Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004189

Physical Location & Seq

Genomic Coordinates Forward (+)

6848682 .. 6851134

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCACACAGCGCAATGTTCATTTCTGCCGGTCATTGAACAAAACCTTCTGTCTTCCTTTCCCTGGGATTTGAGAGAAAGAGAGATGAGTTTCATGATGATGAATTATGAGGTTGATCACCAAAGGATCAAAACCAATGGAATATGGATGCATGTAGCAGAGAAAGGTACAGGTCCACTTGTTCTATTGATTCATGGCTTCCCACAATTCTGGTATGCTTGGCGCCACCAGATCAACTTCTTGGCTGATAAGGGCTACCACGTCGTGGCTCCTGATTTGAGAGGCTATGGTGACTCTGACTCTCCCCTCAGCCCCAGCTCCTACTCCATGATGCACATAGTTGGAGACCTCATTGGCCTAATAGATCATTTTGGTCAACAGAAGGCATATGTAGTAGGACATGACTGGGGAGCAGTTGCTGGGTGGTATCTGAGTTTGTTCAGGCCAGATAGAGTTATGGGGCTTGTCACTCTAACAGTTCCATATTATCCGAGGTCTCCGACCACTAAAACTATCCCATCGATCCAAAAGGTTTACGGAGATGGATGTCATGTCATTCAATTCCAGGAACCGGGAAGAGCAGAGAGAGCGTTTGCGAGGTATGACTACACGACAGTGATGAAGAAGTTCTTTCTTATAACCGACAAAATGATAGCCCCTCCGGACATGGAGATCATTGATTTCCTGGAAACCAAGTGGTCATTGCCACCATGGCTAACAGAAGAGGATATCCAGGTGTATGCTGAGAAATTTGAGGAATCTGGCTTCACTGGTGCTTTCAACTACTACCGTGCAATGGACCTGACTTGGGAACTTCTTGCACCCTGGCAAGGATCAAAAATCACAGTTCCCGTGAAGTTCATAGTCGGTAACAAAGAATTTGGATTCCAGTCTGGTGGCGTAAAGGATTTTGTGGAAGGTGATGAGTTCAAGAGCCTTGTCCCGGACCTGGAAGTGGTTGTTATAGACGGACACCATTTTATTCAAGAAGAGAACCATCAAGAAGTCTCCAACCATATACTTTCCTTCCTGGGCAAACATCCAATGGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

352

Amino Acids

40.39

Weight (kDa)

