Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003340.1

Orthogroup ID

OG0004189

Physical Location & Seq

Genomic Coordinates Reverse (-)

3635 .. 4964

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003340.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgagtgaggtaagtcaccaaaggatcaaaaccaatggaatatggatgcacatagcagaacaagggacagggcctcttgtgcttcttctccatggcttccccgaaatatggtactcgtggcgccatcaaattggttacttggctaaacatggctaccatgtggttgcaccagatatgagaggctacggtgacactgactcacctctcagccctagctcatactctcttcttcaccttgttggagaccttattgatcttgttgaccattttggtcaacaacaggcatttttggtgggacatgactatggagctattgttgcttggcatctgagtctgttccggcctgatagagtcaaggcattagttgcactatctgctccgtactttgaaccatcttcaagtatcaggagtattgaatctttcaggcaaggttttggtgaaggatgttatgtttgtcagtttcaggaaccgggaagggcagaaagatcttttgcgagatatgactatttgacagtgatgaagaagttcttgctgtataacaagacagattatctggtagctccacctgggatggagcttatagattatctggagacaccagcaaaattgccaccatggataactgaggaggacctccaagtctatgctgaaaagtttgaggaatctggtttcactggtgctctcaattattttcgaacccttgagtcgtactgggagctaatgggaccatggcgaggaaaaaggattagtgttccagcaaagttcattgtaggtgacaaagatattggttatgatgctctgggcaccggagaatatgtgaaaggagatgttttcaagagtctggtaccgaacctggaagtcgtaatcttagacggtcaccattttatccagcaagagaaacctcaggaagtctcccacgaaattctctccttcataagcaaattttctacagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

318

Amino Acids

36.22

Weight (kDa)

