Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010515

Physical Location & Seq

Genomic Coordinates Reverse (-)

45086279 .. 45086779

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0356600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGATAGGGCAGTAGGGGAAACACCACAAACAACAATAGCAGGTGTTGGCACACCACATACATTCATCTCTCCAGATCCCTCGAACCCATTGACAAGCACGTTTACCCTCGGCAGCAGCCAGACCCCACCTATCCCAACCACGGTAGCCGGGTCCACAACGACCCTGACTACAACAAGTGGCACCTCGAACATCATCTACTTGAATACACCAATCCGGACTAATACTTTGAGTGGTGCACCGCCGATGCTAACACCCTTTAACACAATCCCTCATGCTAACATACCTCCAACATGCCACAATGCAACCCCAGACTTGAATACTCAGTTGCTACTACAGATGAACCAAGCAATCATTGCCTTGCAAGCACGAGTGGAACTTGCCGAGAGTAGGATTCGAACTGCAGCCAGTCACAGCCGGATTCGAACAAAAGCCTGGACCATTCACACAGCGAATCCAAGCCGAGAAGAGATCCCAAGAATCCAAGCCCTTCAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

166

Amino Acids

17.74

Weight (kDa)

9.29

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07800
malus_domestica	MD02G1082000.v1.1 MD12G1184500.v1.1 MD15G1209400.v1.1
prunus_persica	Prupe.7G206900_v2.0.a1
pyrus_communis	pycom02g06490 pycom15g18570
rosa_chinensis	RchiOBHm_Chr2g0093671
rosa_laevigata	RLG00000016427
rosa_roxburghii	Rroxscaffold_2G00147910
rosa_rugosa	Rorug02G0038700 Rorug05G0356600
rosa_samantha	Rh2AG085100 Rh2BG085600 Rh2CG087900 Rh2DG083400 Rh3AG094700 Rh3CG099000 Rh3DG098400
rosa_wichuraiana	Rw0G013900 Rw3G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	32
Acc36I	ACCTGC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	216
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	71, 466
AfiI	CCNNNNNNNGG	2 cut(s)	142, 390
AgsI	TTSAA	3 cut(s)	205, 319, 494
AjnI	CCWGG	1 cut(s)	434
Alw21I	GWGCWC	1 cut(s)	241
Alw44I	GTGCAC	1 cut(s)	237
AlwI	GGATC	2 cut(s)	71, 466
Aor13HI	TCCGGA	1 cut(s)	216
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	114, 117, 404
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AspS9I	GGNCC	2 cut(s)	153, 438
AsuC2I	CCSGG	1 cut(s)	151
AsuII	TTCGAA	2 cut(s)	397, 424
AvaII	GGWCC	2 cut(s)	153, 438
BaeGI	GKGCMC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	182
BauI	CACGAG	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	126, 129, 416
BciT130I	CCWGG	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	151
BfmI	CTRYAG	2 cut(s)	335, 402
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	115, 118, 405
BlsI	GCNGC	3 cut(s)	116, 119, 406
Bme1390I	CCNGG	2 cut(s)	151, 436
Bme18I	GGWCC	2 cut(s)	153, 438
BmgT120I	GGNCC	2 cut(s)	153, 438
BmiI	GGNNCC	2 cut(s)	154, 184
BmrFI	CCNGG	2 cut(s)	151, 436
BmsI	GCATC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	57
Bpu14I	TTCGAA	2 cut(s)	397, 424
BpuMI	CCSGG	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	109, 141
BsaWI	WCCGGW	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 390
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	109, 141
BseLI	CCNNNNNNNGG	2 cut(s)	142, 390
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	126, 129, 416
BshNI	GGYRCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	3 cut(s)	150, 217, 418
BslI	CCNNNNNNNGG	2 cut(s)	142, 390
Bsp119I	TTCGAA	2 cut(s)	397, 424
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp13I	TCCGGA	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	76, 471
BspACI	CCGC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	337
BspEI	TCCGGA	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	154, 184
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	71, 466
BspT104I	TTCGAA	2 cut(s)	397, 424
BspT107I	GGYRCC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	2 cut(s)	109, 141
BssMI	GATC	2 cut(s)	76, 471
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBI	TTCGAA	2 cut(s)	397, 424