5.4

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	59 - 160	2.1e-25	alpha/beta hydrolase fold
Hydrolase_4	PF12146	60 - 160	3.2e-10	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	61 - 336	1.3e-17	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51000
fragaria_vesca	FvH4_1g12460 FvH4_1g12461
malus_domestica	MD02G1138300.v1.1 MD02G1138500.v1.1 MD02G1138600.v1.1 MD15G1252000.v1.1
prunus_persica	Prupe.7G162300_v2.0.a1 Prupe.7G162400_v2.0.a1 Prupe.7G162400_v2.0.a1
pyrus_communis	pycom02g10960 pycom02g10980 pycom15g22200
rosa_chinensis	RchiOBHm_Chr2g0100321 RchiOBHm_Chr2g0100331
rosa_laevigata	RLG00000016965 RLG00000016966
rosa_multiflora	Rmu_sc0003340.1_g000002 Rmu_sc0003340.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142320 Rroxscaffold_2G00142330
rosa_rugosa	Rorug02G0087700 Rorug02G0087700
rosa_samantha	Rh2AG136700 Rh2AG136800 Rh2BG140200 Rh2BG140300 Rh2CG142000 Rh2CG142100 Rh2DG142100 Rh2DG142200
rosa_wichuraiana	Rw2G010690 Rw2G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	638
AccB1I	GGYRCC	1 cut(s)	222
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	661
AclWI	GGATC	3 cut(s)	134, 517, 841
AcsI	RAATTY	2 cut(s)	749, 878
AcyI	GRCGYC	1 cut(s)	223
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	9 cut(s)	63, 265, 571, 796, 808, 830, 943, 949, 955
AgsI	TTSAA	5 cut(s)	38, 560, 781, 931, 986
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	7 cut(s)	62, 564, 684, 732, 824, 948, 1029
AleI	CACNNNNGTG	1 cut(s)	614
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw26I	GTCTC	3 cut(s)	339, 501, 1012
AlwI	GGATC	3 cut(s)	134, 517, 841
AlwNI	CAGNNNCTG	1 cut(s)	419
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	2 cut(s)	355, 443
ApoI	RAATTY	2 cut(s)	749, 878
Asp700I	GAANNNNTTC	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	13, 225
AspS9I	GGNCC	3 cut(s)	173, 799, 946
AsuC2I	CCSGG	2 cut(s)	573, 944
AsuHPI	GGTGA	3 cut(s)	110, 302, 932
AvaII	GGWCC	3 cut(s)	173, 799, 946
BanI	GGYRCC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	308
BccI	CCATC	3 cut(s)	526, 536, 1005
BciT130I	CCWGG	7 cut(s)	64, 566, 686, 734, 826, 950, 1031
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	2 cut(s)	573, 944
BcoDI	GTCTC	3 cut(s)	339, 501, 1012
BfoI	RGCGCY	1 cut(s)	226
BglI	GCCNNNNNGGC	1 cut(s)	712
Bme1390I	CCNGG	9 cut(s)	64, 566, 573, 686, 734, 826, 944, 950, 1031
Bme18I	GGWCC	3 cut(s)	173, 799, 946
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	3 cut(s)	173, 799, 946
BmiI	GGNNCC	3 cut(s)	224, 270, 570
BmrFI	CCNGG	9 cut(s)	64, 566, 573, 686, 734, 826, 944, 950, 1031
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	2 cut(s)	138, 321
BmuI	ACTGGG	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	573, 944
Bsa29I	ATCGAT	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	223
BsaI	GGTCTC	2 cut(s)	339, 501
BsaJI	CCNNGG	6 cut(s)	62, 63, 491, 710, 824, 1030
BsaWI	WCCGGW	1 cut(s)	661
Bsc4I	CCNNNNNNNGG	9 cut(s)	63, 265, 571, 796, 808, 830, 943, 949, 955
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	3 cut(s)	410, 775, 889
Bse3DI	GCAATG	3 cut(s)	20, 701, 801
BseAI	TCCGGA	1 cut(s)	661
BseBI	CCWGG	7 cut(s)	64, 566, 686, 734, 826, 950, 1031
BseCI	ATCGAT	1 cut(s)	521
BseDI	CCNNGG	6 cut(s)	62, 63, 491, 710, 824, 1030
BseGI	GGATG	3 cut(s)	153, 551, 1039
BseLI	CCNNNNNNNGG	9 cut(s)	63, 265, 571, 796, 808, 830, 943, 949, 955
BseMI	GCAATG	3 cut(s)	20, 701, 801
BseMII	CTCAG	3 cut(s)	322, 422, 735
BseNI	ACTGG	3 cut(s)	410, 775, 889
BseYI	CCCAGC	2 cut(s)	314, 419
BshFI	GGCC	2 cut(s)	357, 445
BshNI	GGYRCC	1 cut(s)	222
BshVI	ATCGAT	1 cut(s)	521
BsiSI	CCGG	4 cut(s)	29, 572, 662, 944
BslFI	GGGAC	1 cut(s)	926
BslI	CCNNNNNNNGG	9 cut(s)	63, 265, 571, 796, 808, 830, 943, 949, 955