5.53

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51000
fragaria_vesca	FvH4_1g12460 FvH4_1g12461
malus_domestica	MD02G1138300.v1.1 MD02G1138500.v1.1 MD02G1138600.v1.1 MD15G1252000.v1.1
prunus_persica	Prupe.7G162300_v2.0.a1 Prupe.7G162400_v2.0.a1 Prupe.7G162400_v2.0.a1
pyrus_communis	pycom02g10960 pycom02g10980 pycom15g22200
rosa_chinensis	RchiOBHm_Chr2g0100321 RchiOBHm_Chr2g0100331
rosa_laevigata	RLG00000016965 RLG00000016966
rosa_multiflora	Rmu_sc0003340.1_g000002 Rmu_sc0003340.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142320 Rroxscaffold_2G00142330
rosa_rugosa	Rorug02G0087700 Rorug02G0087700
rosa_samantha	Rh2AG136700 Rh2AG136800 Rh2BG140200 Rh2BG140300 Rh2CG142000 Rh2CG142100 Rh2DG142100 Rh2DG142200
rosa_wichuraiana	Rw2G010690 Rw2G010700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	638
Acc65I	GGTACC	1 cut(s)	844
AccB1I	GGYRCC	3 cut(s)	120, 803, 844
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	2 cut(s)	921, 941
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	4 cut(s)	113, 383, 710, 846
AfiI	CCNNNNNNNGG	2 cut(s)	108, 734
AgsI	TTSAA	4 cut(s)	389, 399, 416, 835
AjnI	CCWGG	2 cut(s)	565, 852
AluBI	AGCT	5 cut(s)	216, 311, 560, 577, 718
AluI	AGCT	5 cut(s)	216, 311, 560, 577, 718
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	3 cut(s)	237, 587, 916
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	2 cut(s)	71, 341
ApoI	RAATTY	2 cut(s)	921, 941
Asp700I	GAANNNNTTC	1 cut(s)	524
Asp718I	GGTACC	1 cut(s)	844
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	3 cut(s)	71, 631, 725
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	7 cut(s)	8, 192, 200, 224, 449, 785, 869
AsuII	TTCGAA	1 cut(s)	694
AvaII	GGWCC	2 cut(s)	631, 725
AxyI	CCTNAGG	1 cut(s)	903
BaeGI	GKGCMC	1 cut(s)	806
BanI	GGYRCC	3 cut(s)	120, 803, 844
BauI	CACGAG	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	682
BccI	CCATC	3 cut(s)	132, 400, 565
BciT130I	CCWGG	2 cut(s)	567, 854
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	3 cut(s)	237, 587, 916
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	948
BfoI	RGCGCY	1 cut(s)	124
BglII	AGATCT	1 cut(s)	485
Bme1390I	CCNGG	3 cut(s)	471, 567, 854
Bme18I	GGWCC	2 cut(s)	631, 725
BmgT120I	GGNCC	3 cut(s)	71, 631, 725
BmiI	GGNNCC	5 cut(s)	122, 468, 726, 805, 846
BmrFI	CCNGG	3 cut(s)	471, 567, 854
BmrI	ACTGGG	1 cut(s)	721
BmsI	GCATC	3 cut(s)	36, 334, 784
BmuI	ACTGGG	1 cut(s)	721
BpmI	CTGGAG	1 cut(s)	611
Bpu14I	TTCGAA	1 cut(s)	694
BpuEI	CTTGAG	1 cut(s)	722
BpuMI	CCSGG	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	4 cut(s)	91, 566, 614, 728
BsaWI	WCCGGW	1 cut(s)	806
BsaXI	ACNNNNNCTCC	4 cut(s)	300, 330, 801, 831
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 734
Bse1I	ACTGG	2 cut(s)	679, 716
Bse21I	CCTNAGG	1 cut(s)	903
BseBI	CCWGG	2 cut(s)	567, 854
BseDI	CCNNGG	4 cut(s)	91, 566, 614, 728
BseGI	GGATG	3 cut(s)	51, 449, 576
BseLI	CCNNNNNNNGG	2 cut(s)	108, 734
BseMII	CTCAG	4 cut(s)	220, 320, 615, 917
BseNI	ACTGG	2 cut(s)	679, 716
BseRI	GAGGAG	1 cut(s)	641
BseSI	GKGCMC	1 cut(s)	806
BshFI	GGCC	2 cut(s)	73, 343
BshNI	GGYRCC	3 cut(s)	120, 803, 844
BsiHKAI	GWGCWC	1 cut(s)	682
BsiSI	CCGG	3 cut(s)	340, 470, 807
BslFI	GGGAC	3 cut(s)	79, 309, 738
BslI	CCNNNNNNNGG	2 cut(s)	108, 734