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	79, 474
BstMBI	GATC	2 cut(s)	76, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 365
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	149, 434
BstSFI	CTRYAG	2 cut(s)	335, 402
BstSLI	GKGCMC	1 cut(s)	241
BstV1I	GCAGC	3 cut(s)	126, 129, 416
BstX2I	RGATCY	2 cut(s)	76, 471
BstYI	RGATCY	2 cut(s)	76, 471
BtgI	CCRYGG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	153, 438
CviAII	CATG	2 cut(s)	275, 294
CviJI	RGCY	7 cut(s)	120, 149, 407, 417, 434, 462, 488
CviKI_1	RGCY	7 cut(s)	120, 149, 407, 417, 434, 462, 488
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	2 cut(s)	78, 473
DpnII	GATC	2 cut(s)	76, 471
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco47I	GGWCC	2 cut(s)	153, 438
EcoRII	CCWGG	1 cut(s)	434
FaeI	CATG	2 cut(s)	278, 297
FaiI	YATR	4 cut(s)	60, 276, 284, 295
FatI	CATG	2 cut(s)	274, 293
Fnu4HI	GCNGC	3 cut(s)	115, 118, 405
Fsp4HI	GCNGC	3 cut(s)	115, 118, 405
GluI	GCNGC	3 cut(s)	115, 118, 405
GsuI	CTGGAG	1 cut(s)	57
HapII	CCGG	3 cut(s)	150, 217, 418
Hin1II	CATG	2 cut(s)	278, 297
HinfI	GANTC	4 cut(s)	394, 421, 454, 480
HpaII	CCGG	3 cut(s)	150, 217, 418
Hpy166II	GTNNAC	3 cut(s)	105, 156, 239
Hpy188III	TCNNGA	2 cut(s)	74, 217
Hpy8I	GTNNAC	3 cut(s)	105, 156, 239
HpyAV	CCTTC	1 cut(s)	500
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	4 cut(s)	239, 305, 364, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 365
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	278, 297
Kpn2I	TCCGGA	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	76, 471
Lsp1109I	GCAGC	3 cut(s)	126, 129, 416
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	2 cut(s)	78, 473
MboI	GATC	2 cut(s)	76, 471
MboII	GAAGA	1 cut(s)	479
MflI	RGATCY	2 cut(s)	76, 471
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	1 cut(s)	496
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	5 cut(s)	91, 119, 196, 282, 297
MroI	TCCGGA	1 cut(s)	216
MseI	TTAA	2 cut(s)	261, 499
MspI	CCGG	3 cut(s)	150, 217, 418
MspR9I	CCNGG	2 cut(s)	151, 436
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	2 cut(s)	356, 365
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	2 cut(s)	76, 471
NlaIII	CATG	2 cut(s)	278, 297
NlaIV	GGNNCC	2 cut(s)	154, 184
NmeAIII	GCCGAG	3 cut(s)	90, 409, 488
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	1 cut(s)	297
NspV	TTCGAA	2 cut(s)	397, 424
PaqCI	CACCTGC	1 cut(s)	32
PfeI	GAWTC	4 cut(s)	394, 421, 454, 480
PkrI	GCNGC	3 cut(s)	116, 119, 406
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	154, 184
PspPI	GGNCC	2 cut(s)	153, 438
PsrI	GAACNNNNNNTAC	2 cut(s)	182, 214
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	76, 471
SaqAI	TTAA	2 cut(s)	261, 499
SatI	GCNGC	3 cut(s)	115, 118, 405
Sau3AI	GATC	2 cut(s)	76, 471
Sau96I	GGNCC	2 cut(s)	153, 438
ScrFI	CCNGG	2 cut(s)	151, 436
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	5 cut(s)	46, 104, 133, 188, 289
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	2 cut(s)	335, 402
SfuI	TTCGAA	2 cut(s)	397, 424
SinI	GGWCC	2 cut(s)	153, 438
Sse9I	AATT	1 cut(s)	496
SsiI	CCGC	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	149, 434
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	4 cut(s)	83, 188, 397, 424
TasI	AATT	1 cut(s)	496
TfiI	GAWTC	4 cut(s)	394, 421, 454, 480
Tru1I	TTAA	2 cut(s)	261, 499
Tru9I	TTAA	2 cut(s)	261, 499
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	3 cut(s)	114, 117, 404
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	2 cut(s)	55, 356
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	2 cut(s)	153, 438
XceI	RCATGY	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.