BsmAI	GTCTC	3 cut(s)	339, 501, 1012
BsmFI	GGGAC	1 cut(s)	926
BsnI	GGCC	2 cut(s)	357, 445
Bso31I	GGTCTC	2 cut(s)	339, 501
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	8 cut(s)	115, 126, 231, 364, 522, 672, 833, 1048
Bsp19I	CCATGG	1 cut(s)	710
BspANI	GGCC	2 cut(s)	357, 445
BspCNI	CTCAG	3 cut(s)	321, 423, 736
BspDI	ATCGAT	1 cut(s)	521
BspEI	TCCGGA	1 cut(s)	661
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	3 cut(s)	224, 270, 570
BspPI	GGATC	3 cut(s)	134, 517, 841
BspQI	GCTCTTC	1 cut(s)	571
BspT107I	GGYRCC	1 cut(s)	222
BspTNI	GGTCTC	2 cut(s)	339, 501
BsrDI	GCAATG	3 cut(s)	20, 701, 801
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	3 cut(s)	410, 775, 889
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	6 cut(s)	62, 63, 491, 710, 824, 1030
BssMI	GATC	8 cut(s)	115, 126, 231, 364, 522, 672, 833, 1048
BssNI	GRCGYC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	710
Bst2UI	CCWGG	7 cut(s)	64, 566, 686, 734, 826, 950, 1031
Bst4CI	ACNGT	4 cut(s)	478, 616, 791, 847
Bst6I	CTCTTC	3 cut(s)	571, 717, 984
BstACI	GRCGYC	1 cut(s)	223
BstDEI	CTNAG	3 cut(s)	308, 431, 744
BstDSI	CCRYGG	1 cut(s)	710
BstF5I	GGATG	3 cut(s)	153, 551, 1039
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	13, 225
BstKTI	GATC	8 cut(s)	118, 129, 234, 367, 525, 675, 836, 1051
BstMAI	GTCTC	3 cut(s)	339, 501, 1012
BstMBI	GATC	8 cut(s)	115, 126, 231, 364, 522, 672, 833, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 587, 712
BstNI	CCWGG	7 cut(s)	64, 566, 686, 734, 826, 950, 1031
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	9 cut(s)	62, 564, 571, 684, 732, 824, 942, 948, 1029
BstV2I	GAAGAC	1 cut(s)	45
BstXI	CCANNNNNNTGG	2 cut(s)	210, 896
Bsu15I	ATCGAT	1 cut(s)	521
BsuRI	GGCC	2 cut(s)	357, 445
BsuTUI	ATCGAT	1 cut(s)	521
BtgI	CCRYGG	1 cut(s)	710
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	153, 551, 1039
BtsIMutI	CAGTG	2 cut(s)	621, 768
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	2 cut(s)	13, 225
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	3 cut(s)	173, 799, 946
ClaI	ATCGAT	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	8 cut(s)	94, 152, 194, 328, 401, 551, 667, 711
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	3 cut(s)	308, 431, 744
DinI	GGCGCC	1 cut(s)	224
DpnI	GATC	8 cut(s)	117, 128, 233, 366, 524, 674, 835, 1050
DpnII	GATC	8 cut(s)	115, 126, 231, 364, 522, 672, 833, 1048
DraIII	CACNNNGTG	1 cut(s)	265
Eam1104I	CTCTTC	3 cut(s)	571, 717, 984
EarI	CTCTTC	3 cut(s)	571, 717, 984
Eco130I	CCWWGG	1 cut(s)	710
Eco31I	GGTCTC	2 cut(s)	339, 501
Eco32I	GATATC	1 cut(s)	730
Eco47I	GGWCC	3 cut(s)	173, 799, 946
EcoRII	CCWGG	7 cut(s)	62, 564, 684, 732, 824, 948, 1029
EcoRV	GATATC	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	710
EcoT22I	ATGCAT	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	710
FaeI	CATG	8 cut(s)	97, 155, 197, 331, 404, 554, 670, 714
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	1 cut(s)	926
FatI	CATG	8 cut(s)	93, 151, 193, 327, 400, 550, 666, 710
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	115
FokI	GGATG	3 cut(s)	160, 558, 1026
GlaI	GCGC	2 cut(s)	12, 224
GsaI	CCCAGC	2 cut(s)	318, 423
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	357, 445
HapII	CCGG	4 cut(s)	29, 572, 662, 944
HhaI	GCGC	2 cut(s)	13, 225
Hin1I	GRCGYC	1 cut(s)	223
Hin1II	CATG	8 cut(s)	97, 155, 197, 331, 404, 554, 670, 714
Hin6I	GCGC	2 cut(s)	11, 223
HinP1I	GCGC	2 cut(s)	11, 223
HincII	GTYRAC	1 cut(s)	377
HindII	GTYRAC	1 cut(s)	377
HinfI	GANTC	5 cut(s)	190, 293, 299, 758, 885
HpaII	CCGG	4 cut(s)	29, 572, 662, 944
HphI	GGTGA	3 cut(s)	110, 302, 932
Hpy166II	GTNNAC	3 cut(s)	176, 377, 535
Hpy188I	TCNGA	4 cut(s)	298, 432, 492, 501