BsmAI	GTCTC	3 cut(s)	237, 587, 916
BsmFI	GGGAC	3 cut(s)	79, 309, 738
BsnI	GGCC	2 cut(s)	73, 343
Bso31I	GGTCTC	1 cut(s)	237
Bsp119I	TTCGAA	1 cut(s)	694
Bsp1286I	GDGCHC	2 cut(s)	682, 806
Bsp143I	GATC	3 cut(s)	24, 253, 485
Bsp19I	CCATGG	3 cut(s)	91, 614, 728
BspANI	GGCC	2 cut(s)	73, 343
BspCNI	CTCAG	4 cut(s)	219, 321, 616, 916
BspLI	GGNNCC	5 cut(s)	122, 468, 726, 805, 846
BspPI	GGATC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	694
BspT107I	GGYRCC	3 cut(s)	120, 803, 844
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	679, 716
BssECI	CCNNGG	4 cut(s)	91, 566, 614, 728
BssMI	GATC	3 cut(s)	24, 253, 485
BssNI	GRCGYC	1 cut(s)	121
BssSI	CACGAG	1 cut(s)	115
BssT1I	CCWWGG	3 cut(s)	91, 614, 728
Bst2BI	CACGAG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	567, 854
Bst4CI	ACNGT	3 cut(s)	188, 514, 875
Bst6I	CTCTTC	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	121
BstAPI	GCANNNNNTGC	2 cut(s)	365, 374
BstBI	TTCGAA	1 cut(s)	694
BstDEI	CTNAG	5 cut(s)	206, 329, 624, 868, 903
BstDSI	CCRYGG	3 cut(s)	91, 614, 728
BstEII	GGTNACC	1 cut(s)	875
BstF5I	GGATG	3 cut(s)	51, 449, 576
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	27, 256, 488
BstMAI	GTCTC	3 cut(s)	237, 587, 916
BstMBI	GATC	3 cut(s)	24, 253, 485
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 317, 365, 374
BstNI	CCWGG	2 cut(s)	567, 854
BstPI	GGTNACC	1 cut(s)	875
BstSCI	CCNGG	3 cut(s)	469, 565, 852
BstSFI	CTRYAG	1 cut(s)	948
BstSLI	GKGCMC	1 cut(s)	806
BstX2I	RGATCY	1 cut(s)	485
BstXI	CCANNNNNNTGG	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	485
Bsu36I	CCTNAGG	1 cut(s)	903
BsuRI	GGCC	2 cut(s)	73, 343
BtgI	CCRYGG	3 cut(s)	91, 614, 728
BtsCI	GGATG	3 cut(s)	51, 449, 576
BtsIMutI	CAGTG	3 cut(s)	192, 519, 672
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	3 cut(s)	71, 631, 725
Csp6I	GTAC	4 cut(s)	112, 382, 709, 845
CviAII	CATG	6 cut(s)	92, 149, 158, 299, 615, 729
CviQI	GTAC	4 cut(s)	112, 382, 709, 845
DdeI	CTNAG	5 cut(s)	206, 329, 624, 868, 903
DinI	GGCGCC	1 cut(s)	122
DpnI	GATC	3 cut(s)	26, 255, 487
DpnII	GATC	3 cut(s)	24, 253, 485
DrdI	GACNNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	638
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	3 cut(s)	91, 614, 728
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	631, 725
Eco81I	CCTNAGG	1 cut(s)	903
Eco91I	GGTNACC	1 cut(s)	875
EcoO109I	RGGNCCY	2 cut(s)	71, 631
EcoO65I	GGTNACC	1 cut(s)	875
EcoRII	CCWGG	2 cut(s)	565, 852
EcoT14I	CCWWGG	3 cut(s)	91, 614, 728
EgeI	GGCGCC	1 cut(s)	122
EheI	GGCGCC	1 cut(s)	122
ErhI	CCWWGG	3 cut(s)	91, 614, 728
FaeI	CATG	6 cut(s)	95, 152, 161, 302, 618, 732
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	3 cut(s)	79, 309, 738
FatI	CATG	6 cut(s)	91, 148, 157, 298, 614, 728
FokI	GGATG	3 cut(s)	58, 456, 583
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	611
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	73, 343
HapII	CCGG	3 cut(s)	340, 470, 807
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	6 cut(s)	95, 152, 161, 302, 618, 732
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	2 cut(s)	262, 275
HindII	GTYRAC	2 cut(s)	262, 275
HinfI	GANTC	7 cut(s)	197, 331, 351, 416, 662, 704, 838
HpaII	CCGG	3 cut(s)	340, 470, 807
HphI	GGTGA	7 cut(s)	8, 192, 200, 224, 449, 785, 869
