	533, 650
EcoT14I	CCWWGG	2 cut(s)	375, 393
EcoT38I	GRGCYC	1 cut(s)	419
ErhI	CCWWGG	2 cut(s)	375, 393
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	2 cut(s)	379, 397
FaiI	YATR	2 cut(s)	377, 395
FalI	AAGNNNNNCTT	1 cut(s)	652
FaqI	GGGAC	2 cut(s)	64, 530
FatI	CATG	2 cut(s)	375, 393
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	234, 252, 383
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	3 cut(s)	234, 252, 383
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	3 cut(s)	234, 252, 383
GsuI	CTGGAG	1 cut(s)	517
HaeIII	GGCC	3 cut(s)	64, 327, 417
HapII	CCGG	3 cut(s)	61, 461, 619
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	408
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	379, 397
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	2 cut(s)	470, 538
HpaII	CCGG	3 cut(s)	61, 461, 619
HphI	GGTGA	2 cut(s)	56, 368
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	3 cut(s)	11, 430, 619
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	3 cut(s)	76, 320, 479
HpyAV	CCTTC	3 cut(s)	66, 265, 637
HpyCH4III	ACNGT	5 cut(s)	17, 44, 69, 283, 320
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	1 cut(s)	637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 414, 585
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	379, 397
HspAI	GCGC	1 cut(s)	406
Kpn2I	TCCGGA	1 cut(s)	618
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	130, 615
LmnI	GCTCC	3 cut(s)	241, 267, 379
Lsp1109I	GCAGC	1 cut(s)	369
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	132, 617
MbiI	CCGCTC	2 cut(s)	236, 251
MboI	GATC	2 cut(s)	130, 615
MboII	GAAGA	8 cut(s)	155, 177, 207, 216, 287, 360, 363, 672
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	3 cut(s)	257, 311, 527
MlyI	GAGTC	1 cut(s)	532
MnlI	CCTC	7 cut(s)	218, 229, 238, 295, 317, 391, 403
MroI	TCCGGA	1 cut(s)	618
MspI	CCGG	3 cut(s)	61, 461, 619
MspR9I	CCNGG	4 cut(s)	61, 461, 535, 652
MvaI	CCWGG	2 cut(s)	535, 652
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	3 cut(s)	61, 414, 585
NciI	CCSGG	2 cut(s)	61, 461
NcoI	CCATGG	2 cut(s)	375, 393
NdeII	GATC	2 cut(s)	130, 615
NlaIII	CATG	2 cut(s)	379, 397
NlaIV	GGNNCC	3 cut(s)	9, 417, 649
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	235, 253, 384
PleI	GAGTC	1 cut(s)	532
PmaCI	CACGTG	1 cut(s)	268
PmlI	CACGTG	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	532
Ppu21I	YACGTR	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	533, 650
PspCI	CACGTG	1 cut(s)	268
PspGI	CCWGG	2 cut(s)	533, 650
PspN4I	GGNNCC	3 cut(s)	9, 417, 649
PspOMI	GGGCCC	1 cut(s)	415
PspPI	GGNCC	2 cut(s)	415, 416
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SatI	GCNGC	3 cut(s)	234, 252, 383
Sau3AI	GATC	2 cut(s)	130, 615
Sau96I	GGNCC	2 cut(s)	415, 416
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	4 cut(s)	61, 461, 535, 652
SduI	GDGCHC	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	3 cut(s)	257, 311, 527
SsiI	CCGC	8 cut(s)	33, 195, 231, 234, 239, 251, 254, 422
StyD4I	CCNGG	4 cut(s)	59, 459, 533, 650
StyI	CCWWGG	2 cut(s)	375, 393
TaaI	ACNGT	5 cut(s)	17, 44, 69, 283, 320
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	74, 315
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	3 cut(s)	257, 311, 527
TauI	GCSGC	2 cut(s)	236, 254
TfiI	GAWTC	1 cut(s)	470
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	4 cut(s)	324, 496, 571, 656
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	1 cut(s)	72
XapI	RAATTY	2 cut(s)	311, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.