Hpy188III	TCNNGA	6 cut(s)	94, 272, 662, 931, 986, 1001
Hpy8I	GTNNAC	3 cut(s)	176, 377, 535
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	4 cut(s)	56, 376, 911, 1036
HpyCH4III	ACNGT	4 cut(s)	478, 616, 791, 847
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	5 cut(s)	4, 151, 334, 794, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 587, 712
HpyF3I	CTNAG	3 cut(s)	308, 431, 744
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	223
Hsp92II	CATG	8 cut(s)	97, 155, 197, 331, 404, 554, 670, 714
HspAI	GCGC	2 cut(s)	11, 223
KasI	GGCGCC	1 cut(s)	222
Kpn2I	TCCGGA	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	8 cut(s)	115, 126, 231, 364, 522, 672, 833, 1048
LguI	GCTCTTC	1 cut(s)	571
LmnI	GCTCC	3 cut(s)	274, 323, 410
LweI	GCATC	2 cut(s)	138, 321
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	3 cut(s)	290, 466, 869
MalI	GATC	8 cut(s)	117, 128, 233, 366, 524, 674, 835, 1050
MboI	GATC	8 cut(s)	115, 126, 231, 364, 522, 672, 833, 1048
MboII	GAAGA	5 cut(s)	45, 588, 634, 734, 1001
MluCI	AATT	5 cut(s)	103, 206, 560, 749, 878
Mly113I	GGCGCC	1 cut(s)	223
MlyI	GAGTC	2 cut(s)	287, 293
MmeI	TCCRAC	3 cut(s)	322, 524, 1035
MnlI	CCTC	9 cut(s)	103, 275, 317, 359, 486, 591, 669, 718, 748
Mph1103I	ATGCAT	1 cut(s)	153
MroI	TCCGGA	1 cut(s)	661
MroXI	GAANNNNTTC	1 cut(s)	626
MslI	CAYNNNNRTG	2 cut(s)	98, 614
MspI	CCGG	4 cut(s)	29, 572, 662, 944
MspR9I	CCNGG	9 cut(s)	64, 566, 573, 686, 734, 826, 944, 950, 1031
MvaI	CCWGG	7 cut(s)	64, 566, 686, 734, 826, 950, 1031
MwoI	GCNNNNNNNGC	3 cut(s)	10, 587, 712
NarI	GGCGCC	1 cut(s)	223
NciI	CCSGG	2 cut(s)	573, 944
NcoI	CCATGG	1 cut(s)	710
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	8 cut(s)	115, 126, 231, 364, 522, 672, 833, 1048
NlaIII	CATG	8 cut(s)	97, 155, 197, 331, 404, 554, 670, 714
NlaIV	GGNNCC	3 cut(s)	224, 270, 570
NmuCI	GTSAC	2 cut(s)	290, 466
NsiI	ATGCAT	1 cut(s)	153
NspI	RCATGY	1 cut(s)	155
OliI	CACNNNNGTG	1 cut(s)	614
PagI	TCATGA	1 cut(s)	93
PasI	CCCWGGG	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	626
PfeI	GAWTC	3 cut(s)	190, 758, 885
PflMI	CCANNNNNTGG	1 cut(s)	265
PfoI	TCCNGGA	3 cut(s)	564, 684, 942
PleI	GAGTC	2 cut(s)	287, 293
PluTI	GGCGCC	1 cut(s)	226
PpsI	GAGTC	2 cut(s)	287, 293
PsiI	TTATAA	1 cut(s)	638
Psp6I	CCWGG	7 cut(s)	62, 564, 684, 732, 824, 948, 1029
PspFI	CCCAGC	2 cut(s)	314, 419
PspGI	CCWGG	7 cut(s)	62, 564, 684, 732, 824, 948, 1029
PspN4I	GGNNCC	3 cut(s)	224, 270, 570
PspPI	GGNCC	3 cut(s)	173, 799, 946
PstNI	CAGNNNCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	2 cut(s)	98, 614
SapI	GCTCTTC	1 cut(s)	571
Sau3AI	GATC	8 cut(s)	115, 126, 231, 364, 522, 672, 833, 1048
Sau96I	GGNCC	3 cut(s)	173, 799, 946
SchI	GAGTC	2 cut(s)	287, 293
ScrFI	CCNGG	9 cut(s)	64, 566, 573, 686, 734, 826, 944, 950, 1031
SfaNI	GCATC	2 cut(s)	138, 321
SfoI	GGCGCC	1 cut(s)	224
SinI	GGWCC	3 cut(s)	173, 799, 946
SmiMI	CAYNNNNRTG	2 cut(s)	98, 614
Sse9I	AATT	5 cut(s)	103, 206, 560, 749, 878
SspDI	GGCGCC	1 cut(s)	222
StyD4I	CCNGG	9 cut(s)	62, 564, 571, 684, 732, 824, 942, 948, 1029
StyI	CCWWGG	1 cut(s)	710
TaaI	ACNGT	4 cut(s)	478, 616, 791, 847
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	521
TasI	AATT	5 cut(s)	103, 206, 560, 749, 878
TfiI	GAWTC	3 cut(s)	190, 758, 885
TscAI	CASTG	2 cut(s)	621, 775
TseFI	GTSAC	2 cut(s)	290, 466
Tsp45I	GTSAC	2 cut(s)	290, 466
TspDTI	ATGAA	6 cut(s)	9, 82, 116, 182, 635, 850
TspGWI	ACGGA	2 cut(s)	552, 984
TspRI	CASTG	2 cut(s)	621, 775
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	3 cut(s)	173, 799, 946
XapI	RAATTY	2 cut(s)	749, 878
XceI	RCATGY	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	626
Zsp2I	ATGCAT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.