Hpy166II	GTNNAC	2 cut(s)	262, 275
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	5 cut(s)	406, 464, 590, 835, 905
Hpy8I	GTNNAC	2 cut(s)	262, 275
HpyAV	CCTTC	3 cut(s)	434, 468, 940
HpyCH4III	ACNGT	3 cut(s)	188, 514, 875
HpyCH4V	TGCA	3 cut(s)	49, 167, 368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 317, 365, 374
HpyF3I	CTNAG	5 cut(s)	206, 329, 624, 868, 903
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	6 cut(s)	95, 152, 161, 302, 618, 732
HspAI	GCGC	1 cut(s)	121
KasI	GGCGCC	1 cut(s)	120
KpnI	GGTACC	1 cut(s)	848
Kzo9I	GATC	3 cut(s)	24, 253, 485
LmnI	GCTCC	5 cut(s)	308, 382, 565, 574, 715
LweI	GCATC	3 cut(s)	36, 334, 784
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	5 cut(s)	14, 134, 188, 773, 875
MalI	GATC	3 cut(s)	26, 255, 487
MboI	GATC	3 cut(s)	24, 253, 485
MboII	GAAGA	5 cut(s)	77, 218, 221, 387, 532
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	2 cut(s)	682, 806
MluCI	AATT	5 cut(s)	129, 605, 685, 921, 941
Mly113I	GGCGCC	1 cut(s)	121
MlyI	GAGTC	5 cut(s)	191, 340, 360, 713, 847
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	9 cut(s)	84, 173, 213, 619, 622, 644, 652, 728, 912
MroXI	GAANNNNTTC	1 cut(s)	524
MslI	CAYNNNNRTG	1 cut(s)	303
MspI	CCGG	3 cut(s)	340, 470, 807
MspR9I	CCNGG	3 cut(s)	471, 567, 854
MvaI	CCWGG	2 cut(s)	567, 854
MwoI	GCNNNNNNNGC	4 cut(s)	79, 317, 365, 374
NarI	GGCGCC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	471
NcoI	CCATGG	3 cut(s)	91, 614, 728
NdeII	GATC	3 cut(s)	24, 253, 485
NlaIII	CATG	6 cut(s)	95, 152, 161, 302, 618, 732
NlaIV	GGNNCC	5 cut(s)	122, 468, 726, 805, 846
NmuCI	GTSAC	4 cut(s)	14, 188, 773, 875
NspV	TTCGAA	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	2 cut(s)	416, 662
PleI	GAGTC	5 cut(s)	191, 339, 359, 712, 846
PluTI	GGCGCC	1 cut(s)	124
PpsI	GAGTC	5 cut(s)	191, 339, 359, 712, 846
PpuMI	RGGWCCY	1 cut(s)	631
Psp5II	RGGWCCY	1 cut(s)	631
Psp6I	CCWGG	2 cut(s)	565, 852
PspEI	GGTNACC	1 cut(s)	875
PspGI	CCWGG	2 cut(s)	565, 852
PspN4I	GGNNCC	5 cut(s)	122, 468, 726, 805, 846
PspPI	GGNCC	3 cut(s)	71, 631, 725
PspPPI	RGGWCCY	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	4 cut(s)	113, 383, 710, 846
RsaNI	GTAC	4 cut(s)	112, 382, 709, 845
RseI	CAYNNNNRTG	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	24, 253, 485
Sau96I	GGNCC	3 cut(s)	71, 631, 725
SchI	GAGTC	5 cut(s)	191, 340, 360, 713, 847
ScrFI	CCNGG	3 cut(s)	471, 567, 854
SduI	GDGCHC	2 cut(s)	682, 806
SfaNI	GCATC	3 cut(s)	36, 334, 784
SfcI	CTRYAG	1 cut(s)	948
SfoI	GGCGCC	1 cut(s)	122
SfuI	TTCGAA	1 cut(s)	694
SinI	GGWCC	2 cut(s)	631, 725
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
Sse9I	AATT	5 cut(s)	129, 605, 685, 921, 941
SspDI	GGCGCC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	469, 565, 852
StyI	CCWWGG	3 cut(s)	91, 614, 728
TaaI	ACNGT	3 cut(s)	188, 514, 875
TaqI	TCGA	1 cut(s)	694
TasI	AATT	5 cut(s)	129, 605, 685, 921, 941
TfiI	GAWTC	2 cut(s)	416, 662
TscAI	CASTG	3 cut(s)	199, 519, 679
TseFI	GTSAC	4 cut(s)	14, 188, 773, 875
Tsp45I	GTSAC	4 cut(s)	14, 188, 773, 875
TspDTI	ATGAA	3 cut(s)	533, 754, 922
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	3 cut(s)	199, 519, 679
VpaK11BI	GGWCC	2 cut(s)	631, 725
XapI	RAATTY	2 cut(s)	921, 941
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.